Cla007608 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007608
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Amine oxidase (AHRD V1 **-- D6V891_9BRAD); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase
Location	Chr6 : 8365577 .. 8365852 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTTGCTGTGGTCGGAGCCGGAATTAGCGGCTTGGTTTCCGCCTTTGTTCTGGCTAAAGCCGGAGTGGAGGTTGTGGTTTTCGAGAAGGAACATTATCTTGGCGGCCATTCCAAAACGGTCCACTTCCATGGCCTTGATTTGGACCTCGGATTCATGGTCTTCAATCGAGTACGTTTTCTCTCTCTTTCTCTCTCTCTCTCTAAGTCTGCAATCTTAGCGGATTGCGATTGTATGGATGACGATACAGTCGCAGCTGCTGAGTACAAGTAA

mRNA sequence

ATGAAGGTTGCTGTGGTCGGAGCCGGAATTAGCGGCTTGGTTTCCGCCTTTGTTCTGGCTAAAGCCGGAGTGGAGGTTGTGGTTTTCGAGAAGGAACATTATCTTGGCGGCCATTCCAAAACGGTCCACTTCCATGGCCTTGATTTGGACCTCGGATTCATGGTCTTCAATCGAGTACGTTTTCTCTCTCTTTCTCTCTCTCTCTCTAAGTCTGCAATCTTAGCGGATTGCGATTGTATGGATGACGATACAGTCGCAGCTGCTGAGTACAAGTAA

Coding sequence (CDS)

ATGAAGGTTGCTGTGGTCGGAGCCGGAATTAGCGGCTTGGTTTCCGCCTTTGTTCTGGCTAAAGCCGGAGTGGAGGTTGTGGTTTTCGAGAAGGAACATTATCTTGGCGGCCATTCCAAAACGGTCCACTTCCATGGCCTTGATTTGGACCTCGGATTCATGGTCTTCAATCGAGTACGTTTTCTCTCTCTTTCTCTCTCTCTCTCTAAGTCTGCAATCTTAGCGGATTGCGATTGTATGGATGACGATACAGTCGCAGCTGCTGAGTACAAGTAA

Protein sequence

MKVAVVGAGISGLVSAFVLAKAGVEVVVFEKEHYLGGHSKTVHFHGLDLDLGFMVFNRVRFLSLSLSLSKSAILADCDCMDDDTVAAAEYK

Homology

[Close]

BLAST of Cla007608 vs. TrEMBL
Match: A0A0A0LKK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G171950 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-20
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 1  MKVAVVGAGISGLVSAFVLAKAGVEVVVFEKEHYLGGHSKTVHFHGLDLDLGFMVFNRVR 60
          MKVAVVG GISGLVSA+VLAKAGVEVV+ EKE Y+GGHSKTVHFHG DLDLGFMVFN V 
Sbjct: 1  MKVAVVGGGISGLVSAYVLAKAGVEVVLLEKEDYVGGHSKTVHFHGFDLDLGFMVFNHVT 60

Query: 61 F 62
          +
Sbjct: 61 Y 61

[Close]

BLAST of Cla007608 vs. TrEMBL
Match: A0A0A0LIH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G171940 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.6e-20
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 1  MKVAVVGAGISGLVSAFVLAKAGVEVVVFEKEHYLGGHSKTVHFHGLDLDLGFMVFNRVR 60
          MKVAVVG GISGLVSAFVLA+AGVEVV+FEKE Y+GGHSKTVHF G+DLDLGFMVFN V 
Sbjct: 1  MKVAVVGGGISGLVSAFVLAEAGVEVVLFEKEDYVGGHSKTVHFDGVDLDLGFMVFNTVT 60

Query: 61 F 62
          +
Sbjct: 61 Y 61

[Close]

BLAST of Cla007608 vs. TrEMBL
Match: B9HKT3_POPTR (Cyclopropane-fatty-acyl-phospholipid synthase family protein OS=Populus trichocarpa GN=POPTR_0008s17020g PE=4 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-19
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 1  MKVAVVGAGISGLVSAFVLAKAGVEVVVFEKEHYLGGHSKTVHFHGLDLDLGFMVFNRVR 60
          M+VAVVGAGISGLVSA+VLAKAGVEVV++EKE YLGGH+KTV F G+DLDLGFMVFNRV 
Sbjct: 1  MRVAVVGAGISGLVSAYVLAKAGVEVVLYEKEDYLGGHAKTVSFDGVDLDLGFMVFNRVT 60

Query: 61 F 62
          +
Sbjct: 61 Y 61

[Close]

BLAST of Cla007608 vs. TrEMBL
Match: A0A0D2PMZ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G052900 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.4e-19
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 1  MKVAVVGAGISGLVSAFVLAKAGVEVVVFEKEHYLGGHSKTVHFHGLDLDLGFMVFNRVR 60
          MK+AVVG GISG+VSA+ LAKAG  VV++EKE YLGGHSKTVHF G+DLDLGFMVFNRV 
Sbjct: 1  MKIAVVGGGISGVVSAYTLAKAGANVVLYEKEEYLGGHSKTVHFDGVDLDLGFMVFNRVT 60

Query: 61 F 62
          +
Sbjct: 61 Y 61

[Close]

BLAST of Cla007608 vs. TrEMBL
Match: A0A0D2RG04_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G052900 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.4e-19
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 1  MKVAVVGAGISGLVSAFVLAKAGVEVVVFEKEHYLGGHSKTVHFHGLDLDLGFMVFNRVR 60
          MK+AVVG GISG+VSA+ LAKAG  VV++EKE YLGGHSKTVHF G+DLDLGFMVFNRV 
Sbjct: 1  MKIAVVGGGISGVVSAYTLAKAGANVVLYEKEEYLGGHSKTVHFDGVDLDLGFMVFNRVT 60

Query: 61 F 62
          +
Sbjct: 61 Y 61

[Close]

BLAST of Cla007608 vs. NCBI nr
Match: gi|778668680|ref|XP_011649135.1| (PREDICTED: uncharacterized protein LOC105434590 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-20
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 1  MKVAVVGAGISGLVSAFVLAKAGVEVVVFEKEHYLGGHSKTVHFHGLDLDLGFMVFNRVR 60
          MKVAVVG GISGLVSA+VLAKAGVEVV+ EKE Y+GGHSKTVHFHG DLDLGFMVFN V 
Sbjct: 1  MKVAVVGGGISGLVSAYVLAKAGVEVVLLEKEDYVGGHSKTVHFHGFDLDLGFMVFNHVT 60

Query: 61 F 62
          +
Sbjct: 61 Y 61

[Close]

BLAST of Cla007608 vs. NCBI nr
Match: gi|659121467|ref|XP_008460674.1| (PREDICTED: uncharacterized protein LOC103499444 isoform X1 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 1  MKVAVVGAGISGLVSAFVLAKAGVEVVVFEKEHYLGGHSKTVHFHGLDLDLGFMVFNRVR 60
          MKVAVVG GISGLVSAFVLA+AGVEVV+FEKE Y+GGHSKTVHF G+DLDLGFMVFN V 
Sbjct: 1  MKVAVVGGGISGLVSAFVLAEAGVEVVLFEKEDYVGGHSKTVHFDGVDLDLGFMVFNTVT 60

Query: 61 F 62
          +
Sbjct: 61 Y 61

[Close]

BLAST of Cla007608 vs. NCBI nr
Match: gi|778668684|ref|XP_011649136.1| (PREDICTED: uncharacterized protein LOC101213850 isoform X1 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 1  MKVAVVGAGISGLVSAFVLAKAGVEVVVFEKEHYLGGHSKTVHFHGLDLDLGFMVFNRVR 60
          MKVAVVG GISGLVSAFVLA+AGVEVV+FEKE Y+GGHSKTVHF G+DLDLGFMVFN V 
Sbjct: 1  MKVAVVGGGISGLVSAFVLAEAGVEVVLFEKEDYVGGHSKTVHFDGVDLDLGFMVFNTVT 60

Query: 61 F 62
          +
Sbjct: 61 Y 61

[Close]

BLAST of Cla007608 vs. NCBI nr
Match: gi|659121469|ref|XP_008460675.1| (PREDICTED: uncharacterized protein LOC103499444 isoform X2 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 1  MKVAVVGAGISGLVSAFVLAKAGVEVVVFEKEHYLGGHSKTVHFHGLDLDLGFMVFNRVR 60
          MKVAVVG GISGLVSAFVLA+AGVEVV+FEKE Y+GGHSKTVHF G+DLDLGFMVFN V 
Sbjct: 1  MKVAVVGGGISGLVSAFVLAEAGVEVVLFEKEDYVGGHSKTVHFDGVDLDLGFMVFNTVT 60

Query: 61 F 62
          +
Sbjct: 61 Y 61

[Close]

BLAST of Cla007608 vs. NCBI nr
Match: gi|743854349|ref|XP_011029772.1| (PREDICTED: uncharacterized protein LOC105129420 isoform X2 [Populus euphratica])

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-19
Identity = 50/61 (81.97%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 1  MKVAVVGAGISGLVSAFVLAKAGVEVVVFEKEHYLGGHSKTVHFHGLDLDLGFMVFNRVR 60
          M+VAVVGAGISGLVSA+VLAKAGVEVV++EKE+YLGGH+KTV F G+DLDLGFMVFNRV 
Sbjct: 1  MRVAVVGAGISGLVSAYVLAKAGVEVVLYEKENYLGGHAKTVSFDGVDLDLGFMVFNRVT 60

Query: 61 F 62
          +
Sbjct: 61 Y 61

The following BLAST results are available for this feature:

BLAST of Cla007608 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKK5_CUCSA	2.6e-20	83.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G171950 PE=4 SV=1	[more]
A0A0A0LIH1_CUCSA	7.6e-20	83.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G171940 PE=4 SV=1	[more]
B9HKT3_POPTR	2.2e-19	81.97	Cyclopropane-fatty-acyl-phospholipid synthase family protein OS=Populus trichoca...	[more]
A0A0D2PMZ8_GOSRA	8.4e-19	77.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G052900 PE=4 SV=1	[more]
A0A0D2RG04_GOSRA	8.4e-19	77.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G052900 PE=4 SV=1	[more]

BLAST of Cla007608 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778668680\|ref\|XP_011649135.1\|	3.7e-20	83.61	PREDICTED: uncharacterized protein LOC105434590 [Cucumis sativus]	[more]
gi\|659121467\|ref\|XP_008460674.1\|	1.1e-19	83.61	PREDICTED: uncharacterized protein LOC103499444 isoform X1 [Cucumis melo]	[more]
gi\|778668684\|ref\|XP_011649136.1\|	1.1e-19	83.61	PREDICTED: uncharacterized protein LOC101213850 isoform X1 [Cucumis sativus]	[more]
gi\|659121469\|ref\|XP_008460675.1\|	1.1e-19	83.61	PREDICTED: uncharacterized protein LOC103499444 isoform X2 [Cucumis melo]	[more]
gi\|743854349\|ref\|XP_011029772.1\|	1.9e-19	81.97	PREDICTED: uncharacterized protein LOC105129420 isoform X2 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023753	FAD/NAD-binding_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008610	lipid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016491	oxidoreductase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU12857	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU15832	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007608	Cla007608.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU15832	WMU15832	transcribed_cluster
WMU12857	WMU12857	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023753	FAD/NAD(P)-binding domain	GENE3D	G3DSA:3.50.50.60		coord: 1..57 score: 6.7
IPR023753	FAD/NAD(P)-binding domain	unknown	SSF51905	FAD/NAD(P)-binding domain	coord: 1..58 score: 9.71
None	No IPR available	PRINTS	PR00419	ADXRDTASE	coord: 25..38 score: 4.7E-7coord: 2..24 score: 4.
None	No IPR available	PANTHER	PTHR10742	AMINE OXIDASE	coord: 1..58 score: 2.5
None	No IPR available	PANTHER	PTHR10742:SF221	SUBFAMILY NOT NAMED	coord: 1..58 score: 2.5
None	No IPR available	PFAM	PF13450	NAD_binding_8	coord: 5..59 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007608	Cla97C06G116930	Watermelon (97103) v2	wmwmbB406
Cla007608	Csa2G172460	Cucumber (Chinese Long) v2	cuwmB172
Cla007608	MELO3C023031	Melon (DHL92) v3.5.1	mewmB430
Cla007608	MELO3C023031.2	Melon (DHL92) v3.6.1	medwmB418
Cla007608	Bhi12G001398	Wax gourd	wgowmB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007608	Cucurbita pepo (Zucchini)	cpewmB161
Cla007608	Cucurbita pepo (Zucchini)	cpewmB271
Cla007608	Cucurbita pepo (Zucchini)	cpewmB334
Cla007608	Cucurbita pepo (Zucchini)	cpewmB622
Cla007608	Cucurbita pepo (Zucchini)	cpewmB752
Cla007608	Cucurbita pepo (Zucchini)	cpewmB853
Cla007608	Bottle gourd (USVL1VR-Ls)	lsiwmB040
Cla007608	Bottle gourd (USVL1VR-Ls)	lsiwmB382
Cla007608	Bottle gourd (USVL1VR-Ls)	lsiwmB383
Cla007608	Cucumber (Gy14) v2	cgybwmB163
Cla007608	Cucumber (Gy14) v2	cgybwmB262
Cla007608	Melon (DHL92) v3.6.1	medwmB384
Cla007608	Melon (DHL92) v3.6.1	medwmB474
Cla007608	Silver-seed gourd	carwmB0219
Cla007608	Silver-seed gourd	carwmB0224
Cla007608	Silver-seed gourd	carwmB0753
Cla007608	Silver-seed gourd	carwmB0785
Cla007608	Silver-seed gourd	carwmB0962
Cla007608	Silver-seed gourd	carwmB1077
Cla007608	Cucumber (Chinese Long) v3	cucwmB184
Cla007608	Cucumber (Chinese Long) v3	cucwmB286
Cla007608	Cucumber (Chinese Long) v3	cucwmB288
Cla007608	Watermelon (97103) v2	wmwmbB402
Cla007608	Watermelon (97103) v2	wmwmbB413
Cla007608	Wax gourd	wgowmB239
Cla007608	Wax gourd	wgowmB288
Cla007608	Watermelon (97103) v1	wmwmB116
Cla007608	Watermelon (97103) v1	wmwmB138
Cla007608	Cucumber (Gy14) v1	cgywmB483
Cla007608	Cucumber (Gy14) v1	cgywmB691
Cla007608	Cucurbita maxima (Rimu)	cmawmB250
Cla007608	Cucurbita maxima (Rimu)	cmawmB358
Cla007608	Cucurbita maxima (Rimu)	cmawmB507
Cla007608	Cucurbita maxima (Rimu)	cmawmB611
Cla007608	Cucurbita maxima (Rimu)	cmawmB811
Cla007608	Cucurbita maxima (Rimu)	cmawmB878
Cla007608	Cucurbita moschata (Rifu)	cmowmB239
Cla007608	Cucurbita moschata (Rifu)	cmowmB353
Cla007608	Cucurbita moschata (Rifu)	cmowmB500
Cla007608	Cucurbita moschata (Rifu)	cmowmB604
Cla007608	Cucurbita moschata (Rifu)	cmowmB802
Cla007608	Cucurbita moschata (Rifu)	cmowmB867
Cla007608	Melon (DHL92) v3.5.1	mewmB486
Cla007608	Melon (DHL92) v3.5.1	mewmB390
Cla007608	Watermelon (Charleston Gray)	wcgwmB311
Cla007608	Watermelon (Charleston Gray)	wcgwmB344
Cla007608	Watermelon (Charleston Gray)	wcgwmB395
Cla007608	Cucumber (Chinese Long) v2	cuwmB277
Cla007608	Cucumber (Chinese Long) v2	cuwmB279