Cla006864 (gene) Watermelon (97103) v1

Overview
NameCla006864
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionEndonuclease/exonuclease/phosphatase (AHRD V1 *-*- A2Q500_MEDTR)
LocationChr4 : 10986697 .. 10987348 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCAAGAAGATATTTTGTTCAAGTTCTTGTTACTGCCAATTATTTGCTTATCAGATGTTGTGTTGGGTAACCTAGTTGATGTTGGGGATGTTGAGAGGGGGTCGGAGGCTGGGATGGGTAAGGAATTGGTGGTGGAGGAGGCTGAGGATGAGTTTACCCCTTTGACTAGGCATAGAAGGGAGGCAGTAGTGAGATCTAATCAGAAGGGTGGTCTGGGGATGGTGGTTCACAACTCCTTTGAGACTCCGCAGGGATGGGTGAGGACTCCTTGGTGTTGGCATTGGTCGATGATAGGAGATGGTGGTGAGCAGGATGATCCTTTGGGAGAGACTATAAGGGCCCACAGGGAATGTTGCCATGATTAGCTGGTGTTCGTGGAATGTGAGAGGTCTTAATGATCCCATGAAATGTAGAGCTGTGCATGAGTTTTTGCAGTTTTCTTTTGTTGAGGTGTGTTATCTTGTGGAGACTAGAGTGCAACAGGAGAATTTTGATTCAGTTGTGGCTAGATTTGGGATGAAATGGGGAAGTGTGTGTAGATATAGTGTTGCGGGTGTGAGGCGGAACTGGGTGTTGTGGAATGCCTCTCTGTATGACTTTAGGCCTGGTGTTGTGGAGGATCATGTGAGACCCGAAATTCTGACCTAG

mRNA sequence

ATGCTTCAAGAAGATATTTTGTTCAAGTTCTTGTTACTGCCAATTATTTGCTTATCAGATGTTGTGTTGGGTAACCTAGTTGATGTTGGGGATGTTGAGAGGGGGTCGGAGGCTGGGATGGGTAAGGAATTGGTGGTGGAGGAGGCTGAGGATGAGTTTACCCCTTTGACTAGGCATAGAAGGGAGGCAGTAGTGAGATCTAATCAGAAGGGTGGTCTGGGGATGGTGGTTCACAACTCCTTTGAGACTCCGCAGGGATGGGTGAGGACTCCTTGGTGTTGGCATTGGTCGATGATAGGAGATGGTGGTCTTAATGATCCCATGAAATGTAGAGCTGTGCATGAGTTTTTGCAGTTTTCTTTTGTTGAGGTGTGTTATCTTGTGGAGACTAGAGTGCAACAGGAGAATTTTGATTCAGTTGTGGCTAGATTTGGGATGAAATGGGGAAGTGTGTGTAGATATAGTGTTGCGGGTGTGAGGCGGAACTGGGTGTTGTGGAATGCCTCTCTGTATGACTTTAGGCCTGGTGTTGTGGAGGATCATGTGAGACCCGAAATTCTGACCTAG

Coding sequence (CDS)

ATGCTTCAAGAAGATATTTTGTTCAAGTTCTTGTTACTGCCAATTATTTGCTTATCAGATGTTGTGTTGGGTAACCTAGTTGATGTTGGGGATGTTGAGAGGGGGTCGGAGGCTGGGATGGGTAAGGAATTGGTGGTGGAGGAGGCTGAGGATGAGTTTACCCCTTTGACTAGGCATAGAAGGGAGGCAGTAGTGAGATCTAATCAGAAGGGTGGTCTGGGGATGGTGGTTCACAACTCCTTTGAGACTCCGCAGGGATGGGTGAGGACTCCTTGGTGTTGGCATTGGTCGATGATAGGAGATGGTGGTCTTAATGATCCCATGAAATGTAGAGCTGTGCATGAGTTTTTGCAGTTTTCTTTTGTTGAGGTGTGTTATCTTGTGGAGACTAGAGTGCAACAGGAGAATTTTGATTCAGTTGTGGCTAGATTTGGGATGAAATGGGGAAGTGTGTGTAGATATAGTGTTGCGGGTGTGAGGCGGAACTGGGTGTTGTGGAATGCCTCTCTGTATGACTTTAGGCCTGGTGTTGTGGAGGATCATGTGAGACCCGAAATTCTGACCTAG

Protein sequence

MLQEDILFKFLLLPIICLSDVVLGNLVDVGDVERGSEAGMGKELVVEEAEDEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMIGDGGLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGSVCRYSVAGVRRNWVLWNASLYDFRPGVVEDHVRPEILT
Homology
[Close]
BLAST of Cla006864 vs. NCBI nr
Match: gi|659102432|ref|XP_008452126.1| (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 8.9e-08
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1 

Query: 108 MKCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGSVCRYSVAGVRRNWVLWN 167
           +K +AV +FL  S V  C  +ETRV++ NFDSV  RFG  W   C YS +GV R WV+W 
Sbjct: 38  LKSKAVVDFLGSSSVGFCCHLETRVREGNFDSVSRRFGNSWDYSCSYSNSGVGRIWVMWK 97

Query: 168 ASLYDFRPGVVEDHVRPE 186
            + + F       HVR E
Sbjct: 98  KNRFSF-----STHVRDE 110

The following BLAST results are available for this feature:
BLAST of Cla006864 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102432|ref|XP_008452126.1|8.9e-0844.87PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006864Cla006864.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006864Cla97C04G070550Watermelon (97103) v2wmwmbB296
Cla006864ClCG04G003490Watermelon (Charleston Gray)wcgwmB261
Cla006864CSPI04G16910Wild cucumber (PI 183967)cpiwmB351
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006864Cucurbita maxima (Rimu)cmawmB635
Cla006864Cucurbita maxima (Rimu)cmawmB838
Cla006864Cucurbita moschata (Rifu)cmowmB625
Cla006864Cucurbita moschata (Rifu)cmowmB827
Cla006864Melon (DHL92) v3.5.1mewmB580
Cla006864Cucurbita pepo (Zucchini)cpewmB087
Cla006864Cucurbita pepo (Zucchini)cpewmB488