Cla007416 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007416
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 22894121 .. 22894870 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTGTTTGATAGATGTAAAGTCCCTTTCAATGCCAGAGAGATAAACGCGGTTTTCAAGTTAAGGGACGACCTAGATGCAGAAGGAAATAAGCTGATAGAAGACGCATCGCATGATCACATGCAAGATGCGATTCAGGTCATGGCCAAGCTGAGGTTAAAGTGGGACGTATCACCCACAGGCATTAGAACTTTGCCTGCCAACTGCCTCTTGCCCGAGGCCAATATATGGGTATACTTCGTCAAGAAGCAGCTCATCCCAACAACTCACGACAAAACAGTCTCAAGGGATCGAGTGATGGCAGCATACTACATTATGCAAGGCATCTGTCTGGACATAGGACACATAATAGCAGCTCAGATTAGGGGTGTCTTCAGCAAATCAAGAGGTCAGTTGTTCTTTCCTTGGTTGATAATGAGCCTCTATGTGAATGCTGCCATTGGGAGTTCTATTGAAGTGTTGAACGCAGAGCAGATGCTTCTAGTCAATGGCATTATCACCATCAAAACACTGTGTCGGTTGATAAGGGGTTCTCAACATCAACCAGGTCCTACAAAGATACCCAAAGGAACCTCCCAACCACTTCCTACCCCAGCAACCCCAACCATTAAGTCGCCTAAGACAAAGGAGAAAGGGAAGAAATCCAAACTCAAACCCAAAGTCATGATAGGTCCTGATGTCCATGACTTAGACGCAAACCCTTCCTCTCCTCAATTTTCGCCTCCACTTCCACTTACCCCAAGATAA

mRNA sequence

ATGGTGGTGTTTGATAGATGTAAAGTCCCTTTCAATGCCAGAGAGATAAACGCGGTTTTCAAGTTAAGGGACGACCTAGATGCAGAAGGAAATAAGCTGATAGAAGACGCATCGCATGATCACATGCAAGATGCGATTCAGGTCATGGCCAAGCTGAGGTTAAAGTGGGACGTATCACCCACAGGCATTAGAACTTTGCCTGCCAACTGCCTCTTGCCCGAGGCCAATATATGGGTATACTTCGTCAAGAAGCAGCTCATCCCAACAACTCACGACAAAACAGTCTCAAGGGATCGAGTGATGGCAGCATACTACATTATGCAAGGCATCTGTCTGGACATAGGACACATAATAGCAGCTCAGATTAGGGGTGTCTTCAGCAAATCAAGAGGTCAGTTGTTCTTTCCTTGGTTGATAATGAGCCTCTATGTGAATGCTGCCATTGGGAGTTCTATTGAAGTGTTGAACGCAGAGCAGATGCTTCTAGTCAATGGCATTATCACCATCAAAACACTGTGTCGGTTGATAAGGGGTTCTCAACATCAACCAGGTCCTACAAAGATACCCAAAGGAACCTCCCAACCACTTCCTACCCCAGCAACCCCAACCATTAAGTCGCCTAAGACAAAGGAGAAAGGGAAGAAATCCAAACTCAAACCCAAAGTCATGATAGGTCCTGATGTCCATGACTTAGACGCAAACCCTTCCTCTCCTCAATTTTCGCCTCCACTTCCACTTACCCCAAGATAA

Coding sequence (CDS)

ATGGTGGTGTTTGATAGATGTAAAGTCCCTTTCAATGCCAGAGAGATAAACGCGGTTTTCAAGTTAAGGGACGACCTAGATGCAGAAGGAAATAAGCTGATAGAAGACGCATCGCATGATCACATGCAAGATGCGATTCAGGTCATGGCCAAGCTGAGGTTAAAGTGGGACGTATCACCCACAGGCATTAGAACTTTGCCTGCCAACTGCCTCTTGCCCGAGGCCAATATATGGGTATACTTCGTCAAGAAGCAGCTCATCCCAACAACTCACGACAAAACAGTCTCAAGGGATCGAGTGATGGCAGCATACTACATTATGCAAGGCATCTGTCTGGACATAGGACACATAATAGCAGCTCAGATTAGGGGTGTCTTCAGCAAATCAAGAGGTCAGTTGTTCTTTCCTTGGTTGATAATGAGCCTCTATGTGAATGCTGCCATTGGGAGTTCTATTGAAGTGTTGAACGCAGAGCAGATGCTTCTAGTCAATGGCATTATCACCATCAAAACACTGTGTCGGTTGATAAGGGGTTCTCAACATCAACCAGGTCCTACAAAGATACCCAAAGGAACCTCCCAACCACTTCCTACCCCAGCAACCCCAACCATTAAGTCGCCTAAGACAAAGGAGAAAGGGAAGAAATCCAAACTCAAACCCAAAGTCATGATAGGTCCTGATGTCCATGACTTAGACGCAAACCCTTCCTCTCCTCAATTTTCGCCTCCACTTCCACTTACCCCAAGATAA

Protein sequence

MVVFDRCKVPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSKSRGQLFFPWLIMSLYVNAAIGSSIEVLNAEQMLLVNGIITIKTLCRLIRGSQHQPGPTKIPKGTSQPLPTPATPTIKSPKTKEKGKKSKLKPKVMIGPDVHDLDANPSSPQFSPPLPLTPR

Homology

[Close]

BLAST of Cla007416 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 49/148 (33.11%), Postives = 80/148 (54.05%), Query Frame = 1


Query: 2   VVFDRCKVPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPT 61
           V     KVPF AR IN++F L + +D E      + + + ++  +  +A     W +SP 
Sbjct: 46  VFVQNVKVPFTARAINSIFGLEEVVD-EYVDFASEVTDEQLEVVLAEVAIEGATWQISPQ 105

Query: 62  GIRTLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQ 121
           G  T     L   A IW +F+  + +P+TH KTV++DRV+  Y I+ GI ++I  I   +
Sbjct: 106 GAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVLLLYSILTGISVNIEEITIKE 165

Query: 122 IRGV-FSKSRGQLFFPWLIMSLYVNAAI 149
           I+    ++ RG L+FP LI  L++ A +
Sbjct: 166 IKACSAARKRGGLYFPSLITQLWLKANV 192

[Close]

BLAST of Cla007416 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.0e-13
Identity = 44/140 (31.43%), Postives = 79/140 (56.43%), Query Frame = 1


Query: 9   VPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPA 68
           + F +  IN V  + +  D E  +LI DA  + +++ ++ +A L  +W +S  G  T   
Sbjct: 125 ITFTSNYINGVLGIPNQ-DDEFVELITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNR 184

Query: 69  NCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSK 128
           + L P A +W +F+  +L+ +TH KT+SR+R +  Y ++ G  +++G +I  QIR    K
Sbjct: 185 HELQPAAKVWYHFLASRLLLSTHGKTISRNRAILLYAVLVGKPINVGRLIIDQIRACAEK 244

Query: 129 SRGQLFFPWLIMSLYVNAAI 149
            +G L+FP LI  L + + +
Sbjct: 245 GKGGLYFPSLISELCIQSHV 263

[Close]

BLAST of Cla007416 vs. TrEMBL
Match: W9S7D3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.7e-10
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 1


Query: 16  INAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPANCLLPEA 75
           IN+++ L  D++   N   +  + D + + I  +     +W  +  G  T P  CL P  
Sbjct: 99  INSLYDL-PDVEDHFNSFADSLNEDQLDEVINELCVEGTEWWRATRGSMTFPKECLQPGP 158

Query: 76  NIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSKSRGQLFF 135
            IW +F++ +L+P++H + V ++R +  Y +M+G  L++G +I  Q+     +  G L+F
Sbjct: 159 KIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWF 218

Query: 136 PWLIMSLYVNAAIGSSIE 154
           P LI  L +  A G SIE
Sbjct: 219 PSLITQLCI--AHGVSIE 233

[Close]

BLAST of Cla007416 vs. TrEMBL
Match: W9RK06_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000483 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 31/114 (27.19%), Postives = 63/114 (55.26%), Query Frame = 1


Query: 9   VPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPA 68
           +PF +  IN+++ L  D++   N   +  + D + + I  +     +W  +  G  T P 
Sbjct: 115 IPFTSEAINSLYDL-PDVEDHFNNFADSLNEDQLDEVINELCVEGTEWRRATRGSMTFPR 174

Query: 69  NCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQI 123
            CL P + IW +F++ +L+P++H + V ++R +  Y +M+G  L++G +I  Q+
Sbjct: 175 ECLQPGSKIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPLNVGRMIRQQL 227

[Close]

BLAST of Cla007416 vs. TrEMBL
Match: W9RPD1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026905 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 40/144 (27.78%), Postives = 69/144 (47.92%), Query Frame = 1


Query: 65  TLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRG 124
           T P  CL P   IW +F++ +L+P++H + V ++R +  + +M+G  L++G +I  Q+  
Sbjct: 2   TFPRECLQPGPKIWYHFLRFRLMPSSHYRLVHKERAILLHCMMKGRPLNVGRMIHQQVGV 61

Query: 125 VFSKSRGQLFFPWLIMSLYVNAAIGSSIEVLNAEQMLLVNGIITIKTLCRLIRGSQHQ-- 184
                 G L+FP LI  L +  A G S+E    ++    +  I+   L RL+     +  
Sbjct: 62  CAGHRNGGLWFPSLITQLCI--AHGVSVEKHETKEP--PSAAISTFVLARLLHDDAQEEE 121

Query: 185 --PGPTKIPKGTSQPLPTPATPTI 205
             P P        +P   P +P I
Sbjct: 122 AAPAPAANAPHLGEPTAEPNSPDI 141

[Close]

BLAST of Cla007416 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 49/148 (33.11%), Postives = 80/148 (54.05%), Query Frame = 1


Query: 2   VVFDRCKVPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPT 61
           V     KVPF AR IN++F L + +D E      + + + ++  +  +A     W +SP 
Sbjct: 46  VFVQNVKVPFTARAINSIFGLEEVVD-EYVDFASEVTDEQLEVVLAEVAIEGATWQISPQ 105

Query: 62  GIRTLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQ 121
           G  T     L   A IW +F+  + +P+TH KTV++DRV+  Y I+ GI ++I  I   +
Sbjct: 106 GAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVLLLYSILTGISVNIEEITIKE 165

Query: 122 IRGV-FSKSRGQLFFPWLIMSLYVNAAI 149
           I+    ++ RG L+FP LI  L++ A +
Sbjct: 166 IKACSAARKRGGLYFPSLITQLWLKANV 192

[Close]

BLAST of Cla007416 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 83.2 bits (204), Expect = 7.1e-13
Identity = 44/140 (31.43%), Postives = 79/140 (56.43%), Query Frame = 1


Query: 9   VPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPA 68
           + F +  IN V  + +  D E  +LI DA  + +++ ++ +A L  +W +S  G  T   
Sbjct: 125 ITFTSNYINGVLGIPNQ-DDEFVELITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNR 184

Query: 69  NCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSK 128
           + L P A +W +F+  +L+ +TH KT+SR+R +  Y ++ G  +++G +I  QIR    K
Sbjct: 185 HELQPAAKVWYHFLASRLLLSTHGKTISRNRAILLYAVLVGKPINVGRLIIDQIRACAEK 244

Query: 129 SRGQLFFPWLIMSLYVNAAI 149
            +G L+FP LI  L + + +
Sbjct: 245 GKGGLYFPSLISELCIQSHV 263

[Close]

BLAST of Cla007416 vs. NCBI nr
Match: gi|703121924|ref|XP_010102456.1| (hypothetical protein L484_006967 [Morus notabilis])

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 1


Query: 16  INAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPANCLLPEA 75
           IN+++ L  D++   N   +  + D + + I  +     +W  +  G  T P  CL P  
Sbjct: 99  INSLYDL-PDVEDHFNSFADSLNEDQLDEVINELCVEGTEWWRATRGSMTFPKECLQPGP 158

Query: 76  NIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQIRGVFSKSRGQLFF 135
            IW +F++ +L+P++H + V ++R +  Y +M+G  L++G +I  Q+     +  G L+F
Sbjct: 159 KIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWF 218

Query: 136 PWLIMSLYVNAAIGSSIE 154
           P LI  L +  A G SIE
Sbjct: 219 PSLITQLCI--AHGVSIE 233

[Close]

BLAST of Cla007416 vs. NCBI nr
Match: gi|703109223|ref|XP_010099236.1| (hypothetical protein L484_000483 [Morus notabilis])

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 31/114 (27.19%), Postives = 63/114 (55.26%), Query Frame = 1


Query: 9   VPFNAREINAVFKLRDDLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSPTGIRTLPA 68
           +PF +  IN+++ L  D++   N   +  + D + + I  +     +W  +  G  T P 
Sbjct: 115 IPFTSEAINSLYDL-PDVEDHFNNFADSLNEDQLDEVINELCVEGTEWRRATRGSMTFPR 174

Query: 69  NCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHIIAAQI 123
            CL P + IW +F++ +L+P++H + V ++R +  Y +M+G  L++G +I  Q+
Sbjct: 175 ECLQPGSKIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPLNVGRMIRQQL 227

[Close]

BLAST of Cla007416 vs. NCBI nr
Match: gi|590666924|ref|XP_007037100.1| (Uncharacterized protein TCM_013502 [Theobroma cacao])

HSP 1 Score: 60.5 bits (145), Expect = 4.9e-06
Identity = 39/117 (33.33%), Postives = 58/117 (49.57%), Query Frame = 1


Query: 3   VFDRCK-VPFNAREINAVFKLRD-DLDAEGNKLIEDASHDHMQDAIQVMAKLRLKWDVSP 62
           VF R K VPF++  IN  ++  D   +  G  L E   H+   D I ++ +   +     
Sbjct: 37  VFGRSKLVPFSSHAINEFYETTDIKSNGYGQYLGE---HEDWDDIIHILYEESAQCRFFN 96

Query: 63  TGIRTLPANCLLPEANIWVYFVKKQLIPTTHDKTVSRDRVMAAYYIMQGICLDIGHI 118
               +   N + P   IW+YFV  +L+PTTH   V +DR +  + IM G  +DIGHI
Sbjct: 97  NTPVSFKKNVMKPTYKIWLYFVASKLLPTTHTSNVMKDRAIPIHSIMIGCTIDIGHI 150

The following BLAST results are available for this feature:

BLAST of Cla007416 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QTD9_9ROSA	1.0e-13	33.11	Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1	[more]
W9RBS1_9ROSA	5.0e-13	31.43	Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1	[more]
W9S7D3_9ROSA	8.7e-10	29.71	Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1	[more]
W9RK06_9ROSA	1.6e-08	27.19	Uncharacterized protein OS=Morus notabilis GN=L484_000483 PE=4 SV=1	[more]
W9RPD1_9ROSA	3.4e-06	27.78	Uncharacterized protein OS=Morus notabilis GN=L484_026905 PE=4 SV=1	[more]

BLAST of Cla007416 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703087370\|ref\|XP_010093253.1\|	1.4e-13	33.11	hypothetical protein L484_022412 [Morus notabilis]	[more]
gi\|703082781\|ref\|XP_010092041.1\|	7.1e-13	31.43	hypothetical protein L484_000844 [Morus notabilis]	[more]
gi\|703121924\|ref\|XP_010102456.1\|	1.3e-09	29.71	hypothetical protein L484_006967 [Morus notabilis]	[more]
gi\|703109223\|ref\|XP_010099236.1\|	2.4e-08	27.19	hypothetical protein L484_000483 [Morus notabilis]	[more]
gi\|590666924\|ref\|XP_007037100.1\|	4.9e-06	33.33	Uncharacterized protein TCM_013502 [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007416	Cla007416.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007416	Cucumber (Chinese Long) v3	cucwmB258
Cla007416	Watermelon (97103) v2	wmwmbB207
Cla007416	Cucurbita maxima (Rimu)	cmawmB029
Cla007416	Cucurbita maxima (Rimu)	cmawmB444
Cla007416	Cucurbita moschata (Rifu)	cmowmB021
Cla007416	Cucurbita moschata (Rifu)	cmowmB437
Cla007416	Melon (DHL92) v3.5.1	mewmB369
Cla007416	Watermelon (Charleston Gray)	wcgwmB285
Cla007416	Cucumber (Chinese Long) v2	cuwmB250
Cla007416	Cucurbita pepo (Zucchini)	cpewmB563
Cla007416	Cucurbita pepo (Zucchini)	cpewmB768
Cla007416	Bottle gourd (USVL1VR-Ls)	lsiwmB319
Cla007416	Cucumber (Gy14) v2	cgybwmB235
Cla007416	Silver-seed gourd	carwmB0103