Cla006774 (gene) Watermelon (97103) v1

Overview
NameCla006774
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptiontRNA-dihydrouridine synthase (AHRD V1 ***- D8S8E9_SELML); contains Interpro domain(s) IPR001269 tRNA-dihydrouridine synthase
LocationChr2 : 9041041 .. 9042396 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTGGTGCAGCTGGTGAAAAATTTGCTCTCATATCCTCGTGGGCATGAGTTTGATCCTCCGAGCTCTGGATTGCATCTTTTTAAGTATATATTGGTGGTTTTCCTTCTGTTCAGCCAATTTTAGACAGCCCATTTAAAGCTCACAGGCCCAACGCATATGCCCTTTGCCATTAACAAATTGTGCACTGCTTCAAACTGATAAACTAATGGTTTGGTCGGTTTGGTTATGTATATGTGTGATGATTCGGTTTGATTTTTAAATTTCTGTAAATGTGTTGCTGTTTGGTTTTGATTTGACGTTCAAACCGAACCGATTACACCCCTAGTCTGAACTAACATAAACAATCAAGGATGATCTGAATTTATGTGCTTTCCAAATGTGTTGCATACCAAATATATAATGATGATGGGTGTCTGTTATGTACTTAAGCACCTTGGAGAACCACACCCCAAAAGTTAGTTATTGAGGTGGGAGAGCCAAGCCACTTAAGTACCACATTGGTCATCCCATTCTAACTAATGTGGGTCAAAGGTAGCCCATACTACCTTTTTCTAACCGTGTCCATATTTTTCAGTTAAGGTTTCTGAACTTCAATTGAGTGGTCTAGTAATTTCATGCAGGTGTCCTCAGCGTATTGCAAGGCGAGGAAATTATGGGGCTTTTTTAATGGATAACTTACCTCTTGTAAAAGCAATAGTAGAGAAGCTGGCTTCCAATCTTCAAGTTCCTGTATCATGCAAAATCCGAATTTTCCCAAATCTACAAGATACAATTAATTATGCAAGAATGTTAGAGGAAGCTGGTTGCTCCCTTTTAGCTGTCCATGGCCGCACAAGAGATGAAAAAGATGGTAAGAAATTCCGAGCTAATTGGAGTGCCATTAGTGCTGTTAAAAACGCTGTACGAATTCCGGTTCTTGCCAATGGGAATATAAGGCACATGGAGGATGTTAACAACTGTTTGCAAGAGACTGGGGTTGAGGGTGTGCTTTCAGCAGAAACCCTTCTGGAGAATCCTGCACTTTTTGCTGGGTTTCGAACTGCCGAATGGATAGAGGGCTGCGAAGAAAATACCCGAGACGGTAACCTGGATCAAGCCGATTTGCTGGTGGACTACTTGAAGCTTTGTGAAAAATACCCTGTCCCATGGAGAATGATCCGTTCGCACGTACACAAGTTATTGGGAGATTGGTTCAAGATTCATCCACACATTAGAGAAGACTTCAATGCACAATCCAAGCTCACCTTTGAATTTCTTTACAATATGGTGGAGCGGCTGAGAGAGTTGCAGGTAAAAATTCCTCTTTATATCAAGGATTCTCATGCATCTGCAATTTCATCCAATCCTTGA

mRNA sequence

ATGGAAGTGGTGCAGCTGGTGAAAAATTTGCTCTCATATCCTCGTGGGCATGAGTTTGATCCTCCGAGCTCTGGATTGCATCTTTTTAAGTGTCCTCAGCGTATTGCAAGGCGAGGAAATTATGGGGCTTTTTTAATGGATAACTTACCTCTTGTAAAAGCAATAGTAGAGAAGCTGGCTTCCAATCTTCAAGTTCCTGTATCATGCAAAATCCGAATTTTCCCAAATCTACAAGATACAATTAATTATGCAAGAATGTTAGAGGAAGCTGGTTGCTCCCTTTTAGCTGTCCATGGCCGCACAAGAGATGAAAAAGATGGTAAGAAATTCCGAGCTAATTGGAGTGCCATTAGTGCTGTTAAAAACGCTGTACGAATTCCGGTTCTTGCCAATGGGAATATAAGGCACATGGAGGATGTTAACAACTGTTTGCAAGAGACTGGGGTTGAGGGTGTGCTTTCAGCAGAAACCCTTCTGGAGAATCCTGCACTTTTTGCTGGGTTTCGAACTGCCGAATGGATAGAGGGCTGCGAAGAAAATACCCGAGACGGTAACCTGGATCAAGCCGATTTGCTGGTGGACTACTTGAAGCTTTGTGAAAAATACCCTGTCCCATGGAGAATGATCCGTTCGCACGTACACAAGTTATTGGGAGATTGGTTCAAGATTCATCCACACATTAGAGAAGACTTCAATGCACAATCCAAGCTCACCTTTGAATTTCTTTACAATATGGTGGAGCGGCTGAGAGAGTTGCAGGTAAAAATTCCTCTTTATATCAAGGATTCTCATGCATCTGCAATTTCATCCAATCCTTGA

Coding sequence (CDS)

ATGGAAGTGGTGCAGCTGGTGAAAAATTTGCTCTCATATCCTCGTGGGCATGAGTTTGATCCTCCGAGCTCTGGATTGCATCTTTTTAAGTGTCCTCAGCGTATTGCAAGGCGAGGAAATTATGGGGCTTTTTTAATGGATAACTTACCTCTTGTAAAAGCAATAGTAGAGAAGCTGGCTTCCAATCTTCAAGTTCCTGTATCATGCAAAATCCGAATTTTCCCAAATCTACAAGATACAATTAATTATGCAAGAATGTTAGAGGAAGCTGGTTGCTCCCTTTTAGCTGTCCATGGCCGCACAAGAGATGAAAAAGATGGTAAGAAATTCCGAGCTAATTGGAGTGCCATTAGTGCTGTTAAAAACGCTGTACGAATTCCGGTTCTTGCCAATGGGAATATAAGGCACATGGAGGATGTTAACAACTGTTTGCAAGAGACTGGGGTTGAGGGTGTGCTTTCAGCAGAAACCCTTCTGGAGAATCCTGCACTTTTTGCTGGGTTTCGAACTGCCGAATGGATAGAGGGCTGCGAAGAAAATACCCGAGACGGTAACCTGGATCAAGCCGATTTGCTGGTGGACTACTTGAAGCTTTGTGAAAAATACCCTGTCCCATGGAGAATGATCCGTTCGCACGTACACAAGTTATTGGGAGATTGGTTCAAGATTCATCCACACATTAGAGAAGACTTCAATGCACAATCCAAGCTCACCTTTGAATTTCTTTACAATATGGTGGAGCGGCTGAGAGAGTTGCAGGTAAAAATTCCTCTTTATATCAAGGATTCTCATGCATCTGCAATTTCATCCAATCCTTGA

Protein sequence

MEVVQLVKNLLSYPRGHEFDPPSSGLHLFKCPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVEGVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSHASAISSNP
Homology
[Close]
BLAST of Cla006774 vs. Swiss-Prot
Match: DUS1L_HUMAN (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.8e-44
Identity = 89/200 (44.50%), Postives = 123/200 (61.50%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQ IA+RG+YGAFL D   L++ ++      L VPV+CKIR+FP +  T+ YA+MLE+A
Sbjct: 108 CPQMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKA 167

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 150
           GC LL VHGRT+++K      A+W  I AV+ AV IPV ANGNI+ ++DV  CL++TGV+
Sbjct: 168 GCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQ 227

Query: 151 GVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 210
           GV+SAE  L NPALF G   A W                +L  +YL +  ++P P   +R
Sbjct: 228 GVMSAEGNLHNPALFEGRSPAVW----------------ELAEEYLDIVREHPCPLSYVR 287

Query: 211 SHVHKLLGDWFKIHPHIRED 231
           +H+ KL     ++H  +RE+
Sbjct: 288 AHLFKLWHHTLQVHQELREE 291

[Close]
BLAST of Cla006774 vs. Swiss-Prot
Match: DUS1L_RAT (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 5.0e-44
Identity = 89/200 (44.50%), Postives = 122/200 (61.00%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQ IA+RG YGAFL +   L++ ++      L VPV+CKIR+FP +  T+ YA+MLE+A
Sbjct: 108 CPQMIAKRGRYGAFLQEEWDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKA 167

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 150
           GC LL VHGRT+++K      A+W  I AV+ AV IPV ANGNIR ++DV  C+Q+TGV+
Sbjct: 168 GCQLLTVHGRTKEQKGPMAGTASWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQ 227

Query: 151 GVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 210
           GV+SAE  L NPALF G   A W                +L  +YL +  ++P P   +R
Sbjct: 228 GVMSAEGNLHNPALFEGRSPAVW----------------ELADEYLDIVRQHPCPLSYVR 287

Query: 211 SHVHKLLGDWFKIHPHIRED 231
           +H+ KL     ++H  +RE+
Sbjct: 288 AHLFKLWHHTLQVHQQLREE 291

[Close]
BLAST of Cla006774 vs. Swiss-Prot
Match: DUS1L_MOUSE (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus1l PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 8.5e-44
Identity = 88/200 (44.00%), Postives = 123/200 (61.50%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQ IA+RG+YGAFL +   L++ ++      L VPV+CKIR+FP +  T+ YA+MLE+A
Sbjct: 108 CPQMIAKRGHYGAFLQEEWDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKA 167

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 150
           GC LL VHGRT+++K      A+W  I AV+ AV IPV ANGNI+ ++DV  C+Q+TGV+
Sbjct: 168 GCQLLTVHGRTKEQKGPMAGTASWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQ 227

Query: 151 GVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 210
           GV+SAE  L NPALF G   A W                +L  +YL +  ++P P   +R
Sbjct: 228 GVMSAEGNLHNPALFEGRSPAVW----------------ELAEEYLDIVRQHPCPLSYVR 287

Query: 211 SHVHKLLGDWFKIHPHIRED 231
           +H+ KL     ++H  +RE+
Sbjct: 288 AHLFKLWHHTLQVHQQLREE 291

[Close]
BLAST of Cla006774 vs. Swiss-Prot
Match: DUS1_SCHPO (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus1 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-30
Identity = 81/205 (39.51%), Postives = 118/205 (57.56%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQ IA++G YG+FL +N  L+++I+ KL + L +PV+ KIRIFP+ Q T++YA+M+ +A
Sbjct: 109 CPQGIAKKGKYGSFLQENWNLIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKA 168

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAV-KNAVRIPVL-ANGNIRHMEDVNNCLQETG 150
           G S+LAVHGR R++K      A+W  I  + KN     VL ANGNI H +D++ C++ TG
Sbjct: 169 GASILAVHGRLREQKGHFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTG 228

Query: 151 VEGVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPV---- 210
           V+GVLSAE  L NP +F               T    +D  D+  +YL +  ++ +    
Sbjct: 229 VDGVLSAEGSLYNPRIFLP-------PSSPLMTLYPRID--DMCEEYLNIIREFKLESDY 288

Query: 211 -PWRMIRSHVHKLLGDWFKIHPHIR 229
                I+ H+ KL+     IH  IR
Sbjct: 289 SSLSAIKGHLFKLMRPLLSIHTDIR 304

[Close]
BLAST of Cla006774 vs. Swiss-Prot
Match: DUS1_YEAST (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.0e-28
Identity = 72/217 (33.18%), Postives = 116/217 (53.46%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQ IA++G+YG+FLM+   L+  ++  L  NL+VPV+ KIRIF + + ++NYA+M+ +A
Sbjct: 121 CPQGIAKKGHYGSFLMEEWDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDA 180

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAV--RIPVLANGNIRHMEDVNNCLQETG 150
           G   L VHGR R++K  K   ANW  I  +++ +       ANGNI + ED++ C++  G
Sbjct: 181 GAQFLTVHGRVREQKGQKTGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIG 240

Query: 151 VEGVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLV----DYLKLCEKYPV 210
            + V+SAE  L NP +F   +T           ++    + D ++      +K C++   
Sbjct: 241 ADAVMSAEGNLYNPGVFNVGQT---------KNKEKIFPRVDKIIREYFQIVKECQESKA 300

Query: 211 PWRMIRSHVHKLLGDWFKIHPHIREDF-NAQSKLTFE 241
               ++SH  K+L  +   H  IR       +K T+E
Sbjct: 301 SKTAMKSHFFKILRPFLPHHTDIRSTLATMNAKATWE 328

[Close]
BLAST of Cla006774 vs. TrEMBL
Match: A0A0A0LTG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428390 PE=4 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 8.9e-133
Identity = 236/241 (97.93%), Postives = 239/241 (99.17%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLE+A
Sbjct: 185 CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEDA 244

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 150
           GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVN+CLQETGVE
Sbjct: 245 GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNDCLQETGVE 304

Query: 151 GVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 210
           GVLSAETLLENPALFAGFRTAEWIEG EENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR
Sbjct: 305 GVLSAETLLENPALFAGFRTAEWIEGHEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 364

Query: 211 SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSHASAISS 270
           SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVK+PLYIKDSHA AISS
Sbjct: 365 SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKMPLYIKDSHALAISS 424

Query: 271 N 272
           N
Sbjct: 425 N 425

[Close]
BLAST of Cla006774 vs. TrEMBL
Match: B9T4U6_RICCO (tRNA-dihydrouridine synthase, putative OS=Ricinus communis GN=RCOM_0550920 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 3.0e-112
Identity = 192/237 (81.01%), Postives = 220/237 (92.83%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQRIARRGNYGAFLMDNLPLVK++VEKLA NL VPVSCKIR+FP L DTI+YARMLEEA
Sbjct: 180 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRLFPKLDDTISYARMLEEA 239

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 150
           GCSLLAVHGRTRDEKDGKKFRA+W AI AV+NAV+IP+LANGN+RHM+DV NCL+ETG +
Sbjct: 240 GCSLLAVHGRTRDEKDGKKFRADWKAIKAVRNAVKIPLLANGNVRHMDDVRNCLEETGAD 299

Query: 151 GVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 210
           GVLSAE+LLENPALFAGFRTAEW+ G EE+TRDG LDQADLLV+YLKLCE+YPVPWRMIR
Sbjct: 300 GVLSAESLLENPALFAGFRTAEWVVGDEESTRDGKLDQADLLVEYLKLCEEYPVPWRMIR 359

Query: 211 SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSHASA 268
           +HVHK+LGDWF+IHPH+RE+ NAQS+LTFEFLYN+V++LR L V+IPLY+KD   SA
Sbjct: 360 AHVHKMLGDWFRIHPHVREELNAQSRLTFEFLYNVVDQLRALGVRIPLYVKDLDTSA 416

[Close]
BLAST of Cla006774 vs. TrEMBL
Match: A0A067GHH6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013813mg PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 3.9e-112
Identity = 196/238 (82.35%), Postives = 220/238 (92.44%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQRIARRGNYGAFLMDNLPLVK++VEKLA NL VPVSCKIR+FPNLQDTI YA+MLE+A
Sbjct: 43  CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 102

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 150
           GCSLLAVHGRTRDEKDGKKFRA+W+AI AVKNA+RIPVLANGN+RHMEDV  CL+ETG E
Sbjct: 103 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162

Query: 151 GVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 210
           GVLSAE+LLENPALFAGFRTAEWI G EE ++DGNLDQADLLV+YLKLCEKYPVPWRMIR
Sbjct: 163 GVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIR 222

Query: 211 SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSHASAI 269
           SHVHKLLG+WF+I P +RED NAQ++LTFEFLYN+V+RLREL V+IPLY KD+  + I
Sbjct: 223 SHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDADDAEI 280

[Close]
BLAST of Cla006774 vs. TrEMBL
Match: A0A067GH93_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013813mg PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 3.9e-112
Identity = 196/238 (82.35%), Postives = 220/238 (92.44%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQRIARRGNYGAFLMDNLPLVK++VEKLA NL VPVSCKIR+FPNLQDTI YA+MLE+A
Sbjct: 192 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 251

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 150
           GCSLLAVHGRTRDEKDGKKFRA+W+AI AVKNA+RIPVLANGN+RHMEDV  CL+ETG E
Sbjct: 252 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311

Query: 151 GVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 210
           GVLSAE+LLENPALFAGFRTAEWI G EE ++DGNLDQADLLV+YLKLCEKYPVPWRMIR
Sbjct: 312 GVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIR 371

Query: 211 SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSHASAI 269
           SHVHKLLG+WF+I P +RED NAQ++LTFEFLYN+V+RLREL V+IPLY KD+  + I
Sbjct: 372 SHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDADDAEI 429

[Close]
BLAST of Cla006774 vs. TrEMBL
Match: V4SQ46_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025630mg PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 2.5e-111
Identity = 195/238 (81.93%), Postives = 219/238 (92.02%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQRIARRGNYGAFLMDNLPLVK++VEKLA NL VPVSCKIR+FPNLQDTI YA+MLE+A
Sbjct: 192 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 251

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 150
           GCSLLAVHGRTRDEKDGKKFRA+W+AI AVKNA+RIPVLANGN+RHMEDV  CL+ETG E
Sbjct: 252 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311

Query: 151 GVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 210
           GVLSAE+LLENPALFAGFRTAEWI G EE ++DGNLDQADLLV+YLKLCEKYPVPWRMIR
Sbjct: 312 GVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIR 371

Query: 211 SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSHASAI 269
           SHVHKLLG+WF+I P +R D NAQ++LTFEFLYN+V+RLREL V+IPLY KD+  + I
Sbjct: 372 SHVHKLLGEWFRIQPGVRGDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDADDAEI 429

[Close]
BLAST of Cla006774 vs. NCBI nr
Match: gi|659125738|ref|XP_008462837.1| (PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)])

HSP 1 Score: 481.9 bits (1239), Expect = 7.5e-133
Identity = 236/241 (97.93%), Postives = 238/241 (98.76%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLE+A
Sbjct: 185 CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEDA 244

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 150
           GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE
Sbjct: 245 GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 304

Query: 151 GVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 210
           GVLSAETLLENPALFAGFRTAEWIEG EENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR
Sbjct: 305 GVLSAETLLENPALFAGFRTAEWIEGQEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 364

Query: 211 SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSHASAISS 270
           SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVK+PLYIKDSH  AISS
Sbjct: 365 SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKMPLYIKDSHVPAISS 424

Query: 271 N 272
           N
Sbjct: 425 N 425

[Close]
BLAST of Cla006774 vs. NCBI nr
Match: gi|778673658|ref|XP_011650036.1| (PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)])

HSP 1 Score: 481.1 bits (1237), Expect = 1.3e-132
Identity = 236/241 (97.93%), Postives = 239/241 (99.17%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLE+A
Sbjct: 185 CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEDA 244

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 150
           GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVN+CLQETGVE
Sbjct: 245 GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNDCLQETGVE 304

Query: 151 GVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 210
           GVLSAETLLENPALFAGFRTAEWIEG EENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR
Sbjct: 305 GVLSAETLLENPALFAGFRTAEWIEGHEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 364

Query: 211 SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSHASAISS 270
           SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVK+PLYIKDSHA AISS
Sbjct: 365 SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKMPLYIKDSHALAISS 424

Query: 271 N 272
           N
Sbjct: 425 N 425

[Close]
BLAST of Cla006774 vs. NCBI nr
Match: gi|255585121|ref|XP_002533266.1| (PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)])

HSP 1 Score: 412.9 bits (1060), Expect = 4.3e-112
Identity = 192/237 (81.01%), Postives = 220/237 (92.83%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQRIARRGNYGAFLMDNLPLVK++VEKLA NL VPVSCKIR+FP L DTI+YARMLEEA
Sbjct: 180 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRLFPKLDDTISYARMLEEA 239

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 150
           GCSLLAVHGRTRDEKDGKKFRA+W AI AV+NAV+IP+LANGN+RHM+DV NCL+ETG +
Sbjct: 240 GCSLLAVHGRTRDEKDGKKFRADWKAIKAVRNAVKIPLLANGNVRHMDDVRNCLEETGAD 299

Query: 151 GVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 210
           GVLSAE+LLENPALFAGFRTAEW+ G EE+TRDG LDQADLLV+YLKLCE+YPVPWRMIR
Sbjct: 300 GVLSAESLLENPALFAGFRTAEWVVGDEESTRDGKLDQADLLVEYLKLCEEYPVPWRMIR 359

Query: 211 SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSHASA 268
           +HVHK+LGDWF+IHPH+RE+ NAQS+LTFEFLYN+V++LR L V+IPLY+KD   SA
Sbjct: 360 AHVHKMLGDWFRIHPHVREELNAQSRLTFEFLYNVVDQLRALGVRIPLYVKDLDTSA 416

[Close]
BLAST of Cla006774 vs. NCBI nr
Match: gi|641860405|gb|KDO79094.1| (hypothetical protein CISIN_1g013813mg [Citrus sinensis])

HSP 1 Score: 412.5 bits (1059), Expect = 5.6e-112
Identity = 196/238 (82.35%), Postives = 220/238 (92.44%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQRIARRGNYGAFLMDNLPLVK++VEKLA NL VPVSCKIR+FPNLQDTI YA+MLE+A
Sbjct: 43  CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 102

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 150
           GCSLLAVHGRTRDEKDGKKFRA+W+AI AVKNA+RIPVLANGN+RHMEDV  CL+ETG E
Sbjct: 103 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162

Query: 151 GVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 210
           GVLSAE+LLENPALFAGFRTAEWI G EE ++DGNLDQADLLV+YLKLCEKYPVPWRMIR
Sbjct: 163 GVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIR 222

Query: 211 SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSHASAI 269
           SHVHKLLG+WF+I P +RED NAQ++LTFEFLYN+V+RLREL V+IPLY KD+  + I
Sbjct: 223 SHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDADDAEI 280

[Close]
BLAST of Cla006774 vs. NCBI nr
Match: gi|568883448|ref|XP_006494482.1| (PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)])

HSP 1 Score: 412.5 bits (1059), Expect = 5.6e-112
Identity = 195/238 (81.93%), Postives = 221/238 (92.86%), Query Frame = 1 

Query: 31  CPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEEA 90
           CPQRIARRGNYGAFLMDNLPLVK++VEKLA NL VPVSCKIR+FPNLQDTI YA+MLE+A
Sbjct: 192 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 251

Query: 91  GCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQETGVE 150
           GCSLLAVHGRTRDEKDGKKFRANW+AI AVKNA+RIPVLANGN+RHMEDV  CL+ETG E
Sbjct: 252 GCSLLAVHGRTRDEKDGKKFRANWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311

Query: 151 GVLSAETLLENPALFAGFRTAEWIEGCEENTRDGNLDQADLLVDYLKLCEKYPVPWRMIR 210
           GVLSAE+LLENPALFAGF+TAEWI G EE+++DGNL+QADLLV+YLKLCEKYPVPWRMIR
Sbjct: 312 GVLSAESLLENPALFAGFQTAEWIVGSEESSKDGNLNQADLLVEYLKLCEKYPVPWRMIR 371

Query: 211 SHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSHASAI 269
           SHVHKLLG+WF+I P +RED NAQ++LTFEFLYN+V+RLREL V+IPLY KD+  + I
Sbjct: 372 SHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDTDDAEI 429

The following BLAST results are available for this feature:
BLAST of Cla006774 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DUS1L_HUMAN3.8e-4444.50tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE... [more]
DUS1L_RAT5.0e-4444.50tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus... [more]
DUS1L_MOUSE8.5e-4444.00tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus1l PE... [more]
DUS1_SCHPO1.1e-3039.51tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (st... [more]
DUS1_YEAST5.0e-2833.18tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (str... [more]
BLAST of Cla006774 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTG2_CUCSA8.9e-13397.93Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428390 PE=4 SV=1[more]
B9T4U6_RICCO3.0e-11281.01tRNA-dihydrouridine synthase, putative OS=Ricinus communis GN=RCOM_0550920 PE=4 ... [more]
A0A067GHH6_CITSI3.9e-11282.35Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013813mg PE=4 SV=1[more]
A0A067GH93_CITSI3.9e-11282.35Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013813mg PE=4 SV=1[more]
V4SQ46_9ROSI2.5e-11181.93Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025630mg PE=4 SV=1[more]
BLAST of Cla006774 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125738|ref|XP_008462837.1|7.5e-13397.93PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)][more]
gi|778673658|ref|XP_011650036.1|1.3e-13297.93PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)][more]
gi|255585121|ref|XP_002533266.1|4.3e-11281.01PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)][more]
gi|641860405|gb|KDO79094.1|5.6e-11282.35hypothetical protein CISIN_1g013813mg [Citrus sinensis][more]
gi|568883448|ref|XP_006494482.1|5.6e-11281.93PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001269tRNA_hU_synthase
IPR013785Aldolase_TIM
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0017150tRNA dihydrouridine synthase activity
GO:0050660flavin adenine dinucleotide binding
GO:0003824catalytic activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0002943 tRNA dihydrouridine synthesis
biological_process GO:0008033 tRNA processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006774Cla006774.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001269tRNA-dihydrouridine synthasePANTHERPTHR11082TRNA-DIHYDROURIDINE SYNTHASEcoord: 31..271
score: 2.9E
IPR001269tRNA-dihydrouridine synthasePFAMPF01207Duscoord: 31..236
score: 1.3
IPR013785Aldolase-type TIM barrelGENE3DG3DSA:3.20.20.70coord: 31..173
score: 5.2
NoneNo IPR availablePANTHERPTHR11082:SF5TRNA-DIHYDROURIDINE(16/17) SYNTHASE [NAD(P)(+)]-LIKEcoord: 31..271
score: 2.9E
NoneNo IPR availableunknownSSF51395FMN-linked oxidoreductasescoord: 29..218
score: 4.03