Cla006847 (gene) Watermelon (97103) v1

Overview
NameCla006847
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1); contains Interpro domain(s) IPR019186 Nucleolar protein 12
LocationChr4 : 10205343 .. 10211318 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGAATGACGGAGAAGAAGGGGGCGAGATCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTAAGGTTTTCCTTCGAACTAAGCATGAAGTTGATTAATGGGTTAATTTGGACTTTTGTTTGATTTCGATTTCTTCTATCTGTTTTCCTCATGTGGTTAATTGTTGTTTTTATTAGGGATTATGTGACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGGTTTGGAAACCTTTTCTATTTTTGGGAACGAATTGCTGAAAACATAGCTACAGTGAGAGTTTCGGACTTGCCTGTCAATAATACGATTTTTCTAGCATTCAATGAGCATAGGACAGCGCATGAAGGAATTTTTTTCCGGTAGATTGTTGATTTCCCAACAGAACTGCAGAACCATTTGGGTTCTCAGAAGGTAGAAAGAGAACCAGAAACCATTACTTTGATGAAATGTTAAAATTTCCTGCGGACTCTGGAGATAAGGCTGGCTGTAATCTAGAGATGCCATTGCTGTTCTTCCACCTTGGATTTATCCAAGGTTATATGATTTTTTTTTTTTTTCAATCCTTAGTTCCAGAGGGCTGTTAGGTTTCAGACCTGCAAATATCAAACCTAACAAAGAATCCCCCAAACCAAACAGAGATATCTTCTCTTTTTTGTCAGCCTAAACGAGATCAAAACAAAATTTCTCAGAATGAAAACATAACAAGTACAATAACCAAAAGTGTTTCCTAGGTTATACCACTTGTCCTCTTTGAAAGACTGTTTCGTGTCGGACGTGTGGTTTGGTTGGAGAATTCTGCTTCCTTCTCCTTTTGCTTCCGCCAGGCATTGTCCAATAGGGAAACGACGGAGGTGGTCTTTCTTCTTTCCTTGATTGAGGGTTTTGACTTTAGAGTGGGGAGAAAGGATGTTCGTGTTTGGAGTCCTGATTCGATGGGGGGCTTTTCTTGTAAGTCGTTATTTAGGATTCTTGTGAATCCTTCTCCTGTAGTCGAGTCAGTCTTTGATGTTTTATGGAGGATTAAGATTCCTAAGAAAGTCAAATTCTTTGTCTGGCTAGTGTTGTATTGCTTGGTCGTGTGAATACGGTGGATAAGATTTTGAGAAAGATGCTTTCGTTAATAGGTCCTTTTTGTTGCATTCCTTGTCGAAAGGTGGAGGAAAATTTGGATCAACTTCTCTGGAAATGCCAATATGCGAGATCTGTTTGGATCTTATTCTTACAGGAGTTTGATTTCTCGTTCGTTGGCAGAGGGACATTTGGTTGCTAATCAGGGAGATCCTTCTCCATCCGCCCTTCAAAGAGAAAGGGTGTTTTCTTTGGCTTGTAGGGGCCTATGCTTTGTTGTGAGATTTGTGGGTGAGAGAAACAATAGAGTGTTTAGGGGTATGGAGAAGAACCCTAGTGAGATTTGGTCTTTGGTGAGATTTCATGTTTCTCTTTAGGCTTCGATTTCGAAGTCTTTTTGTAATTACACTCTAGGCAATATCTTACCTAGTTTGAAGCGCTTTCTTAGTAGGTTTTTTGTGGGTTGTTTTTCTTTTTTTCTTTTTTATTTTTTTTATTTTTTATGCCATTGTATTCTTTCCTTTTTTTTTTTCGCAATGAAAGCAGTTGTTTGTATATAAAAAGAAGAAAAATAACCAAAAGTGAAAGATAACTCCCCAGCACAATTCGAGACAGTTGGAATTCCCTCCTTCAACCTTCAACTTCAGAATCACCAAGTTTTCCCTCCCTTCTACAAGACCCCCAAAGCCTCTCTTAGACCTCCATGGTGGTCCCTTGGTGGTCCCCATCCTCTAACCGAATTCGTTCCACGTCCCACTTTCTTTTCCCCCTTGTAGAACTCCCTTCTTACCCTTGCGATAATAAGTTTAACGAATTGAGGGTCTCACATGGTCACATCGGGTATTTAGGAGACTTCAGTTGTCTCTCTTTCCTGGAGCTACAGGGAATGATTTTTGAACTTAGTTGTACATTCATCAAGACGACAAAGTTAGAAGGTGTGCTTCTGTAACTTCTTTTTTAAAAATAGTAAGTCGAGCTTCAATTAGAAAAAAAGTTGAAAGAATGTATAACGACATACATTGGTACAAGAAATAGCACCAATCCAAAAGAATGAAACCCAACTGAAAATTACAAAAAGCCTTAACCATGGAAGCTCATTACGAAGCATTGGACCTACTAAGCTCTCACAACTCATGACCTTACTTGAACAATATTTGTTCTATAGGTTGTACAACTGTGCCCTTGAGTTCTAAAGAAAATAACCTCCTGCAACTCCCTCTTAGATCTCTCAACACCTTCAAAAAGTCTACCATTCCTCTCAAGCCATATTCCCTAAAGAATGACGAAGAAAGATGCTTGCCAAAGAATTTAACCCATCTCCTTGTAAGGCAGAAACAACAAAAACTCCTCCATCAAAGCCCTTCAATCCCAATTTGTTTCTTCACTTAAGCTCTGAGAAAAATGTTACGGCTTTAAGATTTTGGTCATACTACTGCAAATGATGCAAATGATGGTAAGGGAGGGTGAGGCAAAGGCGATTTAAGTTGTGAGAACTTGCCTTAAAGCTTTTTTGTTTCTGTTAATTTTGGGGAAAATTGCAAAAACCACCCCTGAACAATGAGGTTGGTTATAATCACACCCATGAACTTTCAATTTGATCAATCATCCTCTTGGAGTTTCTTAATGGTTGCAATCAACTCCTTTTATTAAATTAATTTTTATTTATAATTTCTTCTTCCTCTCTTTGGTTCTCTCTCCTCTCTTTTCATCATCTTTCATTCTCAACTCTAAAAGTGAAGCCTTAGTTTCATGGACCCATTGCTCTCCAAGAAATCATGGGATATCTTAACCCTCTTCTCTCCATTCACACGCACATTTGATGTTGTACCATTGGTAGCTATTTCTATGTTAAAACGAAGACGTTCTCTAGAAAATTGGGTGGTTCATTTTGGAATGAAAAAGGGTTTAACTTAGTAGATGAAAACCCTTCACCTTGATTCCTCTTTGCCTTAGTGTACAGAGAAGGCAATCAGAGCACTGCGCTTAAAGGTGAAGCAACCATAGTCCCGACCCTTTTGCTGACGGAAGAAAGCTGAAATTCTTTGAATTGGGATTATTGGTAAGTTCGTTTTACTTTTTCTCTATTTTCATTTGTTGCATTGCAACAATTCTTAGAAATTTAGCAATCTTCTTGTGTTGAATTTGTGTACGAAACTGATTCGTCGGTTCACCAAATTCTATTTGGATGGCTAAGTAATTCAAAAACTTAAGCTGGGCAAGATTTTTCGATCGAAGTTATAGAATTTTTGCTCCAAAGTTTTCTCATATTTCCCAATCGCTCAATTGGTGGGCATAATACTGTGGTAATGTGACAGAGAGAGATGAGACATTCTAACAGTAAATCTCTGTAGCTAGAGGAGAGACAACAGATGAGAATAACAGAGGATGAAAAGGGAGAAGAGAGAACAAAAGAGAGGAAGGAGAAACTACAAATATCCAAAAAAAAGAAAAAGATTAAATTAATAAATGGGGTTGATTGCAACCATTAAGAACCACAAGGGCATAATTGATCAAATTGAAAGCTCATGGGTGTAATTGTTAGCAACCTCATAGTTTAGGAGTGGTTTTTGCAATTTTTCCTTAATTTTAATAGTGAATTCCCCCAAGATTTTTTTTTGTTTATTTATTTTTTAAAAATTTCTTTTCTTGATTTTTCCTTTTTATTTTGTGGGAGGGAGCTCGATAAGAAACCCATCAACTGTCATGACAAGCTTCAAAAGAATGCCTTACATGGTTTCGTCTCCTCGTTGTGCTCTATTTGCAAACAATTAGAAGCACAAAGTCACCTTATGATATCTTGTACATACGCCAGCTCCTTTTGGAACCACCTTACATTGTTTTGTCTCCTCATTTGTGCTCTATTTGCAAACAACAATTAAAATCACAAAATCACCTTATGGTATCTTGTACGTACACTAGCTTCTTTCGGAACCATCTCCTTTCAACATTTAGTTAGAACACGACTCTCCTGGAAGATCCTGAATCTCTCCTATCCCATGCCTTTGGAGGGCACCTTTTCCAAAAGGAAAATAAGCTTCTTTGGAAAAGTTTCATTACAGCATTCTGTTGGAACATTTGACTCCAAGAAAGGAATAGAAGAATCTTCCATGAAAAAGGGCTCTCTTGTTATAGATTTTGTGATGCTATCTTTAACCCCGTTGTGACTTAGTGTAAATGCTCCCCTTATTCTATCACTATACCTATACATCTTATACTAGTGTATAACCTGGAAAGTCTTCTGGAATGATATTGTATTGGGGCTTACCCTCTTCTTTTGTAATTTCATACATCGATCAAATTGTTTCTGATAAAAAAATAAAAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGATTGTATATATAATAATCTGTTAGGGTGAGTAGATTGTTGAGTTTTTGGCAAAATATTAGAAGTGCAGTTGTCTCACATTGGAAAAACTCAAGGAAGTGATGAGCTCCATGCACTATAAAAGGATCTTATGCCTTTGGTTTTAAGTCGTCCTAGTTAGAAACACTTTAAGTTTAGGTGTGCTATAACTCTAGTTAAATTTCCTTTCATATTTGAGAGTGGATTAAAGAGTGTGATTGATACAAAAGTTTTGAGAGAGTACTCTTGTAATTGGATTGAGAGAGAATTATTCTGTGTGATAGTAATAATTTTTCATATAATGGATTTTATTTGGTCCGTGGTTTTTTCTCCGGTTTGGAGTTTTTCCATGTTAATTTTTGTGTTTCTAGTTTTATTGTTTTCTTTTAATTTCTTTGTTATTTTTCAGCTTATTCTTGCTAGTGGGAGATTTTTCTCCAACCCATATATCTAATCATCCTTAAAAATGCTACAAATTAGTCATATTGTATGTATTGTATTATATGAAGACTTTTATTGGACAAGTTGTGTAAAATTTTATTGATTAGTGGAAACAAGGAAGAGAACAGCCTGTGCATATATCTTTTTCTTCTATATTATTGGGATATGTTCTCAAGAGTCAAAGTCCTAAATTATTATCTTGCAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGACCGGTTGATGAACAGAATGAGGATCATGAGGATGAGGATGACGAAGAGGAAGAGAAGCCATTGGCACGACTTTCTGGTACTTTACAGACGATTGCATATTAAAATATTAAGTGCGTTTGATAAGCCATTTGCACCAGCTTGCTTAGACCACAGATCTGTTCAATCAATTCTAATGACATATTAATTACAAGTTCTTCTCCAATACAAGTGTAAAAACAAAGTATCCATCTAAAAAAATCAGATCAGATATTATTTATGTTCATAGGGAAGCTAAAAGTCAGGTTTATATGAAAAATAAGTGGCAAGTTGATAAAATTGATAATGGATATGCATTCTTTTAGAAGAACAAGAATCTTCATTTCTATATACTCCAGAACTTGGAACAGTATTTTGATAATTTATTACTGGAAGTGTCATTTATGTTCCAGAGCAGATAAATGTTGCCTAATTTTGATCCAAACATACTTTTGTTTTCCTCTGTAGAGACAACAATGTATGACAGCGGGAATATCAAAATCACTGTGACAACAAGTGAGGTATCTCGAGAAGAAGAAATCGATCTCATTGAGAAGCCACAGACAGCAACAACCCAATTGTTTGCAAAGGATAAGAAGCATAACCTGCCAATTGCCAAAAAGAAGCCATTCAAGAAAGTTTCAAAGCAGAGGTCAAGGCCAAAGCCTCAAAGTAAGAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

mRNA sequence

ATGGTGAAGAATGACGGAGAAGAAGGGGGCGAGATCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTAAGGGATTATGTGACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGACCGGTTGATGAACAGAATGAGGATCATGAGGATGAGGATGACGAAGAGGAAGAGAAGCCATTGGCACGACTTTCTGAGACAACAATGTATGACAGCGGGAATATCAAAATCACTGTGACAACAAGTGAGGTATCTCGAGAAGAAGAAATCGATCTCATTGAGAAGCCACAGACAGCAACAACCCAATTGTTTGCAAAGGATAAGAAGCATAACCTGCCAATTGCCAAAAAGAAGCCATTCAAGAAAGTTTCAAAGCAGAGGTCAAGGCCAAAGCCTCAAAGTAAGAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

Coding sequence (CDS)

ATGGTGAAGAATGACGGAGAAGAAGGGGGCGAGATCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTAAGGGATTATGTGACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGACCGGTTGATGAACAGAATGAGGATCATGAGGATGAGGATGACGAAGAGGAAGAGAAGCCATTGGCACGACTTTCTGAGACAACAATGTATGACAGCGGGAATATCAAAATCACTGTGACAACAAGTGAGGTATCTCGAGAAGAAGAAATCGATCTCATTGAGAAGCCACAGACAGCAACAACCCAATTGTTTGCAAAGGATAAGAAGCATAACCTGCCAATTGCCAAAAAGAAGCCATTCAAGAAAGTTTCAAAGCAGAGGTCAAGGCCAAAGCCTCAAAGTAAGAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

Protein sequence

MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSKRDKKKGRKKK
Homology
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BLAST of Cla006847 vs. Swiss-Prot
Match: RRP17_SCHPO (Ribosomal RNA-processing protein 17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp17 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.2e-12
Identity = 63/204 (30.88%), Postives = 97/204 (47.55%), Query Frame = 1 

Query: 9   GGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRK 68
           GGEI      + +K+  + +   + F+++  ++Y+TGFHKRK +RRK A+ Q E+  R +
Sbjct: 10  GGEI------YSRKKGKKQRLEEIVFDKEKRKEYLTGFHKRKVERRKHAQVQLEQQKREE 69

Query: 69  RIEARK------KRKLEKDLVLYGGVLPADRPVDE---QNEDHEDEDDEEEEKPLARLSE 128
           R+  RK      KR+L + L  +   L +    DE   Q ED   + D EEE  +    +
Sbjct: 70  RLALRKSLREQRKRELAERLA-FSKELNSSLENDEESSQQEDSSSKSDSEEESSME--PK 129

Query: 129 TTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKD----KKHNLPIAKKKPFK- 188
           TT YD  +  +TV   E   +EEI    K    T ++        + H    A KK F+ 
Sbjct: 130 TTEYDEDDKHVTVEIVEDDDDEEI-AYPKEGFVTPRISPPPDVPLRPHKPKNAAKKKFRY 189

Query: 189 --KVSKQRSRPKPQSKRDKKKGRK 197
             K  + + R K + +R KKK R+
Sbjct: 190 ESKFERTQDRRKEKIRRLKKKIRR 203

[Close]
BLAST of Cla006847 vs. Swiss-Prot
Match: NOL12_RAT (Nucleolar protein 12 OS=Rattus norvegicus GN=Nol12 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.2e-08
Identity = 52/207 (25.12%), Postives = 92/207 (44.44%), Query Frame = 1 

Query: 26  RNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLY 85
           R   L ++F+E+  R+Y+TGFHKRK +R+K A ++ ++ +++++ + R++R  E   +L 
Sbjct: 14  RRPRLILNFDEEKRREYLTGFHKRKVERKKAAIEEIKQRLKQEQKKLREERHQEYLKML- 73

Query: 86  GGVLPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTT----------- 145
                       + E+  +E DE E    A+ +E+  YD  N  +TVTT           
Sbjct: 74  -----------AEREEALEEADELERLVTAK-TESVQYDHPNHTVTVTTVSDLDLSGARL 133

Query: 146 ----------SEVSREEEIDLIEKPQTA-------------TTQLFAKDKKHNLPIAKKK 199
                      + S+EEE+  +EKP  A              + L A    H+    K+K
Sbjct: 134 LGLPLPEQGDQDGSQEEEVSSMEKPTKALPKKSKDPLLSQRISSLTATLHAHSRKKVKRK 193

[Close]
BLAST of Cla006847 vs. Swiss-Prot
Match: NOL12_MOUSE (Nucleolar protein 12 OS=Mus musculus GN=Nol12 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.5e-08
Identity = 52/207 (25.12%), Postives = 92/207 (44.44%), Query Frame = 1 

Query: 26  RNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLY 85
           R   L ++F+E+  R+Y+TGFHKRK +R+K A ++ ++ +++++ + R++R  E   +L 
Sbjct: 15  RRPRLVLNFDEEKRREYLTGFHKRKVERKKAAIEEIKQRLKQEQKKLREERHQEYLKML- 74

Query: 86  GGVLPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTT----------- 145
                       + E+  +E DE E    A+ +E+  YD  N  +TVTT           
Sbjct: 75  -----------AEREEALEEADELERLVTAK-TESVQYDHPNHTVTVTTISDLDLSGARL 134

Query: 146 ----------SEVSREEEIDLIEKPQTA-------------TTQLFAKDKKHNLPIAKKK 199
                      + S+EEE+  +EKP  A              + L A    H+    K+K
Sbjct: 135 LGLPLPEQGDQDGSQEEEMSSLEKPTKALPRKSKDPLLSQRISSLTATLHAHSRKKVKRK 194

[Close]
BLAST of Cla006847 vs. Swiss-Prot
Match: NOL12_BOVIN (Nucleolar protein 12 OS=Bos taurus GN=NOL12 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.1e-08
Identity = 52/205 (25.37%), Postives = 89/205 (43.41%), Query Frame = 1 

Query: 26  RNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLY 85
           R + L +SF+E+  R+Y+TGFHKRK +R+K A ++ ++ ++ ++ + R++R  E   +L 
Sbjct: 13  RRQRLILSFDEEKRREYLTGFHKRKVERKKAAIEEIKQRLKEEQKKLREERHQEYLKML- 72

Query: 86  GGVLPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTT----------- 145
                       + E+  +E DE +    A+ +E+  YD  N  +TVTT           
Sbjct: 73  -----------AEREEALEEADELDRLVTAK-TESVQYDHPNHTVTVTTISDLDLSGARL 132

Query: 146 ---------SEVSREEEIDLIEKPQTA-------------TTQLFAKDKKHNLPIAKKKP 198
                    +    EEE+  +EKP  A              + L A    H+    KKK 
Sbjct: 133 LGLPTPEQGAGSGPEEEVSSMEKPTRALPRKSRDPLLSQRISSLTASLHAHSRKKVKKKR 192

[Close]
BLAST of Cla006847 vs. Swiss-Prot
Match: NOL12_DANRE (Nucleolar protein 12 OS=Danio rerio GN=nol12 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.1e-07
Identity = 45/165 (27.27%), Postives = 71/165 (43.03%), Query Frame = 1 

Query: 34  FNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADR 93
           F++KD +D++TGFHKRK +RR+ A ++ +  ++ ++   R++R  E   +L         
Sbjct: 28  FDDKDRQDFLTGFHKRKLERRRAALEEMKSKLKEEQKRLREERHKEYLKML--------- 87

Query: 94  PVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTAT 153
              ++     DE DE EE  +   +E   YD  N  +TVTT          L+E  Q   
Sbjct: 88  ---QERRQALDEADELEE-AITATTECVQYDHPNHTVTVTTISDLDLSADRLLEPAQRDG 147

Query: 154 TQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSKRDKKKGRKKK 199
                +++   LP     P      Q       S   +KK RK+K
Sbjct: 148 GDGEERERTEALPKQAGNPLLSKKIQSLTASLNSLVKQKKRRKQK 179

[Close]
BLAST of Cla006847 vs. TrEMBL
Match: A0A0A0KYB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G414400 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.5e-84
Identity = 165/200 (82.50%), Postives = 178/200 (89.00%), Query Frame = 1 

Query: 1   MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNDGEEGGE+AQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDEEEEKPLARLSET 120
           +EEAMRR RIEARKKRKLEKDLVL+GGVLPADR VD+QN    D+   EEE+PLA LSE 
Sbjct: 61  KEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQN----DDQGNEEEEPLAPLSEA 120

Query: 121 TMYDSGNIKITVTTSEVSREEEIDLIEKPQTA--TTQLFAKDKKHNLPIAKKKPFKKVSK 180
           T YD+GN+K+TVTTSEVSRE+EID I+KPQTA  T QL  KDKKHNLPI KKK FKKV+K
Sbjct: 121 TTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAK 180

Query: 181 QRSRPKPQSKRDKKKGRKKK 199
           QR RPK +SKRDKKKGRKKK
Sbjct: 181 QRGRPKLRSKRDKKKGRKKK 196

[Close]
BLAST of Cla006847 vs. TrEMBL
Match: A0A067GK09_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029079mg PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-55
Identity = 118/192 (61.46%), Postives = 146/192 (76.04%), Query Frame = 1 

Query: 7   EEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMR 66
           EE  ++ +   RHIKKRAL+NKALSVSF+EKDL+DYVTGFHKRKKKRRKEAEK QEEA R
Sbjct: 7   EETLQVPKVRGRHIKKRALKNKALSVSFDEKDLKDYVTGFHKRKKKRRKEAEKNQEEAQR 66

Query: 67  RKRIEARKKRKLEKDLVLYGGV-LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDS 126
           RKR+E RKKR+LE+++VLYGG   PAD   DE  E  E   D+EE +P+  ++ TTMYD+
Sbjct: 67  RKRLEERKKRRLEREIVLYGGAPTPADSAPDEGEEYCE---DDEEREPVVPITGTTMYDN 126

Query: 127 GNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKP 186
           G++K+TVTTSE+S E E    EK   A       DKKH +P++K K FKKV+KQ+SR KP
Sbjct: 127 GDLKVTVTTSEISHEAENLPSEKTPAAVPHFIGVDKKHQIPVSKCKSFKKVAKQKSR-KP 186

Query: 187 QSKRDKKKGRKK 198
           QSKR+KKKG+KK
Sbjct: 187 QSKRNKKKGKKK 194

[Close]
BLAST of Cla006847 vs. TrEMBL
Match: M5X2I3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011686mg PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 7.1e-55
Identity = 112/183 (61.20%), Postives = 142/183 (77.60%), Query Frame = 1 

Query: 15  PHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARK 74
           P  RHIKKRAL+NKAL+V+FNEKDL D+V+GFHKRKKKRRKEAEK+QEEA+RRKR+E RK
Sbjct: 15  PRGRHIKKRALKNKALAVTFNEKDLSDFVSGFHKRKKKRRKEAEKKQEEALRRKRLELRK 74

Query: 75  KRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTT 134
           KR+LEK+L L     PA     +++++H DEDDE  E P   +S TT YD+G++K+TVTT
Sbjct: 75  KRRLEKELALNDDAPPATDTAADESDEH-DEDDESSE-PALPVSGTTTYDNGDMKVTVTT 134

Query: 135 SEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSKRDKKKG 194
           SE+SREEE D  EK + A  Q     KKHN+P++K KP KKV+K++SRPK Q KRDK+KG
Sbjct: 135 SEISREEESDSDEKTEAAIPQSVGASKKHNVPVSKTKPLKKVAKRKSRPKLQRKRDKRKG 194

Query: 195 RKK 198
            +K
Sbjct: 195 PEK 195

[Close]
BLAST of Cla006847 vs. TrEMBL
Match: F6H7U1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0181g00240 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 7.1e-55
Identity = 118/193 (61.14%), Postives = 145/193 (75.13%), Query Frame = 1 

Query: 7   EEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMR 66
           EEGG+   PHA+HIKKRALRNKALSVSFNEKDLRD+V GFHKRKKKRRKEA+++ +E+ R
Sbjct: 7   EEGGQPRPPHAKHIKKRALRNKALSVSFNEKDLRDFVGGFHKRKKKRRKEAQQKLQESQR 66

Query: 67  RKRIEARKKRKLEKDLVLYGGVLPA-DRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDS 126
            KRI  RKKRKLE++LV YGG   A     DE +++HE  D  +E  P+A +S TTMYD+
Sbjct: 67  IKRIVERKKRKLERELVQYGGAPTATGSEPDECDDEHEQHDGVDE--PIASVSGTTMYDN 126

Query: 127 GNIKITVTTSEVSREEEIDLIEKPQ-TATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPK 186
           G+ K+ VTTSE+SREEE  L EK Q  A   +    KKHN+P++KKK FK+V + RS+PK
Sbjct: 127 GDTKVIVTTSEISREEENHLTEKTQGAAPPAIVGSKKKHNVPVSKKKAFKRVVRHRSQPK 186

Query: 187 PQSKRDKKKGRKK 198
            Q KRDKKKG KK
Sbjct: 187 LQRKRDKKKGGKK 197

[Close]
BLAST of Cla006847 vs. TrEMBL
Match: V4TPL5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016776mg PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.7e-54
Identity = 114/192 (59.38%), Postives = 146/192 (76.04%), Query Frame = 1 

Query: 7   EEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMR 66
           EE  ++ +   RHIKKRAL+NKALSVSF+EKDL+DYVTGFHKRKKKRRKEAEK QEEA R
Sbjct: 7   EETLQVPKVRGRHIKKRALKNKALSVSFDEKDLKDYVTGFHKRKKKRRKEAEKNQEEAQR 66

Query: 67  RKRIEARKKRKLEKDLVLYGGVLPADRPVDE-QNEDHEDEDDEEEEKPLARLSETTMYDS 126
           RKR+E RKKR+LE+++VLYGG   A  P D   +E  E  +D+EE +P+  ++ TTMYD+
Sbjct: 67  RKRLEERKKRRLEREIVLYGG---APTPTDSAPDEGEEYSEDDEEREPVTPITGTTMYDN 126

Query: 127 GNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKP 186
           G++K+TVTTSE+SRE E    E+   A       DKKH++P++K K FKKV+KQ+SR KP
Sbjct: 127 GDLKVTVTTSEISREAENLPTEETPAAVPHFIGVDKKHHIPVSKCKSFKKVAKQKSR-KP 186

Query: 187 QSKRDKKKGRKK 198
           Q KR+K KG+KK
Sbjct: 187 QRKRNKMKGKKK 194

[Close]
BLAST of Cla006847 vs. NCBI nr
Match: gi|659111551|ref|XP_008455785.1| (PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo])

HSP 1 Score: 324.7 bits (831), Expect = 1.1e-85
Identity = 165/198 (83.33%), Postives = 177/198 (89.39%), Query Frame = 1 

Query: 1   MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNDGEEGGE+AQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDEEEEKPLARLSET 120
           +EEAMRR RIEARKKRKLEKDLVLYGGVLPADR VD+QN+D ED    EEE+PLA  SE 
Sbjct: 61  KEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDDQED----EEEEPLAPFSEA 120

Query: 121 TMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQR 180
             YD+GN+K+TVTTSEVSRE EID I+KPQTA  QL  KDKKHNLPI KKK FKKV+KQR
Sbjct: 121 RTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQR 180

Query: 181 SRPKPQSKRDKKKGRKKK 199
           SRPK +SKRDKKKGRKKK
Sbjct: 181 SRPKLRSKRDKKKGRKKK 194

[Close]
BLAST of Cla006847 vs. NCBI nr
Match: gi|778694579|ref|XP_011653832.1| (PREDICTED: ribosomal RNA-processing protein 17 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 2.1e-84
Identity = 165/200 (82.50%), Postives = 178/200 (89.00%), Query Frame = 1 

Query: 1   MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNDGEEGGE+AQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDEEEEKPLARLSET 120
           +EEAMRR RIEARKKRKLEKDLVL+GGVLPADR VD+QN    D+   EEE+PLA LSE 
Sbjct: 61  KEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQN----DDQGNEEEEPLAPLSEA 120

Query: 121 TMYDSGNIKITVTTSEVSREEEIDLIEKPQTA--TTQLFAKDKKHNLPIAKKKPFKKVSK 180
           T YD+GN+K+TVTTSEVSRE+EID I+KPQTA  T QL  KDKKHNLPI KKK FKKV+K
Sbjct: 121 TTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAK 180

Query: 181 QRSRPKPQSKRDKKKGRKKK 199
           QR RPK +SKRDKKKGRKKK
Sbjct: 181 QRGRPKLRSKRDKKKGRKKK 196

[Close]
BLAST of Cla006847 vs. NCBI nr
Match: gi|743914398|ref|XP_011001127.1| (PREDICTED: ribosomal RNA-processing protein 17-like [Populus euphratica])

HSP 1 Score: 224.2 bits (570), Expect = 2.1e-55
Identity = 119/193 (61.66%), Postives = 142/193 (73.58%), Query Frame = 1 

Query: 7   EEGGEIAQPHAR--HIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA 66
           E+ G I  P  R  HIKKRAL+NKA+SVSFNEKDLRDYVTGFHKRKKKRRKEA KQQEE 
Sbjct: 6   EDNGAIQIPPTRAGHIKKRALKNKAVSVSFNEKDLRDYVTGFHKRKKKRRKEAIKQQEEK 65

Query: 67  MRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYD 126
           +R KRI ARK+RKLEK+L L GG  PA    DE  EDH      EE +P+A ++ TT YD
Sbjct: 66  LRLKRITARKQRKLEKELALRGGAPPATDESDEYEEDH------EESEPIASVNGTTKYD 125

Query: 127 SGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPK 186
           SG++++TVTTSE+SRE++    EK Q A   L   DK H L ++KKK FKKVSK++SR K
Sbjct: 126 SGDMQVTVTTSEISREDKDGSSEKTQAAVPSLVEADKTHKLSVSKKKSFKKVSKRKSRSK 185

Query: 187 PQSKRDKKKGRKK 198
           PQ KRD+KKG+ K
Sbjct: 186 PQKKRDRKKGKSK 192

[Close]
BLAST of Cla006847 vs. NCBI nr
Match: gi|641856971|gb|KDO75737.1| (hypothetical protein CISIN_1g029079mg [Citrus sinensis])

HSP 1 Score: 223.8 bits (569), Expect = 2.7e-55
Identity = 118/192 (61.46%), Postives = 146/192 (76.04%), Query Frame = 1 

Query: 7   EEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMR 66
           EE  ++ +   RHIKKRAL+NKALSVSF+EKDL+DYVTGFHKRKKKRRKEAEK QEEA R
Sbjct: 7   EETLQVPKVRGRHIKKRALKNKALSVSFDEKDLKDYVTGFHKRKKKRRKEAEKNQEEAQR 66

Query: 67  RKRIEARKKRKLEKDLVLYGGV-LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDS 126
           RKR+E RKKR+LE+++VLYGG   PAD   DE  E  E   D+EE +P+  ++ TTMYD+
Sbjct: 67  RKRLEERKKRRLEREIVLYGGAPTPADSAPDEGEEYCE---DDEEREPVVPITGTTMYDN 126

Query: 127 GNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKP 186
           G++K+TVTTSE+S E E    EK   A       DKKH +P++K K FKKV+KQ+SR KP
Sbjct: 127 GDLKVTVTTSEISHEAENLPSEKTPAAVPHFIGVDKKHQIPVSKCKSFKKVAKQKSR-KP 186

Query: 187 QSKRDKKKGRKK 198
           QSKR+KKKG+KK
Sbjct: 187 QSKRNKKKGKKK 194

[Close]
BLAST of Cla006847 vs. NCBI nr
Match: gi|595874053|ref|XP_007212076.1| (hypothetical protein PRUPE_ppa011686mg [Prunus persica])

HSP 1 Score: 221.9 bits (564), Expect = 1.0e-54
Identity = 112/183 (61.20%), Postives = 142/183 (77.60%), Query Frame = 1 

Query: 15  PHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARK 74
           P  RHIKKRAL+NKAL+V+FNEKDL D+V+GFHKRKKKRRKEAEK+QEEA+RRKR+E RK
Sbjct: 15  PRGRHIKKRALKNKALAVTFNEKDLSDFVSGFHKRKKKRRKEAEKKQEEALRRKRLELRK 74

Query: 75  KRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTT 134
           KR+LEK+L L     PA     +++++H DEDDE  E P   +S TT YD+G++K+TVTT
Sbjct: 75  KRRLEKELALNDDAPPATDTAADESDEH-DEDDESSE-PALPVSGTTTYDNGDMKVTVTT 134

Query: 135 SEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSKRDKKKG 194
           SE+SREEE D  EK + A  Q     KKHN+P++K KP KKV+K++SRPK Q KRDK+KG
Sbjct: 135 SEISREEESDSDEKTEAAIPQSVGASKKHNVPVSKTKPLKKVAKRKSRPKLQRKRDKRKG 194

Query: 195 RKK 198
            +K
Sbjct: 195 PEK 195

The following BLAST results are available for this feature:
BLAST of Cla006847 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RRP17_SCHPO6.2e-1230.88Ribosomal RNA-processing protein 17 OS=Schizosaccharomyces pombe (strain 972 / A... [more]
NOL12_RAT4.2e-0825.12Nucleolar protein 12 OS=Rattus norvegicus GN=Nol12 PE=2 SV=1[more]
NOL12_MOUSE5.5e-0825.12Nucleolar protein 12 OS=Mus musculus GN=Nol12 PE=1 SV=1[more]
NOL12_BOVIN7.1e-0825.37Nucleolar protein 12 OS=Bos taurus GN=NOL12 PE=2 SV=1[more]
NOL12_DANRE6.1e-0727.27Nucleolar protein 12 OS=Danio rerio GN=nol12 PE=2 SV=1[more]
BLAST of Cla006847 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYB4_CUCSA1.5e-8482.50Uncharacterized protein OS=Cucumis sativus GN=Csa_4G414400 PE=4 SV=1[more]
A0A067GK09_CITSI1.9e-5561.46Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029079mg PE=4 SV=1[more]
M5X2I3_PRUPE7.1e-5561.20Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011686mg PE=4 SV=1[more]
F6H7U1_VITVI7.1e-5561.14Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0181g00240 PE=4 SV=... [more]
V4TPL5_9ROSI2.7e-5459.38Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016776mg PE=4 SV=1[more]
BLAST of Cla006847 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111551|ref|XP_008455785.1|1.1e-8583.33PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo][more]
gi|778694579|ref|XP_011653832.1|2.1e-8482.50PREDICTED: ribosomal RNA-processing protein 17 [Cucumis sativus][more]
gi|743914398|ref|XP_011001127.1|2.1e-5561.66PREDICTED: ribosomal RNA-processing protein 17-like [Populus euphratica][more]
gi|641856971|gb|KDO75737.1|2.7e-5561.46hypothetical protein CISIN_1g029079mg [Citrus sinensis][more]
gi|595874053|ref|XP_007212076.1|1.0e-5461.20hypothetical protein PRUPE_ppa011686mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019186Nucleolar_protein_12
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051276 chromosome organization
biological_process GO:0006310 DNA recombination
biological_process GO:0010467 gene expression
biological_process GO:0007127 meiosis I
biological_process GO:0045132 meiotic chromosome segregation
biological_process GO:0044710 single-organism metabolic process
biological_process GO:0007059 chromosome segregation
biological_process GO:0006259 DNA metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU05171watermelon EST collection version 2.0transcribed_cluster
WMU41853watermelon EST collection version 2.0transcribed_cluster
WMU44357watermelon EST collection version 2.0transcribed_cluster
WMU49556watermelon EST collection version 2.0transcribed_cluster
WMU66607watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006847Cla006847.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU41853WMU41853transcribed_cluster
WMU05171WMU05171transcribed_cluster
WMU66607WMU66607transcribed_cluster
WMU49556WMU49556transcribed_cluster
WMU44357WMU44357transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019186Nucleolar protein 12PANTHERPTHR14577UNCHARACTERIZEDcoord: 3..197
score: 9.0
IPR019186Nucleolar protein 12PFAMPF09805Nop25coord: 21..126
score: 3.2
NoneNo IPR availableunknownCoilCoilcoord: 47..75
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006847Cla97C04G070640Watermelon (97103) v2wmwmbB296
Cla006847ClCG04G003630Watermelon (Charleston Gray)wcgwmB261
Cla006847Lsi01G018360Bottle gourd (USVL1VR-Ls)lsiwmB148
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006847Wax gourdwgowmB452
Cla006847Cucurbita maxima (Rimu)cmawmB635
Cla006847Cucurbita maxima (Rimu)cmawmB838
Cla006847Cucurbita moschata (Rifu)cmowmB625
Cla006847Cucurbita moschata (Rifu)cmowmB827
Cla006847Cucurbita pepo (Zucchini)cpewmB087
Cla006847Cucurbita pepo (Zucchini)cpewmB488
Cla006847Silver-seed gourdcarwmB0470
Cla006847Silver-seed gourdcarwmB0521