Cla007429 (gene) Watermelon (97103) v1

NameCla007429
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGypsy-like retrotransposase (AHRD V1 *-*- B0F6T3_CUCSA)
LocationChr5 : 23130052 .. 23130993 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGACTTTAACTCTCAAAAGGATGAGGCATCCACCGACTCTGCAAAGCCTAAAACTTTGAAAAATGAAAAAGTTTCGAGTTCTCCAGTCTTGCGTTATGTCCCTTTGTCAAGACGTAAGAAGGGAGAGTCTCTATTTGCAAAGTGCTCGAAGGGCTTGAAGGTTGGCGATGTTGAAATCCTAAAAGAGAGTTTCGTTATGCCGCTTACTAGTATCGCAAAGCAAGAAGTTCAGGAACTGAGAGTGGACCTGACAAAAGTGAATCTGCCCGAGAGACGAACGAAGGATGGCTTCGACCTAAATGCTTATAAACTACTAGCAAAGGCGGGCTACAACTTCACGACCCACACTGAGTTCAAGAGCTTGAAAATTTATGAGCAACCTGAGCTTTCTTCGTCCCAGAAGACGCTGCTACAGGAGGGGTATGCAACCTCCCTCGAGGAAAGGACTTGGATGTAAGTCTCCTAAGCTAGATCACAGAACTAGAAAAAGGAAGGCAAAAGTGGCTGACAACAACCATTAACGGTCGAGAAGGTTGACGATTAGAAAGAAAAAGAAAGCAATGGTCAAAGAACCTCAGTCTTCAATCGAATTAGACCGCCTATTGCACGTGCTTTGGTCTTTGAAAGGCTAAGTATGATGGCAACGGAAGAAGAAAACCAGCACCCAACGCCTAGCCTCGATCGGCGCTCAGCTTTTTGAAGGTTGACTATGACCCTCGAAGGAGAAGAGAGCATTTAGTATTCCCCAGTGATAGCTTTACCTTTAGCTTTTGAAAGATTAAGTGTGACCACCAAGAAATGTGACAGAATACCTCGCGGGTCAACCATTGATTGCCTTAAGTGTGTAAGTGTTGAGATGTGCTCTAGCAAAAATGCATCTTGCGACATGAAAGCTAAAGAGGGAAGTGCTGCTAGTGCAACCATAAGAAGGAAGTGA

mRNA sequence

ATGGGTGACTTTAACTCTCAAAAGGATGAGGCATCCACCGACTCTGCAAAGCCTAAAACTTTGAAAAATGAAAAAGTTTCGAGTTCTCCAGTCTTGCGTTATGTCCCTTTGTCAAGACGTAAGAAGGGAGAGTCTCTATTTGCAAAGTGCTCGAAGGGCTTGAAGGTTGGCGATGTTGAAATCCTAAAAGAGAGTTTCGTTATGCCGCTTACTAGTATCGCAAAGCAAGAAGTTCAGGAACTGAGAGTGGACCTGACAAAAGTGAATCTGCCCGAGAGACGAACGAAGGATGGCTTCGACCTAAATGCTTATAAACTACTAGCAAAGGCGGGCTACAACTTCACGACCCACACTGAGTTCAAGAGCTTGAAAATTTATGAGCAACCTGAGCTTTCTTCGTCCCAGAAGACGCTGCTACAGGAGGGGTATGCAACCTCCCTCGAGGAAAGGACTTGGATAATACCTCGCGGGTCAACCATTGATTGCCTTAAGTGTGTAAGTGTTGAGATGTGCTCTAGCAAAAATGCATCTTGCGACATGAAAGCTAAAGAGGGAAGTGCTGCTAGTGCAACCATAAGAAGGAAGTGA

Coding sequence (CDS)

ATGGGTGACTTTAACTCTCAAAAGGATGAGGCATCCACCGACTCTGCAAAGCCTAAAACTTTGAAAAATGAAAAAGTTTCGAGTTCTCCAGTCTTGCGTTATGTCCCTTTGTCAAGACGTAAGAAGGGAGAGTCTCTATTTGCAAAGTGCTCGAAGGGCTTGAAGGTTGGCGATGTTGAAATCCTAAAAGAGAGTTTCGTTATGCCGCTTACTAGTATCGCAAAGCAAGAAGTTCAGGAACTGAGAGTGGACCTGACAAAAGTGAATCTGCCCGAGAGACGAACGAAGGATGGCTTCGACCTAAATGCTTATAAACTACTAGCAAAGGCGGGCTACAACTTCACGACCCACACTGAGTTCAAGAGCTTGAAAATTTATGAGCAACCTGAGCTTTCTTCGTCCCAGAAGACGCTGCTACAGGAGGGGTATGCAACCTCCCTCGAGGAAAGGACTTGGATAATACCTCGCGGGTCAACCATTGATTGCCTTAAGTGTGTAAGTGTTGAGATGTGCTCTAGCAAAAATGCATCTTGCGACATGAAAGCTAAAGAGGGAAGTGCTGCTAGTGCAACCATAAGAAGGAAGTGA

Protein sequence

MGDFNSQKDEASTDSAKPKTLKNEKVSSSPVLRYVPLSRRKKGESLFAKCSKGLKVGDVEILKESFVMPLTSIAKQEVQELRVDLTKVNLPERRTKDGFDLNAYKLLAKAGYNFTTHTEFKSLKIYEQPELSSSQKTLLQEGYATSLEERTWIIPRGSTIDCLKCVSVEMCSSKNASCDMKAKEGSAASATIRRK
BLAST of Cla007429 vs. TrEMBL
Match: B0F6T3_CUCSA (Gypsy-like retrotransposase OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 1

Query: 21  LKNEKVSSSPVLRYVPLSRRKKGESLFAKCSKGLKVGDVEILKESFVMPLTSIAKQEVQE 80
           LK+E  S+  VL YVP SRR KGES F +  K LKVGD+++LKESF  PLT I KQE+  
Sbjct: 3   LKDENASNPSVLHYVPPSRRMKGESSFVESPKDLKVGDIKVLKESFTTPLTKIMKQEI-- 62

Query: 81  LRVDLTKVNLPERRTKDGFDLNAYKLLAKAG 112
            ++DL + NLP+RR KD FD  A KL+AKAG
Sbjct: 63  -KIDLMEENLPQRRMKDKFDSKACKLMAKAG 90

BLAST of Cla007429 vs. TrEMBL
Match: A5C5C0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007094 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.4e-08
Identity = 45/151 (29.80%), Postives = 79/151 (52.32%), Query Frame = 1

Query: 10  EASTDSAKPKTLKNEKVSSSPVLRYVPLSRRKKGESLFAKCS-----KGLKVGDVEILKE 69
           E    S++  T+    V +SPV + +P SRR +G+  F +       + L+ GD+++LKE
Sbjct: 164 EEKGKSSQTATMDLMIVXTSPVFKCIPRSRRSEGQPPFIEDKSEVQPRRLENGDLQVLKE 223

Query: 70  SFVMPLTSI-------AKQEVQELRVDLTKVNLPERRTKDGFDLNAYKLLAKAGYNFTTH 129
              + L ++        ++ ++ LR    K   P ++  +GF+  AYKLLAKAGY+F + 
Sbjct: 224 VVTILLPNLQLIFRDDTQKSIKSLRDQTKKELFPIKKIDEGFNPKAYKLLAKAGYDFISS 283

Query: 130 TEFKSLKI----YEQPELSSSQKTLLQEGYA 145
           ++   L       +   L+ +Q+ L Q+GYA
Sbjct: 284 SQLGELSPETTGXKMHGLNETQRKLKQQGYA 314

BLAST of Cla007429 vs. TrEMBL
Match: E4Z8P4_MALDO (Putative uncharacterized protein OS=Malus domestica PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = 1

Query: 10  EASTDSAKPKTLKNEKVSSSPVLRYVPLSRRKKGESLFA----KCSKGLKVGDVEILKES 69
           E+ T S  P TL         V +Y+P+ RRK G+S F     K +  L  GDV++ K +
Sbjct: 697 ESVTPSKGPNTL---------VFQYIPVLRRKNGQSPFETGIRKANTQLHKGDVKLHKTN 756

Query: 70  FVMPLTSIAKQEVQE-----LRVDLTKVNLPERRTK---DGFDLNAYKLLAKAGYNFTTH 129
            ++PLT +   +V +     L+  L        RTK   + FD N YK+++KAGY+FT+ 
Sbjct: 757 AILPLTQLGDTKVSKPPQGFLKPLLKGTEPSSLRTKMIEECFDPNTYKVMSKAGYDFTSS 816

Query: 130 TEFKSLKIYEQPELSSSQKTLLQEGYAT 146
           +        ++ +L  ++K L + GY +
Sbjct: 817 SNLGKKNNNKEHDLIETKKKLNEHGYGS 835

BLAST of Cla007429 vs. NCBI nr
Match: gi|778660504|ref|XP_011656345.1| (PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 2.3e-43
Identity = 93/147 (63.27%), Postives = 116/147 (78.91%), Query Frame = 1

Query: 4   FNSQKDEASTDSAKPKTLKNEKVSSSPVLRYVPLSRRKKGESLFAKCSKGLKVGDVEILK 63
           FNS K E  T + K   LK+E  +++PVLRYVPLSRRKKGES F +  KGLKVGD+EI+K
Sbjct: 404 FNSGKGETYTRNTKGMILKDENAANTPVLRYVPLSRRKKGESPFMESPKGLKVGDIEIIK 463

Query: 64  ESFVMPLTSIAKQEVQELRVDLTKVNLPERRTKDGFDLNAYKLLAKAGYNFTTHTEFKSL 123
           ESF  PLT IAKQEV   +VDL + NLP+RRTKDGFD  AYKL+AKAGY+FT HTEFKSL
Sbjct: 464 ESFTTPLTKIAKQEV---KVDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSL 523

Query: 124 KIYEQPELSSSQKTLLQEGYATSLEER 151
           +I+++PELSS+QK LL+EG++  +  +
Sbjct: 524 EIHDRPELSSTQKKLLREGHSIPVSRK 547

BLAST of Cla007429 vs. NCBI nr
Match: gi|659113191|ref|XP_008456446.1| (PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-33
Identity = 86/167 (51.50%), Postives = 113/167 (67.66%), Query Frame = 1

Query: 10  EASTDSAKPKTLKNEKVSSSPVLRYVPLSRRKKGESLFAKCSKGLKVGDVEILKESFVMP 69
           EAST +AK   L +EK S+ P+LRYVPLSRRKKGES F + S+ LKVGD+E+L+ESF  P
Sbjct: 178 EASTSTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESSQALKVGDIEVLRESFTTP 237

Query: 70  LTSIAKQEVQELRVDLTKVNLPERRTKDGFDLNAYKLLAKAGYNFTTHTEFKSLKIYEQP 129
           LT I KQE    + D T+ +LP+RRTKDGFD  AYKL+AKAGY+FTTH EFK+ +   + 
Sbjct: 238 LTKITKQET---KTDQTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHIEFKNSE-QGEG 297

Query: 130 ELSSSQKTLLQEGYATSLEERTWIIPRG------STIDCLKCVSVEM 171
           ++S    T+L+E    + EE     P+       ST+D LK + VE+
Sbjct: 298 KISCHHITILEELEIETPEEDAEDAPQSLENSGQSTVDELKEIEVEV 340

BLAST of Cla007429 vs. NCBI nr
Match: gi|659099164|ref|XP_008450461.1| (PREDICTED: uncharacterized protein LOC103492056 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 8.3e-25
Identity = 68/125 (54.40%), Postives = 84/125 (67.20%), Query Frame = 1

Query: 5   NSQKDEASTDSAKPKTLKNEK-------VSSSPVLRYVPLSRRKKGESLFAKCSKGLKVG 64
           NSQ++  ST   K +  K EK       VS+  VLRY+PLSRR+KGES FA+CSK L V 
Sbjct: 14  NSQQNGESTTEIKLRAPKAEKIATLQKEVSNPTVLRYIPLSRREKGESPFAECSKNLTVK 73

Query: 65  DVEILKESFVMPLTSIAKQEVQELRVDLTKVNLPERRTKDGFDLNAYKLLAKAGYNFTTH 123
           + EILKE+F  PLT I K E +++     +  LPERRT +GFD  AYKL+AKAGY+FTT 
Sbjct: 74  NTEILKENFTAPLTKIEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTR 133

BLAST of Cla007429 vs. NCBI nr
Match: gi|778697752|ref|XP_011654390.1| (PREDICTED: uncharacterized protein LOC105435379 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 8.0e-20
Identity = 59/124 (47.58%), Postives = 74/124 (59.68%), Query Frame = 1

Query: 7   QKDEASTDSAK---PK----TLKNEKVSSSPVLRYVPLSRRKKGESLFAKCSKGLKVGDV 66
           Q ++ ST  AK   PK    TL  EK +  P+LRYVPLSRRK GES   +  + L +G +
Sbjct: 151 QNNDESTTQAKSEVPKSEKITLPQEKATKPPILRYVPLSRRKNGESSITEYPENLMIGSI 210

Query: 67  EILKESFVMPLTSIAKQEVQELRVDLTKVNLPERRTKDGFDLNAYKLLAKAGYNFTTHTE 124
           EIL+ESF  PLT I K E + L+    +  LP+RR   GFD  AY L+AK GY+FTT   
Sbjct: 211 EILEESFTTPLTKIEKGETKRLKTKSVEAFLPKRRITGGFDQKAYTLMAKVGYDFTTLVN 270

BLAST of Cla007429 vs. NCBI nr
Match: gi|164449253|gb|ABY56083.1| (gypsy-like retrotransposase [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 1

Query: 21  LKNEKVSSSPVLRYVPLSRRKKGESLFAKCSKGLKVGDVEILKESFVMPLTSIAKQEVQE 80
           LK+E  S+  VL YVP SRR KGES F +  K LKVGD+++LKESF  PLT I KQE+  
Sbjct: 3   LKDENASNPSVLHYVPPSRRMKGESSFVESPKDLKVGDIKVLKESFTTPLTKIMKQEI-- 62

Query: 81  LRVDLTKVNLPERRTKDGFDLNAYKLLAKAG 112
            ++DL + NLP+RR KD FD  A KL+AKAG
Sbjct: 63  -KIDLMEENLPQRRMKDKFDSKACKLMAKAG 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
B0F6T3_CUCSA1.4e-1858.24Gypsy-like retrotransposase OS=Cucumis sativus PE=4 SV=1[more]
A5C5C0_VITVI8.4e-0829.80Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007094 PE=4 SV=1[more]
E4Z8P4_MALDO2.4e-0731.08Putative uncharacterized protein OS=Malus domestica PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778660504|ref|XP_011656345.1|2.3e-4363.27PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus][more]
gi|659113191|ref|XP_008456446.1|1.7e-3351.50PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo][more]
gi|659099164|ref|XP_008450461.1|8.3e-2554.40PREDICTED: uncharacterized protein LOC103492056 [Cucumis melo][more]
gi|778697752|ref|XP_011654390.1|8.0e-2047.58PREDICTED: uncharacterized protein LOC105435379 [Cucumis sativus][more]
gi|164449253|gb|ABY56083.1|2.0e-1858.24gypsy-like retrotransposase [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007429Cla007429.1mRNA