Cla007055 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007055
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Alcohol dehydrogenase (AHRD V1 ***- Q4R1F0_ORYRU); contains Interpro domain(s) IPR011032 GroES-like
Location	Chr6 : 1317385 .. 1317688 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCCAAGGTCAAGTTATCACTTGCAAAGGTACTCATTCCATATACCCATTTCATTCTTCCTCTCTATGCTTCACTTTTTCCAGCCACCGATCCTTTTGATTCAACTACCTTTGTTTCTTTCTCAGCGGCGGTGGCCTGGGAACCCAATAAGCCATTGGTGATCGAGGATGTTCAGGTGGCTCCGCCGCAAGCCGGCGAGGTCCGTGTCAAGATCCTCTACACTGCTCTTTGTCACACTGATGCTTATACCTGGAGTGGCAAGGTTGTTTTTCTTCTCTTCGATCTTCTAAATCCTTAA

mRNA sequence

ATGGCAACCCAAGGTCAAGTTATCACTTGCAAAGCGGCGGTGGCCTGGGAACCCAATAAGCCATTGGTGATCGAGGATGTTCAGGTGGCTCCGCCGCAAGCCGGCGAGGTCCGTGTCAAGATCCTCTACACTGCTCTTTGTCACACTGATGCTTATACCTGGAGTGGCAAGGTTGTTTTTCTTCTCTTCGATCTTCTAAATCCTTAA

Coding sequence (CDS)

ATGGCAACCCAAGGTCAAGTTATCACTTGCAAAGCGGCGGTGGCCTGGGAACCCAATAAGCCATTGGTGATCGAGGATGTTCAGGTGGCTCCGCCGCAAGCCGGCGAGGTCCGTGTCAAGATCCTCTACACTGCTCTTTGTCACACTGATGCTTATACCTGGAGTGGCAAGGTTGTTTTTCTTCTCTTCGATCTTCTAAATCCTTAA

Protein sequence

MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKVVFLLFDLLNP

Homology

[Close]

BLAST of Cla007055 vs. Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 4.5e-26
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 58
          MATQGQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVR+KILYTALCHTDAYTWSGK
Sbjct: 1  MATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGK 57

[Close]

BLAST of Cla007055 vs. Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.4e-24
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 1


Query: 3  TQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 58
          TQGQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVRVKIL+TALCHTD YTWSGK
Sbjct: 5  TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGK 59

[Close]

BLAST of Cla007055 vs. Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-23
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 1


Query: 2  ATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 58
          +TQGQVITCKAAVAWE NKP+ IEDVQVAPPQAGEVRVKIL+TALCHTD YTWSGK
Sbjct: 4  STQGQVITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGK 59

[Close]

BLAST of Cla007055 vs. Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.5e-23
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1


Query: 2  ATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 58
          +TQGQVITCKAAVAWE N+P+ IEDVQVAPPQAGEVRVKIL+TALCHTD YTWSGK
Sbjct: 4  STQGQVITCKAAVAWEANRPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGK 59

[Close]

BLAST of Cla007055 vs. Swiss-Prot
Match: ADHX_PEA (Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.9e-22
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 2  ATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 58
          ATQGQVITCKAAVAWEPNKPL IEDV+VAPPQA EVR++IL+TALCHTDAYT  GK
Sbjct: 1  ATQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTLGGK 56

[Close]

BLAST of Cla007055 vs. TrEMBL
Match: K4CU67_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-25
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 1


Query: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKVVF 60
          MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVK+LYTALCHTDAYTWSGK+  
Sbjct: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKLKI 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of Cla007055 vs. TrEMBL
Match: W9QX22_9ROSA (S-(hydroxymethyl)glutathione dehydrogenase OS=Morus notabilis GN=L484_015899 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-25
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1


Query: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKVV- 60
          MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+KIL+TALCHTDAYTW GK++ 
Sbjct: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWGGKIIC 60

Query: 61 ----FLLFDLLNP 69
              + LF L +P
Sbjct: 61 RNTAYTLFTLQDP 73

[Close]

BLAST of Cla007055 vs. TrEMBL
Match: A0A068U5I2_COFCA (S-(hydroxymethyl)glutathione dehydrogenase OS=Coffea canephora GN=GSCOC_T00016296001 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 58
          MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK
Sbjct: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 57

[Close]

BLAST of Cla007055 vs. TrEMBL
Match: A0A0A0KBZ1_CUCSA (S-(hydroxymethyl)glutathione dehydrogenase OS=Cucumis sativus GN=Csa_6G087920 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 58
          MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK
Sbjct: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 57

[Close]

BLAST of Cla007055 vs. TrEMBL
Match: E9ND19_9SOLN (S-(hydroxymethyl)glutathione dehydrogenase OS=Solanum chmielewskii GN=ADH3 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.5e-25
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 58
          MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVK+LYTALCHTDAYTWSGK
Sbjct: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGK 57

[Close]

BLAST of Cla007055 vs. NCBI nr
Match: gi|703081968|ref|XP_010091830.1| (Alcohol dehydrogenase class-3 [Morus notabilis])

HSP 1 Score: 122.5 bits (306), Expect = 2.9e-25
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1


Query: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKVV- 60
          MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+KIL+TALCHTDAYTW GK++ 
Sbjct: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWGGKIIC 60

Query: 61 ----FLLFDLLNP 69
              + LF L +P
Sbjct: 61 RNTAYTLFTLQDP 73

[Close]

BLAST of Cla007055 vs. NCBI nr
Match: gi|449445644|ref|XP_004140582.1| (PREDICTED: alcohol dehydrogenase class-3 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 58
          MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK
Sbjct: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 57

[Close]

BLAST of Cla007055 vs. NCBI nr
Match: gi|661892652|emb|CDP03810.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 58
          MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK
Sbjct: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 57

[Close]

BLAST of Cla007055 vs. NCBI nr
Match: gi|659120043|ref|XP_008459982.1| (PREDICTED: alcohol dehydrogenase class-3 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 58
          MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK
Sbjct: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 57

[Close]

BLAST of Cla007055 vs. NCBI nr
Match: gi|353703786|ref|NP_001238796.1| (alcohol dehydrogenase class III [Solanum lycopersicum])

HSP 1 Score: 121.3 bits (303), Expect = 6.4e-25
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGK 58
          MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVK+LYTALCHTDAYTWSGK
Sbjct: 1  MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGK 57

The following BLAST results are available for this feature:

BLAST of Cla007055 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ADHX_ARATH	4.5e-26	96.49	Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2	[more]
ADHX_MAIZE	5.4e-24	94.55	Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1	[more]
ADHX_ORYSI	1.6e-23	89.29	Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1	[more]
ADHX_ORYSJ	3.5e-23	87.50	Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE...	[more]
ADHX_PEA	3.9e-22	85.71	Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1	[more]

BLAST of Cla007055 vs. TrEMBL


Match Name	E-value	Identity	Description
K4CU67_SOLLC	2.0e-25	93.44	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
W9QX22_9ROSA	2.0e-25	79.45	S-(hydroxymethyl)glutathione dehydrogenase OS=Morus notabilis GN=L484_015899 PE=...	[more]
A0A068U5I2_COFCA	3.4e-25	100.00	S-(hydroxymethyl)glutathione dehydrogenase OS=Coffea canephora GN=GSCOC_T0001629...	[more]
A0A0A0KBZ1_CUCSA	3.4e-25	100.00	S-(hydroxymethyl)glutathione dehydrogenase OS=Cucumis sativus GN=Csa_6G087920 PE...	[more]
E9ND19_9SOLN	4.5e-25	98.25	S-(hydroxymethyl)glutathione dehydrogenase OS=Solanum chmielewskii GN=ADH3 PE=2 ...	[more]

BLAST of Cla007055 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703081968\|ref\|XP_010091830.1\|	2.9e-25	79.45	Alcohol dehydrogenase class-3 [Morus notabilis]	[more]
gi\|449445644\|ref\|XP_004140582.1\|	4.9e-25	100.00	PREDICTED: alcohol dehydrogenase class-3 [Cucumis sativus]	[more]
gi\|661892652\|emb\|CDP03810.1\|	4.9e-25	100.00	unnamed protein product [Coffea canephora]	[more]
gi\|659120043\|ref\|XP_008459982.1\|	4.9e-25	100.00	PREDICTED: alcohol dehydrogenase class-3 [Cucumis melo]	[more]
gi\|353703786\|ref\|NP_001238796.1\|	6.4e-25	98.25	alcohol dehydrogenase class III [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002085	Alcohol dehydrogenase superfamily, zinc-type
IPR011032	GroES-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0016491	oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006069	ethanol oxidation
biological_process	GO:0008219	cell death
biological_process	GO:0046294	formaldehyde catabolic process
biological_process	GO:0048316	seed development
biological_process	GO:0046292	formaldehyde metabolic process
biological_process	GO:0010286	heat acclimation
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0051903	S-(hydroxymethyl)glutathione dehydrogenase activity
molecular_function	GO:0004022	alcohol dehydrogenase (NAD) activity
molecular_function	GO:0080007	S-nitrosoglutathione reductase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004024	alcohol dehydrogenase activity, zinc-dependent

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU31404	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU60180	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007055	Cla007055.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU31404	WMU31404	transcribed_cluster
WMU60180	WMU60180	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002085	Alcohol dehydrogenase superfamily, zinc-type	PANTHER	PTHR11695	ALCOHOL DEHYDROGENASE RELATED	coord: 22..57 score: 3.1
IPR011032	GroES-like	GENE3D	G3DSA:3.90.180.10		coord: 1..58 score: 2.6
IPR011032	GroES-like	unknown	SSF50129	GroES-like	coord: 2..60 score: 3.2
None	No IPR available	PANTHER	PTHR11695:SF432	SUBFAMILY NOT NAMED	coord: 22..57 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007055	Cla97C06G110610	Watermelon (97103) v2	wmwmbB407
Cla007055	ClCG06G001340	Watermelon (Charleston Gray)	wcgwmB345
Cla007055	CSPI06G06910	Wild cucumber (PI 183967)	cpiwmB556
Cla007055	Cucsa.348790	Cucumber (Gy14) v1	cgywmB626
Cla007055	CmaCh08G000480	Cucurbita maxima (Rimu)	cmawmB879
Cla007055	CmaCh17G013640	Cucurbita maxima (Rimu)	cmawmB352
Cla007055	CmoCh08G000480	Cucurbita moschata (Rifu)	cmowmB868
Cla007055	Lsi09G018050	Bottle gourd (USVL1VR-Ls)	lsiwmB041
Cla007055	Cp4.1LG17g09710	Cucurbita pepo (Zucchini)	cpewmB341
Cla007055	Cp4.1LG12g10220	Cucurbita pepo (Zucchini)	cpewmB156
Cla007055	CsGy6G006940	Cucumber (Gy14) v2	cgybwmB501
Cla007055	MELO3C022399.2	Melon (DHL92) v3.6.1	medwmB138
Cla007055	Carg11533	Silver-seed gourd	carwmB0015
Cla007055	Carg04884	Silver-seed gourd	carwmB0085
Cla007055	CsaV3_6G007280	Cucumber (Chinese Long) v3	cucwmB562
Cla007055	Bhi12G002076	Wax gourd	wgowmB092

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007055	Cucurbita moschata (Rifu)	cmowmB347
Cla007055	Melon (DHL92) v3.5.1	mewmB140
Cla007055	Cucumber (Chinese Long) v2	cuwmB537