Cla007193 (gene) Watermelon (97103) v1

Overview
NameCla007193
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRibosome inactivating protein (Fragment) (AHRD V1 **-- D9J2T9_MOMBA); contains Interpro domain(s) IPR001574 Ribosome-inactivating protein
LocationChr8 : 7437773 .. 7438402 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGATTCAATCCTTTCCCTTAAATTACAGTGCTCGTGCTGCCAACCATGCCGATCGTCGACCTGCCGATTCGAATCTCAGCTTCTCTCTGGTTGGTGCCACTGCTTCTACTTACAAACAATTCATATCAGATCTACGTAAGGCACTTACACTAAACTCCCACACAGTCTACAACATACCTGTCTTAGCATCCACAGCCAAAGGGCTCAACCGCTTCATATTGCTCAATCTCACCAATTACCAAGCCGAATCCATCACTCTCGCAATTGACGTAGTTGATGTTTACGTAGTTGCATACCAAGCCCAAAACAAAGCCTATTTCCTCAAGAACGTTTCCAAGGAAGCACATGATGTGTTATTTAAAGGTATGAAACATGAAACACTTCCTTACAAAGGGAATTACGGTGACCTGGAGAGATTTGCTGGAAAGATTTCGAGAGAGAATATTGATCTTGGATTATCTGAACTAGGGAGGGCAATTGGAAATCTGTTCCATTATAAGGCTGGGAATTCTGTGCCAAGAGCATTCATTGTGATCATTCAACGATTTCAGAAGCTCCAAGATTTAAGTATATTGAGTCACAGTATGTTAGGTCTAAGTTTAAACCTGACCCTGGATTCATAA

mRNA sequence

ATGGAGTTGATTCAATCCTTTCCCTTAAATTACAGTGCTCGTGCTGCCAACCATGCCGATCGTCGACCTGCCGATTCGAATCTCAGCTTCTCTCTGGTTGGTGCCACTGCTTCTACTTACAAACAATTCATATCAGATCTACGTAAGGCACTTACACTAAACTCCCACACAGTCTACAACATACCTGTCTTAGCATCCACAGCCAAAGGGCTCAACCGCTTCATATTGCTCAATCTCACCAATTACCAAGCCGAATCCATCACTCTCGCAATTGACGTAGTTGATGTTTACGTAGTTGCATACCAAGCCCAAAACAAAGCCTATTTCCTCAAGAACGTTTCCAAGGAAGCACATGATGTGTTATTTAAAGGTATGAAACATGAAACACTTCCTTACAAAGGGAATTACGGTGACCTGGAGAGATTTGCTGGAAAGATTTCGAGAGAGAATATTGATCTTGGATTATCTGAACTAGGGAGGGCAATTGGAAATCTGTTCCATTATAAGGCTGGGAATTCTGTGCCAAGAGCATTCATTGTGATCATTCAACGATTTCAGAAGCTCCAAGATTTAAGTATATTGAGTCACAGTATGTTAGGTCTAAGTTTAAACCTGACCCTGGATTCATAA

Coding sequence (CDS)

ATGGAGTTGATTCAATCCTTTCCCTTAAATTACAGTGCTCGTGCTGCCAACCATGCCGATCGTCGACCTGCCGATTCGAATCTCAGCTTCTCTCTGGTTGGTGCCACTGCTTCTACTTACAAACAATTCATATCAGATCTACGTAAGGCACTTACACTAAACTCCCACACAGTCTACAACATACCTGTCTTAGCATCCACAGCCAAAGGGCTCAACCGCTTCATATTGCTCAATCTCACCAATTACCAAGCCGAATCCATCACTCTCGCAATTGACGTAGTTGATGTTTACGTAGTTGCATACCAAGCCCAAAACAAAGCCTATTTCCTCAAGAACGTTTCCAAGGAAGCACATGATGTGTTATTTAAAGGTATGAAACATGAAACACTTCCTTACAAAGGGAATTACGGTGACCTGGAGAGATTTGCTGGAAAGATTTCGAGAGAGAATATTGATCTTGGATTATCTGAACTAGGGAGGGCAATTGGAAATCTGTTCCATTATAAGGCTGGGAATTCTGTGCCAAGAGCATTCATTGTGATCATTCAACGATTTCAGAAGCTCCAAGATTTAAGTATATTGAGTCACAGTATGTTAGGTCTAAGTTTAAACCTGACCCTGGATTCATAA

Protein sequence

MELIQSFPLNYSARAANHADRRPADSNLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQAESITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFAGKISRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQRFQKLQDLSILSHSMLGLSLNLTLDS
Homology
[Close]
BLAST of Cla007193 vs. Swiss-Prot
Match: RIP2_BRYDI (Ribosome-inactivating protein bryodin II OS=Bryonia dioica PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.7e-47
Identity = 96/159 (60.38%), Postives = 119/159 (74.84%), Query Frame = 1 

Query: 25  DSNLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQA 84
           D +++FSL+GAT +TYK FI +LR  LT+ +  VY+IPVL + A GL RF L+ LTNY  
Sbjct: 21  DVDINFSLIGATGATYKTFIRNLRTKLTVGTPRVYDIPVLRNAAAGLARFQLVTLTNYNG 80

Query: 85  ESITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFAG 144
           ES+T+A+DVV+VYVVAY+A N AYFL + S EA++VLF G+ H  LPY GNY  LE  AG
Sbjct: 81  ESVTVALDVVNVYVVAYRAGNTAYFLADASTEANNVLFAGINHVRLPYGGNYDGLETAAG 140

Query: 145 KISRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
           +ISRENI+LG SE+  AIGN+F +  G SVPRAFIVIIQ
Sbjct: 141 RISRENIELGFSEISSAIGNMFRHNPGTSVPRAFIVIIQ 179

[Close]
BLAST of Cla007193 vs. Swiss-Prot
Match: RIP3_MOMCH (Ribosome-inactivating protein beta-momorcharin OS=Momordica charantia GN=MAP30 PE=1 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 7.2e-35
Identity = 84/160 (52.50%), Postives = 106/160 (66.25%), Query Frame = 1 

Query: 24  ADSNLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQ 83
           A  +++F L  ATA TY +FI D R  L   SH VY+IP+L ST     RFILLNLT+Y 
Sbjct: 21  AKGDVNFDLSTATAKTYTKFIEDFRATLPF-SHKVYDIPLLYSTISDSRRFILLNLTSYA 80

Query: 84  AESITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFA 143
            E+I++AIDV +VYVVAY+ ++ +YF K    EA+++LFKG +  TLPY GNY +L+  A
Sbjct: 81  YETISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKGTRKITLPYTGNYENLQTAA 140

Query: 144 GKISRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
            KI RENIDLGL  L  AI  LF+Y A  S P A +V+IQ
Sbjct: 141 HKI-RENIDLGLPALSSAITTLFYYNA-QSAPSALLVLIQ 177

[Close]
BLAST of Cla007193 vs. Swiss-Prot
Match: RIP2_MOMBA (Ribosome-inactivating protein momordin II OS=Momordica balsamina PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.8e-34
Identity = 83/160 (51.88%), Postives = 106/160 (66.25%), Query Frame = 1 

Query: 24  ADSNLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQ 83
           A  +++F L  ATA TY +FI D R  L   SH VY+IP+L ST     RFILL+LT+Y 
Sbjct: 21  AKGDVNFDLSTATAKTYTKFIEDFRATLPF-SHKVYDIPLLYSTISDSRRFILLDLTSYA 80

Query: 84  AESITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFA 143
            E+I++AIDV +VYVVAY+ ++ +YF K    EA+++LFKG +  TLPY GNY +L+  A
Sbjct: 81  YETISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKGTRKITLPYTGNYENLQTAA 140

Query: 144 GKISRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
            KI RENIDLGL  L  AI  LF+Y A  S P A +V+IQ
Sbjct: 141 HKI-RENIDLGLPALSSAITTLFYYNA-QSAPSALLVLIQ 177

[Close]
BLAST of Cla007193 vs. Swiss-Prot
Match: RIP_CUCMO (Ribosome-inactivating protein cucurmosin OS=Cucurbita moschata PE=1 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 7.5e-32
Identity = 78/157 (49.68%), Postives = 101/157 (64.33%), Query Frame = 1 

Query: 27  NLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQAES 86
           N+ F L  AT+S+YK FI +LR+AL  +   VY+IPVL ST     RFIL++L NY  +S
Sbjct: 1   NVRFDLSSATSSSYKTFIKNLREALPKDGK-VYDIPVLLSTVMDSRRFILIDLVNYDGQS 60

Query: 87  ITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFAGKI 146
           IT AIDV++VY+VAY     +YF + V  +A  +LFKG +  TLPY GNY +L+  A K+
Sbjct: 61  ITAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKL 120

Query: 147 SRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
            RENI+LGL  L  AI  LFHY A  +   A +V+IQ
Sbjct: 121 -RENIELGLPALDSAITTLFHYNA-EAAASALLVLIQ 154

[Close]
BLAST of Cla007193 vs. Swiss-Prot
Match: RIPT_TRIKI (Ribosome-inactivating protein alpha-trichosanthin OS=Trichosanthes kirilowii PE=1 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-29
Identity = 79/161 (49.07%), Postives = 105/161 (65.22%), Query Frame = 1 

Query: 25  DSNLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQA 84
           + ++SF L GAT+S+Y  FIS+LRKAL  N   +Y+IP+L S+  G  R+ L++LTNY  
Sbjct: 22  EGDVSFRLSGATSSSYGVFISNLRKALP-NERKLYDIPLLRSSLPGSQRYALIHLTNYAD 81

Query: 85  ESITLAIDVVDVYVVAYQAQNKAYFLKNVS-KEAHDVLFK-GMKHETLPYKGNYGDLERF 144
           E+I++AIDV +VY++ Y+A + +YF    S  EA   +FK  M+  TLPY GNY  L+  
Sbjct: 82  ETISVAIDVTNVYIMGYRAGDTSYFFNEASATEAAKYVFKDAMRKVTLPYSGNYERLQTA 141

Query: 145 AGKISRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
           AGKI RENI LGL  L  AI  LF+Y A NS   A +V+IQ
Sbjct: 142 AGKI-RENIPLGLPALDSAITTLFYYNA-NSAASALMVLIQ 179

[Close]
BLAST of Cla007193 vs. TrEMBL
Match: B1B626_TRIKI (rRNA N-glycosidase OS=Trichosanthes kirilowii var. japonica PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.1e-49
Identity = 101/159 (63.52%), Postives = 128/159 (80.50%), Query Frame = 1 

Query: 25  DSNLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQA 84
           +++++FSL+G+T++TYKQFI +LR ALT+ S TV NIPVL  TA GL RF+L++LTNY  
Sbjct: 20  EADVNFSLLGSTSATYKQFIQNLRAALTVGSPTVENIPVLKGTAAGLARFLLVHLTNYNG 79

Query: 85  ESITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFAG 144
           ESIT+A+DVV+VYVVAY+A N AYFL + S EA++VLFKG+ H  LPY GNY  LE  AG
Sbjct: 80  ESITVAVDVVNVYVVAYRAGNNAYFLNDASAEANNVLFKGINHVRLPYGGNYDGLETAAG 139

Query: 145 KISRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
           +ISRE I LG SE+  AIG++FHY AG SVP+AFIVIIQ
Sbjct: 140 RISREKIYLGFSEISSAIGSMFHYNAGTSVPKAFIVIIQ 178

[Close]
BLAST of Cla007193 vs. TrEMBL
Match: S6CNA0_MOMCH (Ribosome inactivating protein (Fragment) OS=Momordica charantia GN=rip PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-33
Identity = 85/160 (53.12%), Postives = 109/160 (68.12%), Query Frame = 1 

Query: 24  ADSNLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQ 83
           A  +++F L  ATA TY +FI D R  L   SH VY+IP+L ST  G  RFILLNLT+Y 
Sbjct: 15  AKGDVNFDLSTATAKTYTKFIEDFRATLPF-SHKVYDIPLLYSTISGSRRFILLNLTSYA 74

Query: 84  AESITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFA 143
            E+I++AIDV +VYVVAY+ ++ +YF K    EA+++LFKG +  TLPY GNY +L+  A
Sbjct: 75  YETISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKGTRKITLPYTGNYENLQTAA 134

Query: 144 GKISRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
            KI RENIDLGL  L  AI  LF+Y A  S P A +V+IQ
Sbjct: 135 HKI-RENIDLGLPALSSAITTLFYYNA-QSAPSALLVLIQ 171

[Close]
BLAST of Cla007193 vs. TrEMBL
Match: S6CNB7_MOMCH (rRNA N-glycosidase OS=Momordica charantia GN=rip PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.8e-33
Identity = 84/157 (53.50%), Postives = 108/157 (68.79%), Query Frame = 1 

Query: 27  NLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQAES 86
           +++F L  ATA TY +FI D R  L   SH VY+IP+L ST     RFILLNLT+Y  E+
Sbjct: 2   DVNFDLSTATAKTYTKFIEDFRATLPF-SHKVYDIPLLYSTISDSRRFILLNLTSYAYET 61

Query: 87  ITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFAGKI 146
           I++AIDV +VYVVAY+ ++ +YF K    EA+++LFKG +  TLPY GNYG+L+  A KI
Sbjct: 62  ISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKGTRKITLPYTGNYGNLQTAAHKI 121

Query: 147 SRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
            RENIDLGL  L  AI  LF+Y A  S P A +V+IQ
Sbjct: 122 -RENIDLGLPVLSSAITTLFYYNA-QSAPSALLVLIQ 155

[Close]
BLAST of Cla007193 vs. TrEMBL
Match: S6CNI4_MOMCH (rRNA N-glycosidase OS=Momordica charantia GN=rip PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.2e-33
Identity = 84/157 (53.50%), Postives = 108/157 (68.79%), Query Frame = 1 

Query: 27  NLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQAES 86
           +++F L  ATA TY +FI D R  L L SH VY+IP+L ST     RFILLNLT+Y  E+
Sbjct: 2   DVNFDLSTATAKTYTKFIEDFRATLPL-SHKVYDIPLLYSTISDSRRFILLNLTSYAYET 61

Query: 87  ITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFAGKI 146
           I++AIDV +VYVVAY+ ++ +YF K    EA+++LFKG +  TLPY GNY +L+  A KI
Sbjct: 62  ISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKGTRKITLPYTGNYENLQTAAHKI 121

Query: 147 SRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
            RENIDLGL  L  AI  LF+Y A  S P A +V+IQ
Sbjct: 122 -RENIDLGLPALSSAITTLFYYNA-QSAPSALLVLIQ 155

[Close]
BLAST of Cla007193 vs. TrEMBL
Match: S6CMM2_MOMCH (Ribosome inactivating protein (Fragment) OS=Momordica charantia GN=rip PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.1e-33
Identity = 84/160 (52.50%), Postives = 108/160 (67.50%), Query Frame = 1 

Query: 24  ADSNLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQ 83
           A  +++F L  ATA TY +FI D R  L   SH VY+IP+L ST     RFILLNLT+Y 
Sbjct: 15  AKGDVNFDLSTATAKTYTKFIEDFRATLPF-SHKVYDIPLLYSTISDSRRFILLNLTSYA 74

Query: 84  AESITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFA 143
            E+I++AIDV +VYVVAY+ ++ +YF K    EA+++LFKG +  TLPY GNY +L+  A
Sbjct: 75  YETISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKGTRKITLPYTGNYENLQTAA 134

Query: 144 GKISRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
            KI RENIDLGL  L  AI  LF+Y A  S P A +V+IQ
Sbjct: 135 HKI-RENIDLGLPALSSAITTLFYYNA-QSAPSALLVLIQ 171

[Close]
BLAST of Cla007193 vs. NCBI nr
Match: gi|169635959|dbj|BAG12408.1| (karasurin-H precursor [Trichosanthes kirilowii var. japonica])

HSP 1 Score: 202.2 bits (513), Expect = 8.8e-49
Identity = 101/159 (63.52%), Postives = 128/159 (80.50%), Query Frame = 1 

Query: 25  DSNLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQA 84
           +++++FSL+G+T++TYKQFI +LR ALT+ S TV NIPVL  TA GL RF+L++LTNY  
Sbjct: 20  EADVNFSLLGSTSATYKQFIQNLRAALTVGSPTVENIPVLKGTAAGLARFLLVHLTNYNG 79

Query: 85  ESITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFAG 144
           ESIT+A+DVV+VYVVAY+A N AYFL + S EA++VLFKG+ H  LPY GNY  LE  AG
Sbjct: 80  ESITVAVDVVNVYVVAYRAGNNAYFLNDASAEANNVLFKGINHVRLPYGGNYDGLETAAG 139

Query: 145 KISRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
           +ISRE I LG SE+  AIG++FHY AG SVP+AFIVIIQ
Sbjct: 140 RISREKIYLGFSEISSAIGSMFHYNAGTSVPKAFIVIIQ 178

[Close]
BLAST of Cla007193 vs. NCBI nr
Match: gi|12643707|sp|P98184.1|RIP2_BRYDI (RecName: Full=Ribosome-inactivating protein bryodin II; AltName: Full=BD2; AltName: Full=rRNA N-glycosidase; Flags: Precursor [Bryonia dioica])

HSP 1 Score: 190.7 bits (483), Expect = 2.7e-45
Identity = 96/159 (60.38%), Postives = 121/159 (76.10%), Query Frame = 1 

Query: 25  DSNLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQA 84
           D +++FSL+GAT +TYK FI +LR  LT+ +  VY+IPVL + A GL RF L+ LTNY  
Sbjct: 21  DVDINFSLIGATGATYKTFIRNLRTKLTVGTPRVYDIPVLRNAAAGLARFQLVTLTNYNG 80

Query: 85  ESITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFAG 144
           ES+T+A+DVV+VYVVAY+A N AYFL + S EA++VLF G+ H  LPY GNY  LE  AG
Sbjct: 81  ESVTVALDVVNVYVVAYRAGNTAYFLADASTEANNVLFAGINHVRLPYGGNYDGLETAAG 140

Query: 145 KISRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
           +ISRENI+LG SE+  AIGN+F +  G SVPRAFIVIIQ
Sbjct: 141 RISRENIELGFSEISSAIGNMFRHNPGTSVPRAFIVIIQ 179

[Close]
BLAST of Cla007193 vs. NCBI nr
Match: gi|530776695|emb|CCD28533.1| (ribosome inactivating protein, partial [Momordica charantia])

HSP 1 Score: 151.4 bits (381), Expect = 1.8e-33
Identity = 85/160 (53.12%), Postives = 109/160 (68.12%), Query Frame = 1 

Query: 24  ADSNLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQ 83
           A  +++F L  ATA TY +FI D R  L   SH VY+IP+L ST  G  RFILLNLT+Y 
Sbjct: 15  AKGDVNFDLSTATAKTYTKFIEDFRATLPF-SHKVYDIPLLYSTISGSRRFILLNLTSYA 74

Query: 84  AESITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFA 143
            E+I++AIDV +VYVVAY+ ++ +YF K    EA+++LFKG +  TLPY GNY +L+  A
Sbjct: 75  YETISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKGTRKITLPYTGNYENLQTAA 134

Query: 144 GKISRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
            KI RENIDLGL  L  AI  LF+Y A  S P A +V+IQ
Sbjct: 135 HKI-RENIDLGLPALSSAITTLFYYNA-QSAPSALLVLIQ 171

[Close]
BLAST of Cla007193 vs. NCBI nr
Match: gi|530776783|emb|CCD30689.1| (ribosome inactivating protein [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 84/157 (53.50%), Postives = 108/157 (68.79%), Query Frame = 1 

Query: 27  NLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQAES 86
           +++F L  ATA TY +FI D R  L   SH VY+IP+L ST     RFILLNLT+Y  E+
Sbjct: 2   DVNFDLSTATAKTYTKFIEDFRATLPF-SHKVYDIPLLYSTISDSRRFILLNLTSYAYET 61

Query: 87  ITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFAGKI 146
           I++AIDV +VYVVAY+ ++ +YF K    EA+++LFKG +  TLPY GNYG+L+  A KI
Sbjct: 62  ISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKGTRKITLPYTGNYGNLQTAAHKI 121

Query: 147 SRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
            RENIDLGL  L  AI  LF+Y A  S P A +V+IQ
Sbjct: 122 -RENIDLGLPVLSSAITTLFYYNA-QSAPSALLVLIQ 155

[Close]
BLAST of Cla007193 vs. NCBI nr
Match: gi|530776777|emb|CCD30686.1| (ribosome inactivating protein [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 8.9e-33
Identity = 84/157 (53.50%), Postives = 108/157 (68.79%), Query Frame = 1 

Query: 27  NLSFSLVGATASTYKQFISDLRKALTLNSHTVYNIPVLASTAKGLNRFILLNLTNYQAES 86
           +++F L  ATA TY +FI D R  L L SH VY+IP+L ST     RFILLNLT+Y  E+
Sbjct: 2   DVNFDLSTATAKTYTKFIEDFRATLPL-SHKVYDIPLLYSTISDSRRFILLNLTSYAYET 61

Query: 87  ITLAIDVVDVYVVAYQAQNKAYFLKNVSKEAHDVLFKGMKHETLPYKGNYGDLERFAGKI 146
           I++AIDV +VYVVAY+ ++ +YF K    EA+++LFKG +  TLPY GNY +L+  A KI
Sbjct: 62  ISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKGTRKITLPYTGNYENLQTAAHKI 121

Query: 147 SRENIDLGLSELGRAIGNLFHYKAGNSVPRAFIVIIQ 184
            RENIDLGL  L  AI  LF+Y A  S P A +V+IQ
Sbjct: 122 -RENIDLGLPALSSAITTLFYYNA-QSAPSALLVLIQ 155

The following BLAST results are available for this feature:
BLAST of Cla007193 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RIP2_BRYDI1.7e-4760.38Ribosome-inactivating protein bryodin II OS=Bryonia dioica PE=1 SV=1[more]
RIP3_MOMCH7.2e-3552.50Ribosome-inactivating protein beta-momorcharin OS=Momordica charantia GN=MAP30 P... [more]
RIP2_MOMBA2.8e-3451.88Ribosome-inactivating protein momordin II OS=Momordica balsamina PE=3 SV=1[more]
RIP_CUCMO7.5e-3249.68Ribosome-inactivating protein cucurmosin OS=Cucurbita moschata PE=1 SV=2[more]
RIPT_TRIKI1.6e-2949.07Ribosome-inactivating protein alpha-trichosanthin OS=Trichosanthes kirilowii PE=... [more]
BLAST of Cla007193 vs. TrEMBL
Match NameE-valueIdentityDescription
B1B626_TRIKI6.1e-4963.52rRNA N-glycosidase OS=Trichosanthes kirilowii var. japonica PE=2 SV=1[more]
S6CNA0_MOMCH1.2e-3353.13Ribosome inactivating protein (Fragment) OS=Momordica charantia GN=rip PE=4 SV=1[more]
S6CNB7_MOMCH2.8e-3353.50rRNA N-glycosidase OS=Momordica charantia GN=rip PE=3 SV=1[more]
S6CNI4_MOMCH6.2e-3353.50rRNA N-glycosidase OS=Momordica charantia GN=rip PE=3 SV=1[more]
S6CMM2_MOMCH8.1e-3352.50Ribosome inactivating protein (Fragment) OS=Momordica charantia GN=rip PE=4 SV=1[more]
BLAST of Cla007193 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|169635959|dbj|BAG12408.1|8.8e-4963.52karasurin-H precursor [Trichosanthes kirilowii var. japonica][more]
gi|12643707|sp|P98184.1|RIP2_BRYDI2.7e-4560.38RecName: Full=Ribosome-inactivating protein bryodin II; AltName: Full=BD2; AltNa... [more]
gi|530776695|emb|CCD28533.1|1.8e-3353.13ribosome inactivating protein, partial [Momordica charantia][more]
gi|530776783|emb|CCD30689.1|4.0e-3353.50ribosome inactivating protein [Momordica charantia][more]
gi|530776777|emb|CCD30686.1|8.9e-3353.50ribosome inactivating protein [Momordica charantia][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001574Ribosome_inactivat_prot
IPR016138Ribosome_inactivat_prot_sub1
IPR017989Ribosome_inactivat_1/2
Vocabulary: Biological Process
TermDefinition
GO:0017148negative regulation of translation
Vocabulary: Molecular Function
TermDefinition
GO:0030598rRNA N-glycosylase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
biological_process GO:0017148 negative regulation of translation
biological_process GO:0051607 defense response to virus
biological_process GO:0009405 pathogenesis
cellular_component GO:0005575 cellular_component
molecular_function GO:0030598 rRNA N-glycosylase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU79206watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007193Cla007193.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU79206WMU79206transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001574Ribosome-inactivating proteinPFAMPF00161RIPcoord: 36..183
score: 4.4
IPR001574Ribosome-inactivating proteinunknownSSF56371Ribosome inactivating proteins (RIP)coord: 28..184
score: 1.57
IPR016138Ribosome-inactivating protein, subdomain 1GENE3DG3DSA:3.40.420.10coord: 27..183
score: 2.4
IPR017989Ribosome-inactivating protein subgroupPRINTSPR00396SHIGARICINcoord: 178..198
score: 2.3E-15coord: 148..162
score: 2.3E-15coord: 38..51
score: 2.3E-15coord: 86..101
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla007193Cla97C08G147410Watermelon (97103) v2wmwmbB107
Cla007193ClCG08G004120Watermelon (Charleston Gray)wcgwmB409
Cla007193Lsi08G003360Bottle gourd (USVL1VR-Ls)lsiwmB476
Cla007193Bhi04G001656Wax gourdwgowmB303
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla007193Cucurbita maxima (Rimu)cmawmB337
Cla007193Cucurbita maxima (Rimu)cmawmB863
Cla007193Cucurbita moschata (Rifu)cmowmB333
Cla007193Cucurbita moschata (Rifu)cmowmB850
Cla007193Cucurbita pepo (Zucchini)cpewmB143
Cla007193Cucurbita pepo (Zucchini)cpewmB323
Cla007193Silver-seed gourdcarwmB0081
Cla007193Silver-seed gourdcarwmB0208