Cla007182 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007182
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Multicopper oxidase type 1 (AHRD V1 -- A2Q4H7_MEDTR)
Location	Chr8 : 7690392 .. 7690684 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGAACTACATTTGTATGTTCACTCACTTCCTTGTTCTTGGTTTTGAGCTTCAGCTGCATCAATGGTGAAGACCCATATAGGTTTACCTGGAATATCACATATGGAGACATATGGCCTCTTGGAGTAAAGCAACAGGTATTATATTTATATCAATGTAACAACCATTTTCTTGTTTGGCTTGAAGATGTATAATCCTCCATTGTGTTACTGATTCTTTTTTCAGGGTATTTTGATTAATGGGCAATTTCCAGGGCCACAGATTGAGGCAGTTACTAATGAGAACTTGA

mRNA sequence

ATGAGAGGAACTACATTTGTATGTTCACTCACTTCCTTGTTCTTGGTTTTGAGCTTCAGCTGCATCAATGGTGAAGACCCATATAGGTTTACCTGGAATATCACATATGGAGACATATGGCCTCTTGGAGTAAAGCAACAGGGCCACAGATTGAGGCAGTTACTAATGAGAACTTGA

Coding sequence (CDS)

ATGAGAGGAACTACATTTGTATGTTCACTCACTTCCTTGTTCTTGGTTTTGAGCTTCAGCTGCATCAATGGTGAAGACCCATATAGGTTTACCTGGAATATCACATATGGAGACATATGGCCTCTTGGAGTAAAGCAACAGGGCCACAGATTGAGGCAGTTACTAATGAGAACTTGA

Protein sequence

MRGTTFVCSLTSLFLVLSFSCINGEDPYRFTWNITYGDIWPLGVKQQGHRLRQLLMRT

Homology

[Close]

BLAST of Cla007182 vs. TrEMBL
Match: A0A0A0K1K9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G043570 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.2e-16
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 1  MRGTTFVCSLTSLFLVLSFSCINGEDPYRF-TWNITYGDIWPLGVKQQG 49
          MR  +F+CSLT LFLVLSFSCINGEDPYRF  WNITYGDIWPLGVKQQG
Sbjct: 1  MRKNSFLCSLTFLFLVLSFSCINGEDPYRFLNWNITYGDIWPLGVKQQG 49

[Close]

BLAST of Cla007182 vs. TrEMBL
Match: A0A0B2S927_GLYSO (L-ascorbate oxidase like OS=Glycine soja GN=glysoja_017277 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-08
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 13 LFLVLSFSCINGEDPYRF-TWNITYGDIWPLGVKQQG 49
          LFLVL  +C+ GEDPYRF TWN+TYGDI+PLGVKQQG
Sbjct: 11 LFLVLLVACVRGEDPYRFYTWNVTYGDIYPLGVKQQG 47

[Close]

BLAST of Cla007182 vs. TrEMBL
Match: I1KFE9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G307100 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-08
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 13 LFLVLSFSCINGEDPYRF-TWNITYGDIWPLGVKQQG 49
          LFLVL  +C+ GEDPYRF TWN+TYGDI+PLGVKQQG
Sbjct: 11 LFLVLLVACVRGEDPYRFYTWNVTYGDIYPLGVKQQG 47

[Close]

BLAST of Cla007182 vs. TrEMBL
Match: I1KFF0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G307100 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-08
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 13 LFLVLSFSCINGEDPYRF-TWNITYGDIWPLGVKQQG 49
          LFLVL  +C+ GEDPYRF TWN+TYGDI+PLGVKQQG
Sbjct: 11 LFLVLLVACVRGEDPYRFYTWNVTYGDIYPLGVKQQG 47

[Close]

BLAST of Cla007182 vs. TrEMBL
Match: A0A0B2QIR8_GLYSO (L-ascorbate oxidase like OS=Glycine soja GN=glysoja_006699 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-08
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 13 LFLVLSFSCINGEDPYRF-TWNITYGDIWPLGVKQQG 49
          LFLVL  SC  GEDPYRF TWN+TYGDI+PLGVKQQG
Sbjct: 11 LFLVLLVSCARGEDPYRFYTWNVTYGDIYPLGVKQQG 47

[Close]

BLAST of Cla007182 vs. NCBI nr
Match: gi|449453507|ref|XP_004144498.1| (PREDICTED: L-ascorbate oxidase homolog [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-15
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 1  MRGTTFVCSLTSLFLVLSFSCINGEDPYRF-TWNITYGDIWPLGVKQQG 49
          MR  +F+CSLT LFLVLSFSCINGEDPYRF  WNITYGDIWPLGVKQQG
Sbjct: 1  MRKNSFLCSLTFLFLVLSFSCINGEDPYRFLNWNITYGDIWPLGVKQQG 49

[Close]

BLAST of Cla007182 vs. NCBI nr
Match: gi|700188282|gb|KGN43515.1| (hypothetical protein Csa_7G043570 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-15
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 1  MRGTTFVCSLTSLFLVLSFSCINGEDPYRF-TWNITYGDIWPLGVKQQG 49
          MR  +F+CSLT LFLVLSFSCINGEDPYRF  WNITYGDIWPLGVKQQG
Sbjct: 1  MRKNSFLCSLTFLFLVLSFSCINGEDPYRFLNWNITYGDIWPLGVKQQG 49

[Close]

BLAST of Cla007182 vs. NCBI nr
Match: gi|659110852|ref|XP_008455444.1| (PREDICTED: L-ascorbate oxidase homolog [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-14
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1


Query: 1  MRGTTFVCSLTSLFLVLSFSCINGEDPYR-FTWNITYGDIWPLGVKQQG 49
          M   +F+ SLTSLFLVLSFSCI GEDPYR FTWNITYGDIWPLGVKQQG
Sbjct: 1  MSENSFLYSLTSLFLVLSFSCIYGEDPYRFFTWNITYGDIWPLGVKQQG 49

[Close]

BLAST of Cla007182 vs. NCBI nr
Match: gi|720088559|ref|XP_010244491.1| (PREDICTED: L-ascorbate oxidase homolog [Nelumbo nucifera])

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-08
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 1


Query: 7  VCSLTSLFLVLSFSCINGEDPYR-FTWNITYGDIWPLGVKQQG 49
          +CSL   F     SCIN EDPYR FTWN+TYGDI+PLGVKQQG
Sbjct: 7  LCSLLFFFFFFLVSCINAEDPYRFFTWNVTYGDIYPLGVKQQG 49

[Close]

BLAST of Cla007182 vs. NCBI nr
Match: gi|947107771|gb|KRH56154.1| (hypothetical protein GLYMA_06G307100 [Glycine max])

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-08
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 13 LFLVLSFSCINGEDPYRF-TWNITYGDIWPLGVKQQG 49
          LFLVL  +C+ GEDPYRF TWN+TYGDI+PLGVKQQG
Sbjct: 11 LFLVLLVACVRGEDPYRFYTWNVTYGDIYPLGVKQQG 47

The following BLAST results are available for this feature:

BLAST of Cla007182 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1K9_CUCSA	7.2e-16	85.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G043570 PE=4 SV=1	[more]
A0A0B2S927_GLYSO	1.9e-08	78.38	L-ascorbate oxidase like OS=Glycine soja GN=glysoja_017277 PE=4 SV=1	[more]
I1KFE9_SOYBN	1.9e-08	78.38	Uncharacterized protein OS=Glycine max GN=GLYMA_06G307100 PE=4 SV=1	[more]
I1KFF0_SOYBN	1.9e-08	78.38	Uncharacterized protein OS=Glycine max GN=GLYMA_06G307100 PE=4 SV=1	[more]
A0A0B2QIR8_GLYSO	2.5e-08	81.08	L-ascorbate oxidase like OS=Glycine soja GN=glysoja_006699 PE=4 SV=1	[more]

BLAST of Cla007182 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453507\|ref\|XP_004144498.1\|	1.0e-15	85.71	PREDICTED: L-ascorbate oxidase homolog [Cucumis sativus]	[more]
gi\|700188282\|gb\|KGN43515.1\|	1.0e-15	85.71	hypothetical protein Csa_7G043570 [Cucumis sativus]	[more]
gi\|659110852\|ref\|XP_008455444.1\|	4.4e-14	83.67	PREDICTED: L-ascorbate oxidase homolog [Cucumis melo]	[more]
gi\|720088559\|ref\|XP_010244491.1\|	1.6e-08	69.77	PREDICTED: L-ascorbate oxidase homolog [Nelumbo nucifera]	[more]
gi\|947107771\|gb\|KRH56154.1\|	2.7e-08	78.38	hypothetical protein GLYMA_06G307100 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007182	Cla007182.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11709	MULTI-COPPER OXIDASE	coord: 13..43 score: 8.1
None	No IPR available	PANTHER	PTHR11709:SF106	SUBFAMILY NOT NAMED	coord: 13..43 score: 8.1
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..21 score:

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007182	Cucumber (Gy14) v1	cgywmB657
Cla007182	Cucurbita maxima (Rimu)	cmawmB337
Cla007182	Cucurbita maxima (Rimu)	cmawmB863
Cla007182	Cucurbita moschata (Rifu)	cmowmB333
Cla007182	Cucurbita moschata (Rifu)	cmowmB850
Cla007182	Wild cucumber (PI 183967)	cpiwmB491
Cla007182	Watermelon (Charleston Gray)	wcgwmB409
Cla007182	Cucumber (Chinese Long) v2	cuwmB476
Cla007182	Cucurbita pepo (Zucchini)	cpewmB143
Cla007182	Cucurbita pepo (Zucchini)	cpewmB323
Cla007182	Bottle gourd (USVL1VR-Ls)	lsiwmB476
Cla007182	Cucumber (Gy14) v2	cgybwmB447
Cla007182	Melon (DHL92) v3.6.1	medwmB298
Cla007182	Silver-seed gourd	carwmB0081
Cla007182	Silver-seed gourd	carwmB0208
Cla007182	Cucumber (Chinese Long) v3	cucwmB502
Cla007182	Watermelon (97103) v2	wmwmbB107
Cla007182	Wax gourd	wgowmB303