Cla006833 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006833
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ty3-gypsy retrotransposon protein (AHRD V1 ***- E5GCP6_CUCME)
Location	Chr4 : 9775444 .. 9775773 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCAAGAAAGCTACATCCAAAACTCCTGCTGCAAACGGCACCTACACAGGACCTATCACCCGCAGTCGCTCAAAGGGGGTCATGCAAGAGAAGGAACAAGGTTCCGTTGTTGCAGAGAACATTTGGAAGCGGTTGACAGAATCTTCTAAAGGCAGGATTGTCATCAAAGAAAATCCTTTCTTCGACAGCTCTGCTCCTACTTCTAATCGCTCCAAGAAAGAATCACATCCTGATGTTATGTCTGTCATGATGGCTGATGTAACAGCAGAGGCAGCCATGGCAGAGATGGAGAGAAAAATAGAACTCCTAGTGAAAGTTGTCTAG

mRNA sequence

ATGGCCTCCAAGAAAGCTACATCCAAAACTCCTGCTGCAAACGGCACCTACACAGGACCTATCACCCGCAGTCGCTCAAAGGGGGTCATGCAAGAGAAGGAACAAGGTTCCGTTGTTGCAGAGAACATTTGGAAGCGGTTGACAGAATCTTCTAAAGGCAGGATTGTCATCAAAGAAAATCCTTTCTTCGACAGCTCTGCTCCTACTTCTAATCGCTCCAAGAAAGAATCACATCCTGATGTTATGTCTGTCATGATGGCTGATGTAACAGCAGAGGCAGCCATGGCAGAGATGGAGAGAAAAATAGAACTCCTAGTGAAAGTTGTCTAG

Coding sequence (CDS)

ATGGCCTCCAAGAAAGCTACATCCAAAACTCCTGCTGCAAACGGCACCTACACAGGACCTATCACCCGCAGTCGCTCAAAGGGGGTCATGCAAGAGAAGGAACAAGGTTCCGTTGTTGCAGAGAACATTTGGAAGCGGTTGACAGAATCTTCTAAAGGCAGGATTGTCATCAAAGAAAATCCTTTCTTCGACAGCTCTGCTCCTACTTCTAATCGCTCCAAGAAAGAATCACATCCTGATGTTATGTCTGTCATGATGGCTGATGTAACAGCAGAGGCAGCCATGGCAGAGATGGAGAGAAAAATAGAACTCCTAGTGAAAGTTGTCTAG

Protein sequence

MASKKATSKTPAANGTYTGPITRSRSKGVMQEKEQGSVVAENIWKRLTESSKGRIVIKENPFFDSSAPTSNRSKKESHPDVMSVMMADVTAEAAMAEMERKIELLVKVV

Homology

[Close]

BLAST of Cla006833 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.2e-23
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 1


Query: 1   MASKKATSKTPAANGTYTGPITRSRSKGVMQEKEQGSVVAENIWKRLTESSKGRIVIKEN 60
           MA +K  SK    N +YTG +T+S SK  +QE+EQ SV+ +  W++L ES KG I I+EN
Sbjct: 1   MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61  PFFDSSAPTSNRSKKESHPDVMSVMMADVTAEAAMAEMERKIELLVKVV 110
           P F++S P SN S KESH +V+SV+MA VTAE  M EMERKI  L+K V
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVIMAAVTAETTMVEMERKINFLMKAV 109

[Close]

BLAST of Cla006833 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-22
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 1   MASKKATSKTPAANGTYTGPITRSRSKGVMQEKEQGSVVAENIWKRLTESSKGRIVIKEN 60
           MA  K  SK    N TYT  I +S SK   Q++EQ SV+A+  W++L ES K  I+IKEN
Sbjct: 1   MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61  PFFDSSAPTSNRSKKESHPDVMSVMMADVTAEAAMAEMERKIELLVKVV 110
           P F+ S P SN S+KESH +V+S+MMADVT EA M EME KI  L+KVV
Sbjct: 61  PLFEDSTPASNLSEKESHLEVVSIMMADVTVEAVMVEMEMKINFLMKVV 109

[Close]

BLAST of Cla006833 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-20
Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 1


Query: 1   MASKKATSKTPAANGTYTGPITRSRSKGVMQEKEQ--GSVVAENIWKRLTESSKGRIVIK 60
           MA+ KA SK+  A+ +Y G +T+S  K  MQE+EQ  G V+ +   ++L ES KG I+I+
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  ENPFFDSSAPTSNRSKKESHPDVMSVMMADVTAEAAMAEMERKIELLVKVV 110
           +NP F++S P SN S K SH +V+SVMM DVTAEA + EMERKI  L+KV+
Sbjct: 61  DNPLFNNSTPASNLSDKASHLEVVSVMMVDVTAEATVTEMERKINFLMKVI 111

[Close]

BLAST of Cla006833 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 1


Query: 30  MQEKEQGSVVAENIWKRLTESSKGRIVIKENPFFDSSAPTSNRSKKESHPDVMSVMMADV 89
           MQE+EQG V+ +   ++L ES KG I+I++NP F++S PTSN S KESH +V+SVMM DV
Sbjct: 1   MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 90  TAEAAMAEMERKIELLVKVV 110
           TAEA MAEME+KI  L+KVV
Sbjct: 61  TAEATMAEMEKKINFLMKVV 80

[Close]

BLAST of Cla006833 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.5e-10
Identity = 45/112 (40.18%), Postives = 69/112 (61.61%), Query Frame = 1


Query: 1   MASKKATSKTPAANGTYTGPITRSRSKGVMQEKEQGSV-VAENIWKRLTESSKGRIVIKE 60
           M S+  TSK  +  G    P TRS S+ +   ++     VA+NIW+++++  KG I+IKE
Sbjct: 1   MTSQGNTSKALSDIGKR--PNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKE 60

Query: 61  NPFFDSSAPTSNRSKKES-HPDVMSVMMADV-TAEAAMAEMERKIELLVKVV 110
           NP  D     S  S +E+  P++MSVM+ DV T+EA M E+E+K+ +L+K V
Sbjct: 61  NPAIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAV 110

[Close]

BLAST of Cla006833 vs. NCBI nr
Match: gi|307136319|gb|ADN34142.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 115.2 bits (287), Expect = 7.4e-23
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 1


Query: 1   MASKKATSKTPAANGTYTGPITRSRSKGVMQEKEQGSVVAENIWKRLTESSKGRIVIKEN 60
           MA +K  SK    N +YTG +T+S SK  +QE+EQ SV+ +  W++L ES KG I I+EN
Sbjct: 1   MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61  PFFDSSAPTSNRSKKESHPDVMSVMMADVTAEAAMAEMERKIELLVKVV 110
           P F++S P SN S KESH +V+SV+MA VTAE  M EMERKI  L+K V
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVIMAAVTAETTMVEMERKINFLMKAV 109

[Close]

BLAST of Cla006833 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 112.8 bits (281), Expect = 3.7e-22
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 1   MASKKATSKTPAANGTYTGPITRSRSKGVMQEKEQGSVVAENIWKRLTESSKGRIVIKEN 60
           MA  K  SK    N TYT  I +S SK   Q++EQ SV+A+  W++L ES K  I+IKEN
Sbjct: 1   MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61  PFFDSSAPTSNRSKKESHPDVMSVMMADVTAEAAMAEMERKIELLVKVV 110
           P F+ S P SN S+KESH +V+S+MMADVT EA M EME KI  L+KVV
Sbjct: 61  PLFEDSTPASNLSEKESHLEVVSIMMADVTVEAVMVEMEMKINFLMKVV 109

[Close]

BLAST of Cla006833 vs. NCBI nr
Match: gi|659113191|ref|XP_008456446.1| (PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 9.0e-21
Identity = 54/90 (60.00%), Postives = 70/90 (77.78%), Query Frame = 1


Query: 1  MASKKATSKTPAANGTYTGPITRSRSKGVMQEKEQGSVVAENIWKRLTESSKGRIVIKEN 60
          MASKK  S +  A+  YTGPITRSRSKG++QE++Q S V ++I K+L ES K  IVIK+N
Sbjct: 1  MASKKVASNSYVASDAYTGPITRSRSKGIIQEQDQDSNVVQSILKQLMESPKAGIVIKKN 60

Query: 61 PFFDSSAPTSNRSKKESHPDVMSVMMADVT 91
          P +D+S   S+ SKK++HPDVMSVMMAD+T
Sbjct: 61 PLYDNSDLASSMSKKKAHPDVMSVMMADIT 90

[Close]

BLAST of Cla006833 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-20
Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 1


Query: 1   MASKKATSKTPAANGTYTGPITRSRSKGVMQEKEQ--GSVVAENIWKRLTESSKGRIVIK 60
           MA+ KA SK+  A+ +Y G +T+S  K  MQE+EQ  G V+ +   ++L ES KG I+I+
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  ENPFFDSSAPTSNRSKKESHPDVMSVMMADVTAEAAMAEMERKIELLVKVV 110
           +NP F++S P SN S K SH +V+SVMM DVTAEA + EMERKI  L+KV+
Sbjct: 61  DNPLFNNSTPASNLSDKASHLEVVSVMMVDVTAEATVTEMERKINFLMKVI 111

[Close]

BLAST of Cla006833 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-17
Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 1


Query: 30  MQEKEQGSVVAENIWKRLTESSKGRIVIKENPFFDSSAPTSNRSKKESHPDVMSVMMADV 89
           MQE+EQG V+ +   ++L ES KG I+I++NP F++S PTSN S KESH +V+SVMM DV
Sbjct: 1   MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 90  TAEAAMAEMERKIELLVKVV 110
           TAEA MAEME+KI  L+KVV
Sbjct: 61  TAEATMAEMEKKINFLMKVV 80

The following BLAST results are available for this feature:

BLAST of Cla006833 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCE3_CUCME	5.2e-23	54.13	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCM2_CUCME	2.6e-22	55.05	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCP6_CUCME	1.8e-20	51.35	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GB67_CUCME	1.9e-17	61.25	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB0_CUCME	6.5e-10	40.18	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla006833 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136319\|gb\|ADN34142.1\|	7.4e-23	54.13	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|307136413\|gb\|ADN34221.1\|	3.7e-22	55.05	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659113191\|ref\|XP_008456446.1\|	9.0e-21	60.00	PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo]	[more]
gi\|307136441\|gb\|ADN34247.1\|	2.6e-20	51.35	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307135838\|gb\|ADN33709.1\|	2.7e-17	61.25	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006833	Cla006833.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006833	Watermelon (97103) v2	wmwmbB296
Cla006833	Wax gourd	wgowmB452
Cla006833	Cucumber (Gy14) v1	cgywmB487
Cla006833	Cucurbita maxima (Rimu)	cmawmB635
Cla006833	Cucurbita maxima (Rimu)	cmawmB838
Cla006833	Cucurbita moschata (Rifu)	cmowmB625
Cla006833	Cucurbita moschata (Rifu)	cmowmB827
Cla006833	Melon (DHL92) v3.5.1	mewmB578
Cla006833	Watermelon (Charleston Gray)	wcgwmB261
Cla006833	Cucumber (Chinese Long) v2	cuwmB342
Cla006833	Cucumber (Chinese Long) v2	cuwmB345
Cla006833	Cucurbita pepo (Zucchini)	cpewmB087
Cla006833	Cucurbita pepo (Zucchini)	cpewmB488
Cla006833	Bottle gourd (USVL1VR-Ls)	lsiwmB157
Cla006833	Bottle gourd (USVL1VR-Ls)	lsiwmB148
Cla006833	Cucumber (Gy14) v2	cgybwmB319
Cla006833	Cucumber (Gy14) v2	cgybwmB321
Cla006833	Melon (DHL92) v3.6.1	medwmB567
Cla006833	Silver-seed gourd	carwmB0470
Cla006833	Silver-seed gourd	carwmB0521
Cla006833	Cucumber (Chinese Long) v3	cucwmB360
Cla006833	Cucumber (Chinese Long) v3	cucwmB361