Cla007312 (gene) Watermelon (97103) v1

Overview
NameCla007312
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRetrotransposon protein (AHRD V1 **-- E5GBB2_CUCME)
LocationChr7 : 6848751 .. 6849279 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCAGCAGAGGATACCGGGGTATTTCATAGAGGTAAGCCCACATCTGGAGTCAAGGGTCAGGATCCTGAAGAGACAGTACCGTGCGATCGCTGAAATGTTGGGGTCAGAGTGTATTGGGTTTGGTTGGAATGCGAAGCGCAAATGTATTGACTGTAAGGTGGAGATATTTGATGCGTGGGTCAAGGTAATTTCATTACTTGTTTTATTTATTTCTTCTTCTTTTAAATTTGTCTTCGCCATAACATAACACATTTCACCTTTAACAGAGCCATCCAAGTGCAAAAGGACTGCGCCATAAGTCATTTTCGTACTACGACGACTTGGCCATCGTATTCGGCAAAGACAGAGCCATAGGGAGTCATGCAACCACCACTGCAGAGGTTGGATCTGAACTTGTTATGGAAGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCCAGCTCGCCCACGTTAGACGACATTCCAACTACCCCCCAGCGGTAG

mRNA sequence

ATGATGCAGCAGAGGATACCGGGGTATTTCATAGAGGTAAGCCCACATCTGGAGTCAAGGGTCAGGATCCTGAAGAGACAGTACCGTGCGATCGCTGAAATGTTGGGGTCAGAGTGTATTGGGTTTGGTTGGAATGCGAAGCGCAAATGTATTGACTGTAAGGTGGAGATATTTGATGCGTGGGTCAAGAGCCATCCAAGTGCAAAAGGACTGCGCCATAAGTCATTTTCGTACTACGACGACTTGGCCATCGTATTCGGCAAAGACAGAGCCATAGGGAGTCATGCAACCACCACTGCAGAGGTTGGATCTGAACTTGTTATGGAAGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCCAGCTCGCCCACGTTAGACGACATTCCAACTACCCCCCAGCGGTAG

Coding sequence (CDS)

ATGATGCAGCAGAGGATACCGGGGTATTTCATAGAGGTAAGCCCACATCTGGAGTCAAGGGTCAGGATCCTGAAGAGACAGTACCGTGCGATCGCTGAAATGTTGGGGTCAGAGTGTATTGGGTTTGGTTGGAATGCGAAGCGCAAATGTATTGACTGTAAGGTGGAGATATTTGATGCGTGGGTCAAGAGCCATCCAAGTGCAAAAGGACTGCGCCATAAGTCATTTTCGTACTACGACGACTTGGCCATCGTATTCGGCAAAGACAGAGCCATAGGGAGTCATGCAACCACCACTGCAGAGGTTGGATCTGAACTTGTTATGGAAGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCCAGCTCGCCCACGTTAGACGACATTCCAACTACCCCCCAGCGGTAG

Protein sequence

MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAWVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQSPDFENFYIPDPPFASSPTLDDIPTTPQR
Homology
[Close]
BLAST of Cla007312 vs. TrEMBL
Match: A0A162AHN3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_009785 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-25
Identity = 57/112 (50.89%), Postives = 79/112 (70.54%), Query Frame = 1 

Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           +M + +PG  ++  PH+ESRVR+L++Q+ AI EM G  C GFGWN   K I C+  IF+ 
Sbjct: 62  IMGELLPGCGMKARPHIESRVRLLRKQFFAIEEMRGPNCSGFGWNELEKSITCEKSIFEE 121

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEEN 113
           W+KSHP+AKGLR+KSF +YD+LA VFGKDRA G    + A+   E+  +EE+
Sbjct: 122 WLKSHPNAKGLRNKSFPFYDELAQVFGKDRANGEGVESPADAVEEIANDEES 173

[Close]
BLAST of Cla007312 vs. TrEMBL
Match: A0A161XV48_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-25
Identity = 59/112 (52.68%), Postives = 77/112 (68.75%), Query Frame = 1 

Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           +M+   PG  ++  PH+ESRVR+ ++QY AI EM G  C GFGWN   K I C+  IF+ 
Sbjct: 60  IMEDIQPGCGMKARPHIESRVRLWRKQYFAIEEMRGPNCSGFGWNELDKSITCEKSIFED 119

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEEN 113
           W+KSHP+AKGLR+KSF YYD+L+ VFGKDRA G    + A+   E+  EEEN
Sbjct: 120 WLKSHPNAKGLRNKSFPYYDELSQVFGKDRANGECVESPADAVEEIANEEEN 171

[Close]
BLAST of Cla007312 vs. TrEMBL
Match: A0A161WV79_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011368 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-23
Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = 1 

Query: 11  IEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAWVKSHPSAKG 70
           ++  P +ESRVR+ ++QY AI EM G  C GFGWN   K I C   IF+ W+KSHP+AKG
Sbjct: 1   MKARPRIESRVRLWRKQYFAIEEMRGPNCSGFGWNELDKSITCDKSIFEDWLKSHPNAKG 60

Query: 71  LRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEEN 113
           LR+KSF YYD+L+ VFGKDRA G    + A+   E+  EEEN
Sbjct: 61  LRNKSFPYYDELSQVFGKDRANGECVESPADAAEEIANEEEN 102

[Close]
BLAST of Cla007312 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.7e-22
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 1 

Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           MM +++ G  +  +  ++ R++ LKR ++AIAEMLG  C GFGWN + KCI  + E+FD 
Sbjct: 368 MMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDN 427

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGS 105
           WV+S P+AKGL +  F YYD+L  VFG+DRA G  A T A+VGS
Sbjct: 428 WVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGS 471

[Close]
BLAST of Cla007312 vs. TrEMBL
Match: A0A0K9RVV5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_028730 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-22
Identity = 50/115 (43.48%), Postives = 78/115 (67.83%), Query Frame = 1 

Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           +M++++P    +  PH+ESRV++L++QY AI EML     GFGWN + K + C   ++D 
Sbjct: 63  LMKEKLPECDKKAKPHIESRVKLLRKQYDAIPEMLSPSASGFGWNDEGKFVTCPQSVWDE 122

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDI 116
           W+KSH +A GLR+K F ++DDL  +FGKDR +G+ AT   +V  E  M+EE +++
Sbjct: 123 WIKSHKNAAGLRNKPFPFFDDLGKIFGKDRDVGNEATNVYDVLEE--MDEEEQEV 175

[Close]
BLAST of Cla007312 vs. NCBI nr
Match: gi|659111294|ref|XP_008455678.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 2.7e-28
Identity = 64/145 (44.14%), Postives = 97/145 (66.90%), Query Frame = 1 

Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           +M+++IP   I+V+ +LESRV+ LK+QY AIA+M+G  C  FGWN +RKCI+ +  +FD 
Sbjct: 84  LMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDD 143

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQS 120
           WVK HP+A+GL +K F+Y+ DL IVFG+D+A G       E+ S+   + E +D+  N  
Sbjct: 144 WVKGHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDIN-- 203

Query: 121 PDFENFYIPDPPFASSPTLDDIPTT 146
              E+F IP+P     P+ +D+P+T
Sbjct: 204 --LEDFDIPNPHGLEPPSGEDMPST 224

[Close]
BLAST of Cla007312 vs. NCBI nr
Match: gi|672109629|ref|XP_008791120.1| (PREDICTED: uncharacterized protein LOC103708116 [Phoenix dactylifera])

HSP 1 Score: 129.8 bits (325), Expect = 3.9e-27
Identity = 56/111 (50.45%), Postives = 81/111 (72.97%), Query Frame = 1 

Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           MM++++PG  +  +PH+E+ V++LK+QY AIAE+LG  C+GFGWN + KC+    +++D 
Sbjct: 281 MMEKKLPGCGLRGNPHIENYVKLLKKQYNAIAEILGPNCLGFGWNDREKCVVADKDVYDL 340

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEE 112
           WVKSHP A GLR+K F YY+DL+I+FGKDRA G  A   A+   ++  EEE
Sbjct: 341 WVKSHPHATGLRNKPFPYYEDLSIMFGKDRANGEGAEDPADACEQIEKEEE 391

[Close]
BLAST of Cla007312 vs. NCBI nr
Match: gi|720026936|ref|XP_010264414.1| (PREDICTED: uncharacterized protein LOC104602427 [Nelumbo nucifera])

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 57/119 (47.90%), Postives = 79/119 (66.39%), Query Frame = 1 

Query: 2   MQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAW 61
           M+  +PG  ++ +PH+ESRV+ +KRQY AI EML   C GFGW+  +KCI CK E+F+ W
Sbjct: 58  METNLPGCGLKANPHIESRVKHMKRQYAAICEMLSPSCSGFGWDDVKKCITCKDEVFNGW 117

Query: 62  VKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQS 121
           VKSHP AKGLR+K F ++D L+I+FG+DRA G      A+    +  EE N   +  +S
Sbjct: 118 VKSHPHAKGLRNKPFPFFDGLSIIFGRDRATGESVEAPADAAENVEREEYNNPPIVGES 176

[Close]
BLAST of Cla007312 vs. NCBI nr
Match: gi|672198585|ref|XP_008777372.1| (PREDICTED: uncharacterized protein LOC103697309 [Phoenix dactylifera])

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-26
Identity = 63/143 (44.06%), Postives = 87/143 (60.84%), Query Frame = 1 

Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           MM++++PG  +  + H+E+ V++LK+QY AIAEM G  C GFGWN + KC+    +++D 
Sbjct: 65  MMEKKLPGCGLRGNSHIENHVKLLKKQYNAIAEMFGPNCSGFGWNDREKCVVADKDVYDL 124

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEE--NEDILNN 120
           WVKSHP A GLR+K F YY+DL+IVFGKDRA G      A+   ++  EEE   + +   
Sbjct: 125 WVKSHPHAAGLRNKPFPYYEDLSIVFGKDRANGEGVEDPADACEQIEKEEEALGDTMSLG 184

Query: 121 QSPDFEN---FYIPDPPFASSPT 139
              D E      I  PPF   PT
Sbjct: 185 DDMDAEGGSPNAIDAPPFICQPT 207

[Close]
BLAST of Cla007312 vs. NCBI nr
Match: gi|659111565|ref|XP_008455793.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-26
Identity = 57/105 (54.29%), Postives = 76/105 (72.38%), Query Frame = 1 

Query: 2   MQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAW 61
           M +++PG  I+ SP ++ RV+ LK+ Y AIAEM G  C GFGWN + +CI  + ++FD+W
Sbjct: 1   MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSW 60

Query: 62  VKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSEL 107
           VKSHP+ KGL HKSF YYDDL  VFGKDRA G+ + T  +VGS +
Sbjct: 61  VKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNV 105

The following BLAST results are available for this feature:
BLAST of Cla007312 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A162AHN3_DAUCA1.2e-2550.89Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_009785 PE=4 SV=1[more]
A0A161XV48_DAUCA1.5e-2552.68Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1[more]
A0A161WV79_DAUCA1.4e-2353.92Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011368 PE=4 SV=1[more]
E5GBB2_CUCME2.7e-2250.00Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0K9RVV5_SPIOL3.5e-2243.48Uncharacterized protein OS=Spinacia oleracea GN=SOVF_028730 PE=4 SV=1[more]
BLAST of Cla007312 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111294|ref|XP_008455678.1|2.7e-2844.14PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|672109629|ref|XP_008791120.1|3.9e-2750.45PREDICTED: uncharacterized protein LOC103708116 [Phoenix dactylifera][more]
gi|720026936|ref|XP_010264414.1|1.1e-2647.90PREDICTED: uncharacterized protein LOC104602427 [Nelumbo nucifera][more]
gi|672198585|ref|XP_008777372.1|3.3e-2644.06PREDICTED: uncharacterized protein LOC103697309 [Phoenix dactylifera][more]
gi|659111565|ref|XP_008455793.1|3.3e-2654.29PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007312Cla007312.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 11..118
score: 2.7
NoneNo IPR availablePANTHERPTHR31704:SF16SUBFAMILY NOT NAMEDcoord: 11..118
score: 2.7