Cla007416 (gene) Watermelon (97103) v1

NameCla007416
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 22894121 .. 22894870 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGTTTGATAGATGTAAAGTCCCTTTCAATGCCAGAGAGATAAACGCGGTTTTCAAGTTAAGGGACGACCTAGATGCAGAAGGAAATAAGCTGATAGAAGACGCATCGCATGATCACATGCAAGATGCGATTCAGGTCATGGCCAAGCTGAGGTTAAAGTGGGACGTATCACCCACAGGCATTAGAACTTTGCCTGCCAACTGCCTCTTGCCCGAGGCCAATATATGGGTATACTTCGTCAAGAAGCAGCTCATCCCAACAACTCACGACAAAACAGTCTCAAGGGATCGAGTGATGGCAGCATACTACATTATGCAAGGCATCTGTCTGGACATAGGACACATAATAGCAGCTCAGATTAGGGGTGTCTTCAGCAAATCAAGAGGTCAGTTGTTCTTTCCTTGGTTGATAATGAGCCTCTATGTGAATGCTGCCATTGGGAGTTCTATTGAAGTGTTGAACGCAGAGCAGATGCTTCTAGTCAATGGCATTATCACCATCAAAACACTGTGTCGGTTGATAAGGGGTTCTCAACATCAACCAGGTCCTACAAAGATACCCAAAGGAACCTCCCAACCACTTCCTACCCCAGCAACCCCAACCATTAAGTCGCCTAAGACAAAGGAGAAAGGGAAGAAATCCAAACTCAAACCCAAAGTCATGATAGGTCCTGATGTCCATGACTTAGACGCAAACCCTTCCTCTCCTCAATTTTCGCCTCCACTTCCACTTACCCCAAGATAA

mRNA sequence

ATGGTGGTGTTTGATAGATGTAAAGTCCCTTTCAATGCCAGAGAGATAAACGCGGTTTTCAAGTTAAGGGACGACCTAGATGCAGAAGGAAATAAGCTGATAGAAGACGCATCGCATGATCACATGCAAGATGCGATTCAGGTCATGGCCAAGCTGAGGTTAAAGTGGGACGTATCACCCACAGGCATTAGAACTTTGCCTGCCAACTGCCTCTTGCCCGAGGCCAATATATGGGTATACTTCGTCAAGAAGCAGCTCATCCCAACAACTCACGACAAAACAGTCTCAAGGGATCGAGTGATGGCAGCATACTACATTATGCAAGGCATCTGTCTGGACATAGGACACATAATAGCAGCTCAGATTAGGGGTGTCTTCAGCAAATCAAGAGGTCAGTTGTTCTTTCCTTGGTTGATAATGAGCCTCTATGTGAATGCTGCCATTGGGAGTTCTATTGAAGTGTTGAACGCAGAGCAGATGCTTCTAGTCAATGGCATTATCACCATCAAAACACTGTGTCGGTTGATAAGGGGTTCTCAACATCAACCAGGTCCTACAAAGATACCCAAAGGAACCTCCCAACCACTTCCTACCCCAGCAACCCCAACCATTAAGTCGCCTAAGACAAAGGAGAAAGGGAAGAAATCCAAACTCAAACCCAAAGTCATGATAGGTCCTGATGTCCATGACTTAGACGCAAACCCTTCCTCTCCTCAATTTTCGCCTCCACTTCCACTTACCCCAAGATAA

Coding sequence (CDS)

ATGGTGGTGTTTGATAGATGTAAAGTCCCTTTCAATGCCAGAGAGATAAACGCGGTTTTCAAGTTAAGGGACGACCTAGATGCAGAAGGAAATAAGCTGATAGAAGACGCATCGCATGATCACATGCAAGATGCGATTCAGGTCATGGCCAAGCTGAGGTTAAAGTGGGACGTATCACCCACAGGCATTAGAACTTTGCCTGCCAACTGCCTCTTGCCCGAGGCCAATATATGGGTATACTTCGTCAAGAAGCAGCTCATCCCAACAACTCACGACAAAACAGTCTCAAGGGATCGAGTGATGGCAGCATACTACATTATGCAAGGCATCTGTCTGGACATAGGACACATAATAGCAGCTCAGATTAGGGGTGTCTTCAGCAAATCAAGAGGTCAGTTGTTCTTTCCTTGGTTGATAATGAGCCTCTATGTGAATGCTGCCATTGGGAGTTCTATTGAAGTGTTGAACGCAGAGCAGATGCTTCTAGTCAATGGCATTATCACCATCAAAACACTGTGTCGGTTGATAAGGGGTTCTCAACATCAACCAGGTCCTACAAAGATACCCAAAGGAACCTCCCAACCACTTCCTACCCCAGCAACCCCAACCATTAAGTCGCCTAAGACAAAGGAGAAAGGGAAGAAATCCAAACTCAAACCCAAAGTCATGATAGGTCCTGATGTCCATGACTTAGACGCAAACCCTTCCTCTCCTCAATTTTCGCCTCCACTTCCACTTACCCCAAGATAA

Protein sequence

MVVFDRCKVPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSKSRGQLFFPWLIMSLYVNAAIGSSIEVLNAEQMLLVNGIITIKTLCRLIRGSQHQPGPTKIPKGTSQPLPTPATPTIKSPKTKEKGKKSKLKPKVMIGPDVHDLDANPSSPQFSPPLPLTPR
BLAST of Cla007416 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 49/148 (33.11%), Postives = 80/148 (54.05%), Query Frame = 1

Query: 2   VVFDRCKVPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPT 61
           V     KVPF AR IN++F L + +D E      + + + ++  +  +A     W +SP 
Sbjct: 46  VFVQNVKVPFTARAINSIFGLEEVVD-EYVDFASEVTDEQLEVVLAEVAIEGATWQISPQ 105

Query: 62  GIRTLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQ 121
           G  T     L   A IW +F+  + +P+TH KTV++DRV+  Y I+ GI ++I  I   +
Sbjct: 106 GAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVLLLYSILTGISVNIEEITIKE 165

Query: 122 IRGV-FSKSRGQLFFPWLIMSLYVNAAI 149
           I+    ++ RG L+FP LI  L++ A +
Sbjct: 166 IKACSAARKRGGLYFPSLITQLWLKANV 192

BLAST of Cla007416 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.0e-13
Identity = 44/140 (31.43%), Postives = 79/140 (56.43%), Query Frame = 1

Query: 9   VPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPA 68
           + F +  IN V  + +  D E  +LI DA  + +++ ++ +A L  +W +S  G  T   
Sbjct: 125 ITFTSNYINGVLGIPNQ-DDEFVELITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNR 184

Query: 69  NCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSK 128
           + L P A +W +F+  +L+ +TH KT+SR+R +  Y ++ G  +++G +I  QIR    K
Sbjct: 185 HELQPAAKVWYHFLASRLLLSTHGKTISRNRAILLYAVLVGKPINVGRLIIDQIRACAEK 244

Query: 129 SRGQLFFPWLIMSLYVNAAI 149
            +G L+FP LI  L + + +
Sbjct: 245 GKGGLYFPSLISELCIQSHV 263

BLAST of Cla007416 vs. TrEMBL
Match: W9S7D3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.7e-10
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 1

Query: 16  INAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPANCLLPEA 75
           IN+++ L  D++   N   +  + D + + I  +     +W  +  G  T P  CL P  
Sbjct: 99  INSLYDL-PDVEDHFNSFADSLNEDQLDEVINELCVEGTEWWRATRGSMTFPKECLQPGP 158

Query: 76  NIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSKSRGQLFF 135
            IW +F++ +L+P++H + V ++R +  Y +M+G  L++G +I  Q+     +  G L+F
Sbjct: 159 KIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWF 218

Query: 136 PWLIMSLYVNAAIGSSIE 154
           P LI  L +  A G SIE
Sbjct: 219 PSLITQLCI--AHGVSIE 233

BLAST of Cla007416 vs. TrEMBL
Match: W9RK06_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000483 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 31/114 (27.19%), Postives = 63/114 (55.26%), Query Frame = 1

Query: 9   VPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPA 68
           +PF +  IN+++ L  D++   N   +  + D + + I  +     +W  +  G  T P 
Sbjct: 115 IPFTSEAINSLYDL-PDVEDHFNNFADSLNEDQLDEVINELCVEGTEWRRATRGSMTFPR 174

Query: 69  NCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQI 123
            CL P + IW +F++ +L+P++H + V ++R +  Y +M+G  L++G +I  Q+
Sbjct: 175 ECLQPGSKIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPLNVGRMIRQQL 227

BLAST of Cla007416 vs. TrEMBL
Match: W9RPD1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026905 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 40/144 (27.78%), Postives = 69/144 (47.92%), Query Frame = 1

Query: 65  TLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRG 124
           T P  CL P   IW +F++ +L+P++H + V ++R +  + +M+G  L++G +I  Q+  
Sbjct: 2   TFPRECLQPGPKIWYHFLRFRLMPSSHYRLVHKERAILLHCMMKGRPLNVGRMIHQQVGV 61

Query: 125 VFSKSRGQLFFPWLIMSLYVNAAIGSSIEVLNAEQMLLVNGIITIKTLCRLIRGSQHQ-- 184
                 G L+FP LI  L +  A G S+E    ++    +  I+   L RL+     +  
Sbjct: 62  CAGHRNGGLWFPSLITQLCI--AHGVSVEKHETKEP--PSAAISTFVLARLLHDDAQEEE 121

Query: 185 --PGPTKIPKGTSQPLPTPATPTI 205
             P P        +P   P +P I
Sbjct: 122 AAPAPAANAPHLGEPTAEPNSPDI 141

BLAST of Cla007416 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 49/148 (33.11%), Postives = 80/148 (54.05%), Query Frame = 1

Query: 2   VVFDRCKVPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPT 61
           V     KVPF AR IN++F L + +D E      + + + ++  +  +A     W +SP 
Sbjct: 46  VFVQNVKVPFTARAINSIFGLEEVVD-EYVDFASEVTDEQLEVVLAEVAIEGATWQISPQ 105

Query: 62  GIRTLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQ 121
           G  T     L   A IW +F+  + +P+TH KTV++DRV+  Y I+ GI ++I  I   +
Sbjct: 106 GAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVLLLYSILTGISVNIEEITIKE 165

Query: 122 IRGV-FSKSRGQLFFPWLIMSLYVNAAI 149
           I+    ++ RG L+FP LI  L++ A +
Sbjct: 166 IKACSAARKRGGLYFPSLITQLWLKANV 192

BLAST of Cla007416 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 83.2 bits (204), Expect = 7.1e-13
Identity = 44/140 (31.43%), Postives = 79/140 (56.43%), Query Frame = 1

Query: 9   VPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPA 68
           + F +  IN V  + +  D E  +LI DA  + +++ ++ +A L  +W +S  G  T   
Sbjct: 125 ITFTSNYINGVLGIPNQ-DDEFVELITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNR 184

Query: 69  NCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSK 128
           + L P A +W +F+  +L+ +TH KT+SR+R +  Y ++ G  +++G +I  QIR    K
Sbjct: 185 HELQPAAKVWYHFLASRLLLSTHGKTISRNRAILLYAVLVGKPINVGRLIIDQIRACAEK 244

Query: 129 SRGQLFFPWLIMSLYVNAAI 149
            +G L+FP LI  L + + +
Sbjct: 245 GKGGLYFPSLISELCIQSHV 263

BLAST of Cla007416 vs. NCBI nr
Match: gi|703121924|ref|XP_010102456.1| (hypothetical protein L484_006967 [Morus notabilis])

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 1

Query: 16  INAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPANCLLPEA 75
           IN+++ L  D++   N   +  + D + + I  +     +W  +  G  T P  CL P  
Sbjct: 99  INSLYDL-PDVEDHFNSFADSLNEDQLDEVINELCVEGTEWWRATRGSMTFPKECLQPGP 158

Query: 76  NIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSKSRGQLFF 135
            IW +F++ +L+P++H + V ++R +  Y +M+G  L++G +I  Q+     +  G L+F
Sbjct: 159 KIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWF 218

Query: 136 PWLIMSLYVNAAIGSSIE 154
           P LI  L +  A G SIE
Sbjct: 219 PSLITQLCI--AHGVSIE 233

BLAST of Cla007416 vs. NCBI nr
Match: gi|703109223|ref|XP_010099236.1| (hypothetical protein L484_000483 [Morus notabilis])

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 31/114 (27.19%), Postives = 63/114 (55.26%), Query Frame = 1

Query: 9   VPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPA 68
           +PF +  IN+++ L  D++   N   +  + D + + I  +     +W  +  G  T P 
Sbjct: 115 IPFTSEAINSLYDL-PDVEDHFNNFADSLNEDQLDEVINELCVEGTEWRRATRGSMTFPR 174

Query: 69  NCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQI 123
            CL P + IW +F++ +L+P++H + V ++R +  Y +M+G  L++G +I  Q+
Sbjct: 175 ECLQPGSKIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPLNVGRMIRQQL 227

BLAST of Cla007416 vs. NCBI nr
Match: gi|590666924|ref|XP_007037100.1| (Uncharacterized protein TCM_013502 [Theobroma cacao])

HSP 1 Score: 60.5 bits (145), Expect = 4.9e-06
Identity = 39/117 (33.33%), Postives = 58/117 (49.57%), Query Frame = 1

Query: 3   VFDRCK-VPFNAREINAVFKLRD-DLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSP 62
           VF R K VPF++  IN  ++  D   +  G  L E   H+   D I ++ +   +     
Sbjct: 37  VFGRSKLVPFSSHAINEFYETTDIKSNGYGQYLGE---HEDWDDIIHILYEESAQCRFFN 96

Query: 63  TGIRTLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHI 118
               +   N + P   IW+YFV  +L+PTTH   V +DR +  + IM G  +DIGHI
Sbjct: 97  NTPVSFKKNVMKPTYKIWLYFVASKLLPTTHTSNVMKDRAIPIHSIMIGCTIDIGHI 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
W9QTD9_9ROSA1.0e-1333.11Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1[more]
W9RBS1_9ROSA5.0e-1331.43Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1[more]
W9S7D3_9ROSA8.7e-1029.71Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1[more]
W9RK06_9ROSA1.6e-0827.19Uncharacterized protein OS=Morus notabilis GN=L484_000483 PE=4 SV=1[more]
W9RPD1_9ROSA3.4e-0627.78Uncharacterized protein OS=Morus notabilis GN=L484_026905 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|703087370|ref|XP_010093253.1|1.4e-1333.11hypothetical protein L484_022412 [Morus notabilis][more]
gi|703082781|ref|XP_010092041.1|7.1e-1331.43hypothetical protein L484_000844 [Morus notabilis][more]
gi|703121924|ref|XP_010102456.1|1.3e-0929.71hypothetical protein L484_006967 [Morus notabilis][more]
gi|703109223|ref|XP_010099236.1|2.4e-0827.19hypothetical protein L484_000483 [Morus notabilis][more]
gi|590666924|ref|XP_007037100.1|4.9e-0633.33Uncharacterized protein TCM_013502 [Theobroma cacao][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007416Cla007416.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None