Cla007457 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007457
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 23624731 .. 23625075 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTACCTTCGATGCGCGCTACATCCGGTTGGTTCATATTCCAAGTTGAAGTCTTGCAAAATCGATCCCTACAAAATTGTGAGGAAAATTGGTGATAATGCTTATGTTTTGGACTTACCACCAACAATCCACATGTCCCCTACCTCTAATGTTGTAGATCTGATCGAATATCATCCACCTGATGCCACGCCTACACTTGAGAAATCTGTCATCGACAAGGATAACTTGTTATTGGACATCGCAGATTCGTTAGACATGCAGATCTCGTCAGACATAGATCATCACACCGATATGCAAATTGCCACTAGGTTAGTTGGAGAAGATAACCTAGTTGCATGTTGA

mRNA sequence

ATGGCTTACCTTCGATGCGCGCTACATCCGGTTGGTTCATATTCCAAGTTGAAGTCTTGCAAAATCGATCCCTACAAAATTGTGAGGAAAATTGGTGATAATGCTTATGTTTTGGACTTACCACCAACAATCCACATGTCCCCTACCTCTAATGTTGTAGATCTGATCGAATATCATCCACCTGATGCCACGCCTACACTTGAGAAATCTGTCATCGACAAGGATAACTTGTTATTGGACATCGCAGATTCGTTAGACATGCAGATCTCGTCAGACATAGATCATCACACCGATATGCAAATTGCCACTAGGTTAGTTGGAGAAGATAACCTAGTTGCATGTTGA

Coding sequence (CDS)

ATGGCTTACCTTCGATGCGCGCTACATCCGGTTGGTTCATATTCCAAGTTGAAGTCTTGCAAAATCGATCCCTACAAAATTGTGAGGAAAATTGGTGATAATGCTTATGTTTTGGACTTACCACCAACAATCCACATGTCCCCTACCTCTAATGTTGTAGATCTGATCGAATATCATCCACCTGATGCCACGCCTACACTTGAGAAATCTGTCATCGACAAGGATAACTTGTTATTGGACATCGCAGATTCGTTAGACATGCAGATCTCGTCAGACATAGATCATCACACCGATATGCAAATTGCCACTAGGTTAGTTGGAGAAGATAACCTAGTTGCATGTTGA

Protein sequence

MAYLRCALHPVGSYSKLKSCKIDPYKIVRKIGDNAYVLDLPPTIHMSPTSNVVDLIEYHPPDATPTLEKSVIDKDNLLLDIADSLDMQISSDIDHHTDMQIATRLVGEDNLVAC

Homology

[Close]

BLAST of Cla007457 vs. TrEMBL
Match: M5WBG5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016266mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-10
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 1   MAYLRCALHPVGSYSKLKSCKIDPYKIVRKIGDNAYVLDLPPTIHMSPTSNVVDLIEYHP 60
           M YLR    PVG+YSKLK  K  PYK+++KI DNAYV+DLP ++ +S T NV DL E+H 
Sbjct: 479 MVYLRRERFPVGTYSKLKPQKYGPYKVLKKINDNAYVMDLPSSMGISSTFNVADLHEFHD 538

Query: 61  PDA 64
            ++
Sbjct: 539 DES 541

[Close]

BLAST of Cla007457 vs. TrEMBL
Match: A0A0A0LKH8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G162120 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 1


Query: 7   ALHPVGSYSKLKSCKIDPYKIVRKIGDNAYVLDLPPTIHMSPTSNVVDLIEYHPPDATPT 66
           A+  +   SKLK  ++    I+RKIG NAYVLDLP +I+ S T NV++L  YHP D  PT
Sbjct: 11  AIVNISDRSKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPT 70

Query: 67  LEKSVIDKDNLLLDIADSLDMQISSDIDHHTDMQIATRLVGEDNL 112
           ++K   +K +   D A+S    I +   +HT++     L+ ED+L
Sbjct: 71  IKKFENEKFDTKSDCANSSMGNILTKDANHTELLPVAMLIREDHL 112

[Close]

BLAST of Cla007457 vs. TrEMBL
Match: A0A072THL3_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0110s0070 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-08
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1


Query: 10  PVGSYSKLKSCKIDPYKIVRKIGDNAYVLDLPPTIHMSPTSNVVDLIEYH 60
           PVG+YSKL+ CK  P+K  RKI DNAYV+ LP +I++S T NVVD+ E H
Sbjct: 158 PVGTYSKLQPCKYGPFKATRKINDNAYVVALPDSINISNTFNVVDIHECH 207

[Close]

BLAST of Cla007457 vs. TrEMBL
Match: M5WCC7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017790mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 1    MAYLRCALHPVGSYSKLKSCKIDPYKIVRKIGDNAYVLDLPPTIHMSPTSNVVDLIEYHP 60
            M +LR    PVG+YSKLK  K  PYK++++I DNAYV++LP ++ +S   NV DL E+  
Sbjct: 1391 MIFLRKERFPVGTYSKLKPKKYGPYKVLKRINDNAYVIELPDSMGISNIFNVADLYEFRE 1450

Query: 61   PDATPTLEKSVIDKDNLLLDIADSLDMQ 89
             +   T  + + D   + L+   S +MQ
Sbjct: 1451 DEVEGTDVEQMADFIAVELEKGRSGNMQ 1478

[Close]

BLAST of Cla007457 vs. TrEMBL
Match: M5XJ91_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021778mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 1    MAYLRCALHPVGSYSKLKSCKIDPYKIVRKIGDNAYVLDLPPTIHMSPTSNVVDLIEYHP 60
            M +LR    P G+YSKLK  K  PYK++++I DNAYV++LP ++ +S   NV DL E+  
Sbjct: 1290 MIFLRKERFPAGTYSKLKPKKYGPYKVLKRINDNAYVIELPDSMGISNIFNVADLYEFRE 1349

Query: 61   PDATPTLEKSVIDKDNLLLDIADSLDMQI 90
             +   T    + D   + L+   S +MQI
Sbjct: 1350 DEVEGTDVDQMADFIAVELEKGRSGNMQI 1378

[Close]

BLAST of Cla007457 vs. NCBI nr
Match: gi|595809525|ref|XP_007202926.1| (hypothetical protein PRUPE_ppa016266mg, partial [Prunus persica])

HSP 1 Score: 72.4 bits (176), Expect = 5.7e-10
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 1   MAYLRCALHPVGSYSKLKSCKIDPYKIVRKIGDNAYVLDLPPTIHMSPTSNVVDLIEYHP 60
           M YLR    PVG+YSKLK  K  PYK+++KI DNAYV+DLP ++ +S T NV DL E+H 
Sbjct: 479 MVYLRRERFPVGTYSKLKPQKYGPYKVLKKINDNAYVMDLPSSMGISSTFNVADLHEFHD 538

Query: 61  PDA 64
            ++
Sbjct: 539 DES 541

[Close]

BLAST of Cla007457 vs. NCBI nr
Match: gi|700206410|gb|KGN61529.1| (hypothetical protein Csa_2G162120 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-09
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 1


Query: 7   ALHPVGSYSKLKSCKIDPYKIVRKIGDNAYVLDLPPTIHMSPTSNVVDLIEYHPPDATPT 66
           A+  +   SKLK  ++    I+RKIG NAYVLDLP +I+ S T NV++L  YHP D  PT
Sbjct: 11  AIVNISDRSKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPT 70

Query: 67  LEKSVIDKDNLLLDIADSLDMQISSDIDHHTDMQIATRLVGEDNL 112
           ++K   +K +   D A+S    I +   +HT++     L+ ED+L
Sbjct: 71  IKKFENEKFDTKSDCANSSMGNILTKDANHTELLPVAMLIREDHL 112

[Close]

BLAST of Cla007457 vs. NCBI nr
Match: gi|922326587|ref|XP_013442686.1| (hypothetical protein MTR_0110s0070 [Medicago truncatula])

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1


Query: 10  PVGSYSKLKSCKIDPYKIVRKIGDNAYVLDLPPTIHMSPTSNVVDLIEYH 60
           PVG+YSKL+ CK  P+K  RKI DNAYV+ LP +I++S T NVVD+ E H
Sbjct: 158 PVGTYSKLQPCKYGPFKATRKINDNAYVVALPDSINISNTFNVVDIHECH 207

[Close]

BLAST of Cla007457 vs. NCBI nr
Match: gi|685323672|ref|XP_009151506.1| (PREDICTED: serine/threonine-protein kinase TIO-like, partial [Brassica rapa])

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1


Query: 1    MAYLRCALHPVGSYSKLKSCKIDPYKIVRKIGDNAYVLDLPPTIHMSPTSNVVDLIEYH 60
            M +LR    PVG+Y KL+  K  P+KI+RK+ DNAYV+ LP  +++S T NV D+ EYH
Sbjct: 1007 MVFLRKERFPVGTYRKLQPRKYGPFKILRKLNDNAYVVALPEDMNISNTFNVADIYEYH 1065

[Close]

BLAST of Cla007457 vs. NCBI nr
Match: gi|595851814|ref|XP_007210190.1| (hypothetical protein PRUPE_ppa017790mg [Prunus persica])

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 1    MAYLRCALHPVGSYSKLKSCKIDPYKIVRKIGDNAYVLDLPPTIHMSPTSNVVDLIEYHP 60
            M +LR    PVG+YSKLK  K  PYK++++I DNAYV++LP ++ +S   NV DL E+  
Sbjct: 1391 MIFLRKERFPVGTYSKLKPKKYGPYKVLKRINDNAYVIELPDSMGISNIFNVADLYEFRE 1450

Query: 61   PDATPTLEKSVIDKDNLLLDIADSLDMQ 89
             +   T  + + D   + L+   S +MQ
Sbjct: 1451 DEVEGTDVEQMADFIAVELEKGRSGNMQ 1478

The following BLAST results are available for this feature:

BLAST of Cla007457 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WBG5_PRUPE	4.0e-10	53.97	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016266mg PE=4 S...	[more]
A0A0A0LKH8_CUCSA	2.0e-09	40.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G162120 PE=4 SV=1	[more]
A0A072THL3_MEDTR	8.4e-08	60.00	Uncharacterized protein OS=Medicago truncatula GN=MTR_0110s0070 PE=4 SV=1	[more]
M5WCC7_PRUPE	1.1e-07	39.77	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017790mg PE=4 SV=1	[more]
M5XJ91_PRUPE	1.9e-07	39.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021778mg PE=4 SV=1	[more]

BLAST of Cla007457 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|595809525\|ref\|XP_007202926.1\|	5.7e-10	53.97	hypothetical protein PRUPE_ppa016266mg, partial [Prunus persica]	[more]
gi\|700206410\|gb\|KGN61529.1\|	2.9e-09	40.00	hypothetical protein Csa_2G162120 [Cucumis sativus]	[more]
gi\|922326587\|ref\|XP_013442686.1\|	1.2e-07	60.00	hypothetical protein MTR_0110s0070 [Medicago truncatula]	[more]
gi\|685323672\|ref\|XP_009151506.1\|	1.6e-07	50.85	PREDICTED: serine/threonine-protein kinase TIO-like, partial [Brassica rapa]	[more]
gi\|595851814\|ref\|XP_007210190.1\|	1.6e-07	39.77	hypothetical protein PRUPE_ppa017790mg [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007457	Cla007457.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007457	Cucumber (Gy14) v1	cgywmB498
Cla007457	Cucurbita maxima (Rimu)	cmawmB027
Cla007457	Cucurbita maxima (Rimu)	cmawmB441
Cla007457	Cucurbita moschata (Rifu)	cmowmB019
Cla007457	Cucurbita moschata (Rifu)	cmowmB435
Cla007457	Melon (DHL92) v3.5.1	mewmB528
Cla007457	Watermelon (Charleston Gray)	wcgwmB285
Cla007457	Cucumber (Chinese Long) v2	cuwmB320
Cla007457	Cucurbita pepo (Zucchini)	cpewmB560
Cla007457	Cucurbita pepo (Zucchini)	cpewmB766
Cla007457	Bottle gourd (USVL1VR-Ls)	lsiwmB318
Cla007457	Cucumber (Gy14) v2	cgybwmB296
Cla007457	Melon (DHL92) v3.6.1	medwmB513
Cla007457	Silver-seed gourd	carwmB0630
Cla007457	Silver-seed gourd	carwmB0770
Cla007457	Cucumber (Chinese Long) v3	cucwmB333
Cla007457	Watermelon (97103) v2	wmwmbB207
Cla007457	Wax gourd	wgowmB624