Cla007248 (gene) Watermelon (97103) v1

Overview
NameCla007248
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 5565746 .. 5566234 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACCAGATTTCAAGAAGAAAAAAGGAAACAAACCGTGGGTTGATATAGCTAAGAATAGACCCTTCTACCCTGCTTTTCCTCTATACCATTTATCTTCAATGAAGAAAGTATCAGTGTCTAATGTTTTGGCTCAGGCAGCCCCCACTTCGGAGTTCCACTACTCGTTATTTGAGAGGGAGATGAAGAATATTATCACTTTTCTTTCTTTGTTGGGGTATTTCAGTGCTCTCCTGGGTGAAGGGACTTTCGCTTATGGTGCCCTAATCCCCCAGAGCTTCCTTTGTTTGGTCAACCTTTCTTCCCTGATGAATTCAATTTTTGCCTCAATGTGGAGGATGAGAATTCTCAAGAAGGTTAAGTTTTTTGTTTGGCAAGTTCTTCATGAAAGGGTTAATGCCTTGGACAGGGTGCCAAGAAAGGTGCCGAATTTGATGAGGTGGTGTGTTGCATTCTTCGCAGAAGGGTTGCAGATGGGATGCAGATGA

mRNA sequence

ATGACACCAGATTTCAAGAAGAAAAAAGGAAACAAACCGTGGGTTGATATAGCTAAGAATAGACCCTTCTACCCTGCTTTTCCTCTATACCATTTATCTTCAATGAAGAAAGTATCAGTGTCTAATGTTTTGGCTCAGGCAGCCCCCACTTCGGAGTTCCACTACTCGTTATTTGAGAGGGAGATGAAGAATATTATCACTTTTCTTTCTTTGTTGGGGTATTTCAGTGCTCTCCTGGGTGAAGGGACTTTCGCTTATGGTGCCCTAATCCCCCAGAGCTTCCTTTGTTTGGTCAACCTTTCTTCCCTGATGAATTCAATTTTTGCCTCAATGTGGAGGATGAGAATTCTCAAGAAGGTTAAGTTTTTTGTTTGGCAAGTTCTTCATGAAAGGGTTAATGCCTTGGACAGGGTGCCAAGAAAGGTGCCGAATTTGATGAGGTGGTGTGTTGCATTCTTCGCAGAAGGGTTGCAGATGGGATGCAGATGA

Coding sequence (CDS)

ATGACACCAGATTTCAAGAAGAAAAAAGGAAACAAACCGTGGGTTGATATAGCTAAGAATAGACCCTTCTACCCTGCTTTTCCTCTATACCATTTATCTTCAATGAAGAAAGTATCAGTGTCTAATGTTTTGGCTCAGGCAGCCCCCACTTCGGAGTTCCACTACTCGTTATTTGAGAGGGAGATGAAGAATATTATCACTTTTCTTTCTTTGTTGGGGTATTTCAGTGCTCTCCTGGGTGAAGGGACTTTCGCTTATGGTGCCCTAATCCCCCAGAGCTTCCTTTGTTTGGTCAACCTTTCTTCCCTGATGAATTCAATTTTTGCCTCAATGTGGAGGATGAGAATTCTCAAGAAGGTTAAGTTTTTTGTTTGGCAAGTTCTTCATGAAAGGGTTAATGCCTTGGACAGGGTGCCAAGAAAGGTGCCGAATTTGATGAGGTGGTGTGTTGCATTCTTCGCAGAAGGGTTGCAGATGGGATGCAGATGA

Protein sequence

MTPDFKKKKGNKPWVDIAKNRPFYPAFPLYHLSSMKKVSVSNVLAQAAPTSEFHYSLFEREMKNIITFLSLLGYFSALLGEGTFAYGALIPQSFLCLVNLSSLMNSIFASMWRMRILKKVKFFVWQVLHERVNALDRVPRKVPNLMRWCVAFFAEGLQMGCR
Homology
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BLAST of Cla007248 vs. NCBI nr
Match: gi|778701385|ref|XP_011655012.1| (PREDICTED: uncharacterized protein LOC105435468 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18
Identity = 68/140 (48.57%), Postives = 79/140 (56.43%), Query Frame = 1 

Query: 1   MTPDFKKKKGNKPWVDIAKN----------------RPFYPAFPLYHLSSMKKVSVSNVL 60
           MTP+FKKKKGNKP VDIAKN                R FY AFPLY+LSSM+KVS+SNVL
Sbjct: 18  MTPEFKKKKGNKPSVDIAKNFSLFARCFREDRWLEERSFYSAFPLYYLSSMQKVSLSNVL 77

Query: 61  AQAAPTSEFHYSLFEREMKNIITFLSLLGYFSALLGEGTFAYGALIPQSFLCLVNLSSLM 120
           AQ  PT      L+ +  + I++   L    S L     F      P SF+    L  + 
Sbjct: 78  AQPVPTWS-SAILYLQGRRRILSLSFLCCGVSGLSWVRNFLLWCPSPSSFVWSTFLPPI- 137

Query: 121 NSIFASMWRMRILKKVKFFV 125
           NSIF SMWRM ILKKVKF V
Sbjct: 138 NSIFVSMWRMGILKKVKFLV 155

The following BLAST results are available for this feature:
BLAST of Cla007248 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778701385|ref|XP_011655012.1|1.3e-1848.57PREDICTED: uncharacterized protein LOC105435468 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007248Cla007248.1mRNA