Cla007026 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007026
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Agglutinin (AHRD V1 ***- Q6YNX3_AMACA); contains Interpro domain(s) IPR008998 Agglutinin
Location	Chr6 : 953480 .. 953947 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTTCAACTACCAAAGTTCATTGGGCTCAAATCCAACAACTACAACGATAAATACTTACGCTACATCCACGAAGACTCTGAGGCACATGGCTTGCATCAATTCTCCAGCGGTGTCGCGTTGAGCGGCTACGCAAAATTCGAGGTGGAACAGGCAAAGATTGGCAATGGATTGGTCCATATCCGATCCGTGTACAACAACAAATATTGGGTTCGTCGGTCTTCAACTGAATGGTGGATCGCCGCCAATGCAGACGAGCCAGAAGAAGACCAATCCAAATGGACATGCACATTATTCGAACCCGTTCGTGTGAATGACGACGGTCTTACGATTCGCCTCCGCCACGTCCAACTAGGCCACTTTGCATGTCTTTGGCGAGTCCCTCTTCCCTACGAAGCTTGCTTGTATGCAGCATCGGCAAATCACGACCAATCGCTCTTAGACATCTTTCCAATTTTTGATTGA

mRNA sequence

ATGGCTCTTCAACTACCAAAGTTCATTGGGCTCAAATCCAACAACTACAACGATAAATACTTACGCTACATCCACGAAGACTCTGAGGCACATGGCTTGCATCAATTCTCCAGCGGTGTCGCGTTGAGCGGCTACGCAAAATTCGAGGTGGAACAGGCAAAGATTGGCAATGGATTGGTCCATATCCGATCCGTGTACAACAACAAATATTGGGTTCGTCGGTCTTCAACTGAATGGTGGATCGCCGCCAATGCAGACGAGCCAGAAGAAGACCAATCCAAATGGACATGCACATTATTCGAACCCGTTCGTGTGAATGACGACGGTCTTACGATTCGCCTCCGCCACGTCCAACTAGGCCACTTTGCATGTCTTTGGCGAGTCCCTCTTCCCTACGAAGCTTGCTTGTATGCAGCATCGGCAAATCACGACCAATCGCTCTTAGACATCTTTCCAATTTTTGATTGA

Coding sequence (CDS)

ATGGCTCTTCAACTACCAAAGTTCATTGGGCTCAAATCCAACAACTACAACGATAAATACTTACGCTACATCCACGAAGACTCTGAGGCACATGGCTTGCATCAATTCTCCAGCGGTGTCGCGTTGAGCGGCTACGCAAAATTCGAGGTGGAACAGGCAAAGATTGGCAATGGATTGGTCCATATCCGATCCGTGTACAACAACAAATATTGGGTTCGTCGGTCTTCAACTGAATGGTGGATCGCCGCCAATGCAGACGAGCCAGAAGAAGACCAATCCAAATGGACATGCACATTATTCGAACCCGTTCGTGTGAATGACGACGGTCTTACGATTCGCCTCCGCCACGTCCAACTAGGCCACTTTGCATGTCTTTGGCGAGTCCCTCTTCCCTACGAAGCTTGCTTGTATGCAGCATCGGCAAATCACGACCAATCGCTCTTAGACATCTTTCCAATTTTTGATTGA

Protein sequence

MALQLPKFIGLKSNNYNDKYLRYIHEDSEAHGLHQFSSGVALSGYAKFEVEQAKIGNGLVHIRSVYNNKYWVRRSSTEWWIAANADEPEEDQSKWTCTLFEPVRVNDDGLTIRLRHVQLGHFACLWRVPLPYEACLYAASANHDQSLLDIFPIFD

Homology

[Close]

BLAST of Cla007026 vs. TrEMBL
Match: A0A0A0KA14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G084570 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.9e-65
Identity = 114/156 (73.08%), Postives = 136/156 (87.18%), Query Frame = 1


Query: 3   LQLPKFIGLKSNNYNDKYLRYIHEDSEAHGLHQFSSGVALSGYAKFEVEQAKIGNGLVHI 62
           ++LP+FIGL+  NYN+KYLRYI+ED+EAHGLHQFSS   +SGYAKF+VE+A IGNG VHI
Sbjct: 1   MELPEFIGLQCKNYNNKYLRYIYEDNEAHGLHQFSSDTVVSGYAKFKVEKANIGNGYVHI 60

Query: 63  RSVYNNKYWVRRSSTEWWIAANADEPEEDQSKWTCTLFEPVRV---NDDGLTIRLRHVQL 122
           RS+YNNKYWVRRS TEWWI ANADEP+E++  WTCTLFEP++V   N+ GLTIRLRHVQL
Sbjct: 61  RSLYNNKYWVRRSPTEWWITANADEPDENECTWTCTLFEPIQVDSCNNSGLTIRLRHVQL 120

Query: 123 GHFACLWRVPLPYEACLYAASANHDQSLLDIFPIFD 156
           GHF CLWR+P PYEACL+AAS +HD+S LDIF +FD
Sbjct: 121 GHFLCLWRIPPPYEACLFAASTDHDESHLDIFTVFD 156

[Close]

BLAST of Cla007026 vs. TrEMBL
Match: F6HZZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.6e-49
Identity = 91/153 (59.48%), Postives = 113/153 (73.86%), Query Frame = 1


Query: 3   LQLPKFIGLKSNNYNDKYLRYIHEDSEAHGLHQFSSGVALSGYAKFEVEQAKIGNGLVHI 62
           + LP+++ LKS  YN+KYLRYIHED + HG  QFS    ++ Y+K++VE+AK G GLVHI
Sbjct: 1   MALPRYVVLKSK-YNNKYLRYIHEDVQIHGFLQFSGEEVVTPYSKYQVERAKNGGGLVHI 60

Query: 63  RSVYNNKYWVRRSSTEWWIAANADEPEEDQSKWTCTLFEPVRVNDDGLTIRLRHVQLGHF 122
           R  YNNKYWVR S   WWI A ADEP+EDQS W+CTLFEPV V+ D  T+R RHVQLGH+
Sbjct: 61  RCCYNNKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVHVDGDAQTLRFRHVQLGHY 120

Query: 123 ACLWRVPLPYEACLYAASANHDQSLLDIFPIFD 156
           ACLWR+P PY +CL+A S + D  L D+  I D
Sbjct: 121 ACLWRLPPPYGSCLFAGSTSADNDLCDVCTIID 152

[Close]

BLAST of Cla007026 vs. TrEMBL
Match: D7U3H5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.6e-49
Identity = 91/153 (59.48%), Postives = 115/153 (75.16%), Query Frame = 1


Query: 3   LQLPKFIGLKSNNYNDKYLRYIHEDSEAHGLHQFSSGVALSGYAKFEVEQAKIGNGLVHI 62
           + LP+++ LKS  YNDKYLRYIHED + HG  QFS    ++ Y+K++VE+AK G GLVHI
Sbjct: 1   MALPRYVVLKSK-YNDKYLRYIHEDVQIHGFLQFSGEEVVTPYSKYQVERAKNGKGLVHI 60

Query: 63  RSVYNNKYWVRRSSTEWWIAANADEPEEDQSKWTCTLFEPVRVNDDGLTIRLRHVQLGHF 122
           R  YNNKYWVR S   WWI A ADEP+EDQS W+CTLFEPV V+ +  T+R RHVQLGH+
Sbjct: 61  RCCYNNKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVHVDGNAQTLRFRHVQLGHY 120

Query: 123 ACLWRVPLPYEACLYAASANHDQSLLDIFPIFD 156
           ACLWR+P PY +CL+A SA+ ++ L D+  I D
Sbjct: 121 ACLWRLPPPYGSCLFAGSASPNKDLCDVCTIID 152

[Close]

BLAST of Cla007026 vs. TrEMBL
Match: A5AYS3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020655 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.0e-49
Identity = 92/153 (60.13%), Postives = 112/153 (73.20%), Query Frame = 1


Query: 3   LQLPKFIGLKSNNYNDKYLRYIHEDSEAHGLHQFSSGVALSGYAKFEVEQAKIGNGLVHI 62
           ++LP+++  KS  YN+K LRYIHED E HG  QFS    ++ Y+K+ VE AK G GLVHI
Sbjct: 1   MELPRYVVFKSK-YNNKXLRYIHEDGEIHGFLQFSGEEVMTPYSKYHVEMAKNGKGLVHI 60

Query: 63  RSVYNNKYWVRRSSTEWWIAANADEPEEDQSKWTCTLFEPVRVNDDGLTIRLRHVQLGHF 122
           R  YNNKYWVR S   WWI A ADE +EDQS WTCTLFEPV V+ D  T+R RHVQLGH+
Sbjct: 61  RCCYNNKYWVRWSENHWWIVAGADETDEDQSLWTCTLFEPVYVDGDAQTLRFRHVQLGHY 120

Query: 123 ACLWRVPLPYEACLYAASANHDQSLLDIFPIFD 156
           ACLWR+P PY +CL+A SA+ D+ L D+F I D
Sbjct: 121 ACLWRLPPPYGSCLFAGSASPDKDLYDVFTIID 152

[Close]

BLAST of Cla007026 vs. TrEMBL
Match: D7U3H9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06060 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.8e-49
Identity = 92/153 (60.13%), Postives = 112/153 (73.20%), Query Frame = 1


Query: 3   LQLPKFIGLKSNNYNDKYLRYIHEDSEAHGLHQFSSGVALSGYAKFEVEQAKIGNGLVHI 62
           ++LP+++  KS  YN+K LRYIHED E HG  QFS    ++ Y+K+ VE AK G GLVHI
Sbjct: 1   MELPRYVVFKSK-YNNKCLRYIHEDGEIHGFLQFSGEEVMTPYSKYHVEMAKNGKGLVHI 60

Query: 63  RSVYNNKYWVRRSSTEWWIAANADEPEEDQSKWTCTLFEPVRVNDDGLTIRLRHVQLGHF 122
           R  YNNKYWVR S   WWI A ADE +EDQS WTCTLFEPV V+ D  T+R RHVQLGH+
Sbjct: 61  RCCYNNKYWVRWSENHWWIVAGADETDEDQSLWTCTLFEPVYVDGDAQTLRFRHVQLGHY 120

Query: 123 ACLWRVPLPYEACLYAASANHDQSLLDIFPIFD 156
           ACLWR+P PY +CL+A SA+ D+ L D+F I D
Sbjct: 121 ACLWRLPPPYGSCLFAGSASPDKDLYDVFTIID 152

[Close]

BLAST of Cla007026 vs. NCBI nr
Match: gi|449445850|ref|XP_004140685.1| (PREDICTED: uncharacterized protein LOC101213433 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 8.5e-65
Identity = 114/156 (73.08%), Postives = 136/156 (87.18%), Query Frame = 1


Query: 3   LQLPKFIGLKSNNYNDKYLRYIHEDSEAHGLHQFSSGVALSGYAKFEVEQAKIGNGLVHI 62
           ++LP+FIGL+  NYN+KYLRYI+ED+EAHGLHQFSS   +SGYAKF+VE+A IGNG VHI
Sbjct: 1   MELPEFIGLQCKNYNNKYLRYIYEDNEAHGLHQFSSDTVVSGYAKFKVEKANIGNGYVHI 60

Query: 63  RSVYNNKYWVRRSSTEWWIAANADEPEEDQSKWTCTLFEPVRV---NDDGLTIRLRHVQL 122
           RS+YNNKYWVRRS TEWWI ANADEP+E++  WTCTLFEP++V   N+ GLTIRLRHVQL
Sbjct: 61  RSLYNNKYWVRRSPTEWWITANADEPDENECTWTCTLFEPIQVDSCNNSGLTIRLRHVQL 120

Query: 123 GHFACLWRVPLPYEACLYAASANHDQSLLDIFPIFD 156
           GHF CLWR+P PYEACL+AAS +HD+S LDIF +FD
Sbjct: 121 GHFLCLWRIPPPYEACLFAASTDHDESHLDIFTVFD 156

[Close]

BLAST of Cla007026 vs. NCBI nr
Match: gi|659120119|ref|XP_008460024.1| (PREDICTED: uncharacterized protein LOC103498962 [Cucumis melo])

HSP 1 Score: 239.6 bits (610), Expect = 3.7e-60
Identity = 107/155 (69.03%), Postives = 131/155 (84.52%), Query Frame = 1


Query: 4   QLPKFIGLKSNNYNDKYLRYIHEDSEAHGLHQFSSGVALSGYAKFEVEQAKIGNGLVHIR 63
           +LPKFIGL+  NYN+KYLRY++ED+EAHGL QFSS   +SGYAKF+VE+AK+G G VHIR
Sbjct: 3   ELPKFIGLQCKNYNNKYLRYVYEDNEAHGLQQFSSDTVVSGYAKFQVEKAKMGKGYVHIR 62

Query: 64  SVYNNKYWVRRSSTEWWIAANADEPEEDQSKWTCTLFEPVRV---NDDGLTIRLRHVQLG 123
           S+YNNKYWVRRS TE+WI ANADEP+E++  WTCTLFEP+ V   N+ GLTIRLRHV L 
Sbjct: 63  SLYNNKYWVRRSPTEFWITANADEPDENEFTWTCTLFEPIPVDGCNNSGLTIRLRHVNLS 122

Query: 124 HFACLWRVPLPYEACLYAASANHDQSLLDIFPIFD 156
           H+ CLWR+P PYEAC++AAS +HD+S LDIF +FD
Sbjct: 123 HYLCLWRIPPPYEACMFAASPDHDESRLDIFTVFD 157

[Close]

BLAST of Cla007026 vs. NCBI nr
Match: gi|225465417|ref|XP_002264098.1| (PREDICTED: uncharacterized protein LOC100256767 [Vitis vinifera])

HSP 1 Score: 202.2 bits (513), Expect = 6.5e-49
Identity = 91/153 (59.48%), Postives = 115/153 (75.16%), Query Frame = 1


Query: 3   LQLPKFIGLKSNNYNDKYLRYIHEDSEAHGLHQFSSGVALSGYAKFEVEQAKIGNGLVHI 62
           + LP+++ LKS  YNDKYLRYIHED + HG  QFS    ++ Y+K++VE+AK G GLVHI
Sbjct: 1   MALPRYVVLKSK-YNDKYLRYIHEDVQIHGFLQFSGEEVVTPYSKYQVERAKNGKGLVHI 60

Query: 63  RSVYNNKYWVRRSSTEWWIAANADEPEEDQSKWTCTLFEPVRVNDDGLTIRLRHVQLGHF 122
           R  YNNKYWVR S   WWI A ADEP+EDQS W+CTLFEPV V+ +  T+R RHVQLGH+
Sbjct: 61  RCCYNNKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVHVDGNAQTLRFRHVQLGHY 120

Query: 123 ACLWRVPLPYEACLYAASANHDQSLLDIFPIFD 156
           ACLWR+P PY +CL+A SA+ ++ L D+  I D
Sbjct: 121 ACLWRLPPPYGSCLFAGSASPNKDLCDVCTIID 152

[Close]

BLAST of Cla007026 vs. NCBI nr
Match: gi|225465425|ref|XP_002264858.1| (PREDICTED: uncharacterized protein LOC100241465 [Vitis vinifera])

HSP 1 Score: 202.2 bits (513), Expect = 6.5e-49
Identity = 91/153 (59.48%), Postives = 113/153 (73.86%), Query Frame = 1


Query: 3   LQLPKFIGLKSNNYNDKYLRYIHEDSEAHGLHQFSSGVALSGYAKFEVEQAKIGNGLVHI 62
           + LP+++ LKS  YN+KYLRYIHED + HG  QFS    ++ Y+K++VE+AK G GLVHI
Sbjct: 1   MALPRYVVLKSK-YNNKYLRYIHEDVQIHGFLQFSGEEVVTPYSKYQVERAKNGGGLVHI 60

Query: 63  RSVYNNKYWVRRSSTEWWIAANADEPEEDQSKWTCTLFEPVRVNDDGLTIRLRHVQLGHF 122
           R  YNNKYWVR S   WWI A ADEP+EDQS W+CTLFEPV V+ D  T+R RHVQLGH+
Sbjct: 61  RCCYNNKYWVRWSKNHWWIVAGADEPDEDQSSWSCTLFEPVHVDGDAQTLRFRHVQLGHY 120

Query: 123 ACLWRVPLPYEACLYAASANHDQSLLDIFPIFD 156
           ACLWR+P PY +CL+A S + D  L D+  I D
Sbjct: 121 ACLWRLPPPYGSCLFAGSTSADNDLCDVCTIID 152

[Close]

BLAST of Cla007026 vs. NCBI nr
Match: gi|147838248|emb|CAN71829.1| (hypothetical protein VITISV_020655 [Vitis vinifera])

HSP 1 Score: 201.8 bits (512), Expect = 8.5e-49
Identity = 92/153 (60.13%), Postives = 112/153 (73.20%), Query Frame = 1


Query: 3   LQLPKFIGLKSNNYNDKYLRYIHEDSEAHGLHQFSSGVALSGYAKFEVEQAKIGNGLVHI 62
           ++LP+++  KS  YN+K LRYIHED E HG  QFS    ++ Y+K+ VE AK G GLVHI
Sbjct: 1   MELPRYVVFKSK-YNNKXLRYIHEDGEIHGFLQFSGEEVMTPYSKYHVEMAKNGKGLVHI 60

Query: 63  RSVYNNKYWVRRSSTEWWIAANADEPEEDQSKWTCTLFEPVRVNDDGLTIRLRHVQLGHF 122
           R  YNNKYWVR S   WWI A ADE +EDQS WTCTLFEPV V+ D  T+R RHVQLGH+
Sbjct: 61  RCCYNNKYWVRWSENHWWIVAGADETDEDQSLWTCTLFEPVYVDGDAQTLRFRHVQLGHY 120

Query: 123 ACLWRVPLPYEACLYAASANHDQSLLDIFPIFD 156
           ACLWR+P PY +CL+A SA+ D+ L D+F I D
Sbjct: 121 ACLWRLPPPYGSCLFAGSASPDKDLYDVFTIID 152

The following BLAST results are available for this feature:

BLAST of Cla007026 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA14_CUCSA	5.9e-65	73.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G084570 PE=4 SV=1	[more]
F6HZZ6_VITVI	4.6e-49	59.48	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=...	[more]
D7U3H5_VITVI	4.6e-49	59.48	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=...	[more]
A5AYS3_VITVI	6.0e-49	60.13	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020655 PE=4 SV=1	[more]
D7U3H9_VITVI	7.8e-49	60.13	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06060 PE=4 SV=...	[more]

BLAST of Cla007026 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445850\|ref\|XP_004140685.1\|	8.5e-65	73.08	PREDICTED: uncharacterized protein LOC101213433 [Cucumis sativus]	[more]
gi\|659120119\|ref\|XP_008460024.1\|	3.7e-60	69.03	PREDICTED: uncharacterized protein LOC103498962 [Cucumis melo]	[more]
gi\|225465417\|ref\|XP_002264098.1\|	6.5e-49	59.48	PREDICTED: uncharacterized protein LOC100256767 [Vitis vinifera]	[more]
gi\|225465425\|ref\|XP_002264858.1\|	6.5e-49	59.48	PREDICTED: uncharacterized protein LOC100241465 [Vitis vinifera]	[more]
gi\|147838248\|emb\|CAN71829.1\|	8.5e-49	60.13	hypothetical protein VITISV_020655 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008998	Agglutinin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009405	pathogenesis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007026	Cla007026.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008998	Agglutinin domain	PFAM	PF07468	Agglutinin	coord: 4..155 score: 1.5
IPR008998	Agglutinin domain	SMART	SM00791	agglutinin	coord: 3..155 score: 1.7
IPR008998	Agglutinin domain	unknown	SSF50382	Agglutinin	coord: 3..154 score: 1.44
None	No IPR available	GENE3D	G3DSA:2.80.10.50		coord: 4..155 score: 2.4
None	No IPR available	PANTHER	PTHR39244	FAMILY NOT NAMED	coord: 1..155 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007026	ClCG06G001060	Watermelon (Charleston Gray)	wcgwmB345
Cla007026	CSPI06G06570	Wild cucumber (PI 183967)	cpiwmB556
Cla007026	Cucsa.348530	Cucumber (Gy14) v1	cgywmB626
Cla007026	Cucsa.362010	Cucumber (Gy14) v1	cgywmB666
Cla007026	CsGy6G006630	Cucumber (Gy14) v2	cgybwmB501

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007026	Silver-seed gourd	carwmB0084
Cla007026	Silver-seed gourd	carwmB0765
Cla007026	Cucumber (Chinese Long) v3	cucwmB562
Cla007026	Watermelon (97103) v2	wmwmbB407
Cla007026	Wax gourd	wgowmB107
Cla007026	Cucurbita maxima (Rimu)	cmawmB355
Cla007026	Cucurbita maxima (Rimu)	cmawmB883
Cla007026	Cucurbita moschata (Rifu)	cmowmB350
Cla007026	Cucurbita moschata (Rifu)	cmowmB872
Cla007026	Melon (DHL92) v3.5.1	mewmB140
Cla007026	Cucumber (Chinese Long) v2	cuwmB537
Cla007026	Cucurbita pepo (Zucchini)	cpewmB344
Cla007026	Bottle gourd (USVL1VR-Ls)	lsiwmB041
Cla007026	Melon (DHL92) v3.6.1	medwmB138