Cla007416 (gene) Watermelon (97103) v1

Overview
NameCla007416
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 22894121 .. 22894870 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGTTTGATAGATGTAAAGTCCCTTTCAATGCCAGAGAGATAAACGCGGTTTTCAAGTTAAGGGACGACCTAGATGCAGAAGGAAATAAGCTGATAGAAGACGCATCGCATGATCACATGCAAGATGCGATTCAGGTCATGGCCAAGCTGAGGTTAAAGTGGGACGTATCACCCACAGGCATTAGAACTTTGCCTGCCAACTGCCTCTTGCCCGAGGCCAATATATGGGTATACTTCGTCAAGAAGCAGCTCATCCCAACAACTCACGACAAAACAGTCTCAAGGGATCGAGTGATGGCAGCATACTACATTATGCAAGGCATCTGTCTGGACATAGGACACATAATAGCAGCTCAGATTAGGGGTGTCTTCAGCAAATCAAGAGGTCAGTTGTTCTTTCCTTGGTTGATAATGAGCCTCTATGTGAATGCTGCCATTGGGAGTTCTATTGAAGTGTTGAACGCAGAGCAGATGCTTCTAGTCAATGGCATTATCACCATCAAAACACTGTGTCGGTTGATAAGGGGTTCTCAACATCAACCAGGTCCTACAAAGATACCCAAAGGAACCTCCCAACCACTTCCTACCCCAGCAACCCCAACCATTAAGTCGCCTAAGACAAAGGAGAAAGGGAAGAAATCCAAACTCAAACCCAAAGTCATGATAGGTCCTGATGTCCATGACTTAGACGCAAACCCTTCCTCTCCTCAATTTTCGCCTCCACTTCCACTTACCCCAAGATAA

mRNA sequence

ATGGTGGTGTTTGATAGATGTAAAGTCCCTTTCAATGCCAGAGAGATAAACGCGGTTTTCAAGTTAAGGGACGACCTAGATGCAGAAGGAAATAAGCTGATAGAAGACGCATCGCATGATCACATGCAAGATGCGATTCAGGTCATGGCCAAGCTGAGGTTAAAGTGGGACGTATCACCCACAGGCATTAGAACTTTGCCTGCCAACTGCCTCTTGCCCGAGGCCAATATATGGGTATACTTCGTCAAGAAGCAGCTCATCCCAACAACTCACGACAAAACAGTCTCAAGGGATCGAGTGATGGCAGCATACTACATTATGCAAGGCATCTGTCTGGACATAGGACACATAATAGCAGCTCAGATTAGGGGTGTCTTCAGCAAATCAAGAGGTCAGTTGTTCTTTCCTTGGTTGATAATGAGCCTCTATGTGAATGCTGCCATTGGGAGTTCTATTGAAGTGTTGAACGCAGAGCAGATGCTTCTAGTCAATGGCATTATCACCATCAAAACACTGTGTCGGTTGATAAGGGGTTCTCAACATCAACCAGGTCCTACAAAGATACCCAAAGGAACCTCCCAACCACTTCCTACCCCAGCAACCCCAACCATTAAGTCGCCTAAGACAAAGGAGAAAGGGAAGAAATCCAAACTCAAACCCAAAGTCATGATAGGTCCTGATGTCCATGACTTAGACGCAAACCCTTCCTCTCCTCAATTTTCGCCTCCACTTCCACTTACCCCAAGATAA

Coding sequence (CDS)

ATGGTGGTGTTTGATAGATGTAAAGTCCCTTTCAATGCCAGAGAGATAAACGCGGTTTTCAAGTTAAGGGACGACCTAGATGCAGAAGGAAATAAGCTGATAGAAGACGCATCGCATGATCACATGCAAGATGCGATTCAGGTCATGGCCAAGCTGAGGTTAAAGTGGGACGTATCACCCACAGGCATTAGAACTTTGCCTGCCAACTGCCTCTTGCCCGAGGCCAATATATGGGTATACTTCGTCAAGAAGCAGCTCATCCCAACAACTCACGACAAAACAGTCTCAAGGGATCGAGTGATGGCAGCATACTACATTATGCAAGGCATCTGTCTGGACATAGGACACATAATAGCAGCTCAGATTAGGGGTGTCTTCAGCAAATCAAGAGGTCAGTTGTTCTTTCCTTGGTTGATAATGAGCCTCTATGTGAATGCTGCCATTGGGAGTTCTATTGAAGTGTTGAACGCAGAGCAGATGCTTCTAGTCAATGGCATTATCACCATCAAAACACTGTGTCGGTTGATAAGGGGTTCTCAACATCAACCAGGTCCTACAAAGATACCCAAAGGAACCTCCCAACCACTTCCTACCCCAGCAACCCCAACCATTAAGTCGCCTAAGACAAAGGAGAAAGGGAAGAAATCCAAACTCAAACCCAAAGTCATGATAGGTCCTGATGTCCATGACTTAGACGCAAACCCTTCCTCTCCTCAATTTTCGCCTCCACTTCCACTTACCCCAAGATAA

Protein sequence

MVVFDRCKVPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSKSRGQLFFPWLIMSLYVNAAIGSSIEVLNAEQMLLVNGIITIKTLCRLIRGSQHQPGPTKIPKGTSQPLPTPATPTIKSPKTKEKGKKSKLKPKVMIGPDVHDLDANPSSPQFSPPLPLTPR
Homology
[Close]
BLAST of Cla007416 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 49/148 (33.11%), Postives = 80/148 (54.05%), Query Frame = 1 

Query: 2   VVFDRCKVPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPT 61
           V     KVPF AR IN++F L + +D E      + + + ++  +  +A     W +SP 
Sbjct: 46  VFVQNVKVPFTARAINSIFGLEEVVD-EYVDFASEVTDEQLEVVLAEVAIEGATWQISPQ 105

Query: 62  GIRTLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQ 121
           G  T     L   A IW +F+  + +P+TH KTV++DRV+  Y I+ GI ++I  I   +
Sbjct: 106 GAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVLLLYSILTGISVNIEEITIKE 165

Query: 122 IRGV-FSKSRGQLFFPWLIMSLYVNAAI 149
           I+    ++ RG L+FP LI  L++ A +
Sbjct: 166 IKACSAARKRGGLYFPSLITQLWLKANV 192

[Close]
BLAST of Cla007416 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.0e-13
Identity = 44/140 (31.43%), Postives = 79/140 (56.43%), Query Frame = 1 

Query: 9   VPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPA 68
           + F +  IN V  + +  D E  +LI DA  + +++ ++ +A L  +W +S  G  T   
Sbjct: 125 ITFTSNYINGVLGIPNQ-DDEFVELITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNR 184

Query: 69  NCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSK 128
           + L P A +W +F+  +L+ +TH KT+SR+R +  Y ++ G  +++G +I  QIR    K
Sbjct: 185 HELQPAAKVWYHFLASRLLLSTHGKTISRNRAILLYAVLVGKPINVGRLIIDQIRACAEK 244

Query: 129 SRGQLFFPWLIMSLYVNAAI 149
            +G L+FP LI  L + + +
Sbjct: 245 GKGGLYFPSLISELCIQSHV 263

[Close]
BLAST of Cla007416 vs. TrEMBL
Match: W9S7D3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.7e-10
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 1 

Query: 16  INAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPANCLLPEA 75
           IN+++ L  D++   N   +  + D + + I  +     +W  +  G  T P  CL P  
Sbjct: 99  INSLYDL-PDVEDHFNSFADSLNEDQLDEVINELCVEGTEWWRATRGSMTFPKECLQPGP 158

Query: 76  NIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSKSRGQLFF 135
            IW +F++ +L+P++H + V ++R +  Y +M+G  L++G +I  Q+     +  G L+F
Sbjct: 159 KIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWF 218

Query: 136 PWLIMSLYVNAAIGSSIE 154
           P LI  L +  A G SIE
Sbjct: 219 PSLITQLCI--AHGVSIE 233

[Close]
BLAST of Cla007416 vs. TrEMBL
Match: W9RK06_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000483 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 31/114 (27.19%), Postives = 63/114 (55.26%), Query Frame = 1 

Query: 9   VPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPA 68
           +PF +  IN+++ L  D++   N   +  + D + + I  +     +W  +  G  T P 
Sbjct: 115 IPFTSEAINSLYDL-PDVEDHFNNFADSLNEDQLDEVINELCVEGTEWRRATRGSMTFPR 174

Query: 69  NCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQI 123
            CL P + IW +F++ +L+P++H + V ++R +  Y +M+G  L++G +I  Q+
Sbjct: 175 ECLQPGSKIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPLNVGRMIRQQL 227

[Close]
BLAST of Cla007416 vs. TrEMBL
Match: W9RPD1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026905 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 40/144 (27.78%), Postives = 69/144 (47.92%), Query Frame = 1 

Query: 65  TLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRG 124
           T P  CL P   IW +F++ +L+P++H + V ++R +  + +M+G  L++G +I  Q+  
Sbjct: 2   TFPRECLQPGPKIWYHFLRFRLMPSSHYRLVHKERAILLHCMMKGRPLNVGRMIHQQVGV 61

Query: 125 VFSKSRGQLFFPWLIMSLYVNAAIGSSIEVLNAEQMLLVNGIITIKTLCRLIRGSQHQ-- 184
                 G L+FP LI  L +  A G S+E    ++    +  I+   L RL+     +  
Sbjct: 62  CAGHRNGGLWFPSLITQLCI--AHGVSVEKHETKEP--PSAAISTFVLARLLHDDAQEEE 121

Query: 185 --PGPTKIPKGTSQPLPTPATPTI 205
             P P        +P   P +P I
Sbjct: 122 AAPAPAANAPHLGEPTAEPNSPDI 141

[Close]
BLAST of Cla007416 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 49/148 (33.11%), Postives = 80/148 (54.05%), Query Frame = 1 

Query: 2   VVFDRCKVPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPT 61
           V     KVPF AR IN++F L + +D E      + + + ++  +  +A     W +SP 
Sbjct: 46  VFVQNVKVPFTARAINSIFGLEEVVD-EYVDFASEVTDEQLEVVLAEVAIEGATWQISPQ 105

Query: 62  GIRTLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQ 121
           G  T     L   A IW +F+  + +P+TH KTV++DRV+  Y I+ GI ++I  I   +
Sbjct: 106 GAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVLLLYSILTGISVNIEEITIKE 165

Query: 122 IRGV-FSKSRGQLFFPWLIMSLYVNAAI 149
           I+    ++ RG L+FP LI  L++ A +
Sbjct: 166 IKACSAARKRGGLYFPSLITQLWLKANV 192

[Close]
BLAST of Cla007416 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 83.2 bits (204), Expect = 7.1e-13
Identity = 44/140 (31.43%), Postives = 79/140 (56.43%), Query Frame = 1 

Query: 9   VPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPA 68
           + F +  IN V  + +  D E  +LI DA  + +++ ++ +A L  +W +S  G  T   
Sbjct: 125 ITFTSNYINGVLGIPNQ-DDEFVELITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNR 184

Query: 69  NCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSK 128
           + L P A +W +F+  +L+ +TH KT+SR+R +  Y ++ G  +++G +I  QIR    K
Sbjct: 185 HELQPAAKVWYHFLASRLLLSTHGKTISRNRAILLYAVLVGKPINVGRLIIDQIRACAEK 244

Query: 129 SRGQLFFPWLIMSLYVNAAI 149
            +G L+FP LI  L + + +
Sbjct: 245 GKGGLYFPSLISELCIQSHV 263

[Close]
BLAST of Cla007416 vs. NCBI nr
Match: gi|703121924|ref|XP_010102456.1| (hypothetical protein L484_006967 [Morus notabilis])

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 1 

Query: 16  INAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPANCLLPEA 75
           IN+++ L  D++   N   +  + D + + I  +     +W  +  G  T P  CL P  
Sbjct: 99  INSLYDL-PDVEDHFNSFADSLNEDQLDEVINELCVEGTEWWRATRGSMTFPKECLQPGP 158

Query: 76  NIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSKSRGQLFF 135
            IW +F++ +L+P++H + V ++R +  Y +M+G  L++G +I  Q+     +  G L+F
Sbjct: 159 KIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWF 218

Query: 136 PWLIMSLYVNAAIGSSIE 154
           P LI  L +  A G SIE
Sbjct: 219 PSLITQLCI--AHGVSIE 233

[Close]
BLAST of Cla007416 vs. NCBI nr
Match: gi|703109223|ref|XP_010099236.1| (hypothetical protein L484_000483 [Morus notabilis])

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 31/114 (27.19%), Postives = 63/114 (55.26%), Query Frame = 1 

Query: 9   VPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPA 68
           +PF +  IN+++ L  D++   N   +  + D + + I  +     +W  +  G  T P 
Sbjct: 115 IPFTSEAINSLYDL-PDVEDHFNNFADSLNEDQLDEVINELCVEGTEWRRATRGSMTFPR 174

Query: 69  NCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQI 123
            CL P + IW +F++ +L+P++H + V ++R +  Y +M+G  L++G +I  Q+
Sbjct: 175 ECLQPGSKIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPLNVGRMIRQQL 227

[Close]
BLAST of Cla007416 vs. NCBI nr
Match: gi|590666924|ref|XP_007037100.1| (Uncharacterized protein TCM_013502 [Theobroma cacao])

HSP 1 Score: 60.5 bits (145), Expect = 4.9e-06
Identity = 39/117 (33.33%), Postives = 58/117 (49.57%), Query Frame = 1 

Query: 3   VFDRCK-VPFNAREINAVFKLRD-DLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSP 62
           VF R K VPF++  IN  ++  D   +  G  L E   H+   D I ++ +   +     
Sbjct: 37  VFGRSKLVPFSSHAINEFYETTDIKSNGYGQYLGE---HEDWDDIIHILYEESAQCRFFN 96

Query: 63  TGIRTLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHI 118
               +   N + P   IW+YFV  +L+PTTH   V +DR +  + IM G  +DIGHI
Sbjct: 97  NTPVSFKKNVMKPTYKIWLYFVASKLLPTTHTSNVMKDRAIPIHSIMIGCTIDIGHI 150

The following BLAST results are available for this feature:
BLAST of Cla007416 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QTD9_9ROSA1.0e-1333.11Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1[more]
W9RBS1_9ROSA5.0e-1331.43Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1[more]
W9S7D3_9ROSA8.7e-1029.71Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1[more]
W9RK06_9ROSA1.6e-0827.19Uncharacterized protein OS=Morus notabilis GN=L484_000483 PE=4 SV=1[more]
W9RPD1_9ROSA3.4e-0627.78Uncharacterized protein OS=Morus notabilis GN=L484_026905 PE=4 SV=1[more]
BLAST of Cla007416 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703087370|ref|XP_010093253.1|1.4e-1333.11hypothetical protein L484_022412 [Morus notabilis][more]
gi|703082781|ref|XP_010092041.1|7.1e-1331.43hypothetical protein L484_000844 [Morus notabilis][more]
gi|703121924|ref|XP_010102456.1|1.3e-0929.71hypothetical protein L484_006967 [Morus notabilis][more]
gi|703109223|ref|XP_010099236.1|2.4e-0827.19hypothetical protein L484_000483 [Morus notabilis][more]
gi|590666924|ref|XP_007037100.1|4.9e-0633.33Uncharacterized protein TCM_013502 [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007416Cla007416.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla007416Cucurbita pepo (Zucchini)cpewmB563
Cla007416Cucurbita pepo (Zucchini)cpewmB768
Cla007416Bottle gourd (USVL1VR-Ls)lsiwmB319
Cla007416Cucumber (Gy14) v2cgybwmB235
Cla007416Silver-seed gourdcarwmB0103
Cla007416Cucumber (Chinese Long) v3cucwmB258
Cla007416Watermelon (97103) v2wmwmbB207
Cla007416Cucurbita maxima (Rimu)cmawmB029
Cla007416Cucurbita maxima (Rimu)cmawmB444
Cla007416Cucurbita moschata (Rifu)cmowmB021
Cla007416Cucurbita moschata (Rifu)cmowmB437
Cla007416Melon (DHL92) v3.5.1mewmB369
Cla007416Watermelon (Charleston Gray)wcgwmB285
Cla007416Cucumber (Chinese Long) v2cuwmB250