Cla006769 (gene) Watermelon (97103) v1

Overview
NameCla006769
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUlp1 peptidase-like (AHRD V1 ***- Q5GIT0_CUCME); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1
LocationChr2 : 8935266 .. 8935616 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACGATGGGATAGTGGAGCTTTGGACCAATAAAGTTGCACACGCCAGTTTTTGGGCCATGCACTTGACGTTCCTCGAGTTCGCACATGGCCTAAAGGAAGACTACAAGCCTGCATGGTCGGAGATGGATTTCATGTTTGGGCCAATCAACATAAATGAGCATTGGCTCATGGCTGCAATCGACCTTCAGAAATCCATGATCTTCGTCTTCGACTCCATTTCAGACTACATCCATGCGGACATTGTTAACCCAAGACTCGAGCTGCTCAGCGGGGCCATACCATCAATTTTGATAGCTAGAGGATTTGACACTAGGTTTCCAAATTTCAAGTACAGCTGTGGGATGTGA

mRNA sequence

ATGCACGATGGGATAGTGGAGCTTTGGACCAATAAAGTTGCACACGCCAGTTTTTGGGCCATGCACTTGACGTTCCTCGAGTTCGCACATGGCCTAAAGGAAGACTACAAGCCTGCATGGTCGGAGATGGATTTCATGTTTGGGCCAATCAACATAAATGAGCATTGGCTCATGGCTGCAATCGACCTTCAGAAATCCATGATCTTCGTCTTCGACTCCATTTCAGACTACATCCATGCGGACATTGTTAACCCAAGACTCGAGCTGCTCAGCGGGGCCATACCATCAATTTTGATAGCTAGAGGATTTGACACTAGGTTTCCAAATTTCAAGTACAGCTGTGGGATGTGA

Coding sequence (CDS)

ATGCACGATGGGATAGTGGAGCTTTGGACCAATAAAGTTGCACACGCCAGTTTTTGGGCCATGCACTTGACGTTCCTCGAGTTCGCACATGGCCTAAAGGAAGACTACAAGCCTGCATGGTCGGAGATGGATTTCATGTTTGGGCCAATCAACATAAATGAGCATTGGCTCATGGCTGCAATCGACCTTCAGAAATCCATGATCTTCGTCTTCGACTCCATTTCAGACTACATCCATGCGGACATTGTTAACCCAAGACTCGAGCTGCTCAGCGGGGCCATACCATCAATTTTGATAGCTAGAGGATTTGACACTAGGTTTCCAAATTTCAAGTACAGCTGTGGGATGTGA

Protein sequence

MHDGIVELWTNKVAHASFWAMHLTFLEFAHGLKEDYKPAWSEMDFMFGPININEHWLMAAIDLQKSMIFVFDSISDYIHADIVNPRLELLSGAIPSILIARGFDTRFPNFKYSCGM
Homology
[Close]
BLAST of Cla006769 vs. TrEMBL
Match: Q5GIT0_CUCME (Ulp1 peptidase-like OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.9e-09
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 1 

Query: 9   WTNKVAHASFWAMHLTFLEFAHGLKEDYK--PAWSEMDFMFGPININEHWLMAAIDLQKS 68
           WT+  AH S W        F   +  DY   P W +++++   INI EHWL  A D++K 
Sbjct: 261 WTDPTAHLSIWTEKDVEYYFNTAVG-DYNDIPGWGDVNYVITCINIKEHWLAIAADMRKC 320

Query: 69  MIFVFDSISDYIHADIVNPRLELLSGAIPSILIARGFDTRFPNFKY 113
            I+VFDS+ +Y+   +V+  L++ +  I S+ IA G +     F Y
Sbjct: 321 RIYVFDSMPNYVEQKLVDEALQMPARCIASLAIAIGVNLHSDRFTY 365

[Close]
BLAST of Cla006769 vs. NCBI nr
Match: gi|46398241|gb|AAS91799.1| (Ulp1-like peptidase [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 8.4e-09
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 1 

Query: 9   WTNKVAHASFWAMHLTFLEFAHGLKEDYK--PAWSEMDFMFGPININEHWLMAAIDLQKS 68
           WT+  AH S W        F   +  DY   P W +++++   INI EHWL  A D++K 
Sbjct: 261 WTDPTAHLSIWTEKDVEYYFNTAVG-DYNDIPGWGDVNYVITCINIKEHWLAIAADMRKC 320

Query: 69  MIFVFDSISDYIHADIVNPRLELLSGAIPSILIARGFDTRFPNFKY 113
            I+VFDS+ +Y+   +V+  L++ +  I S+ IA G +     F Y
Sbjct: 321 RIYVFDSMPNYVEQKLVDEALQMPARCIASLAIAIGVNLHSDRFTY 365

The following BLAST results are available for this feature:
BLAST of Cla006769 vs. TrEMBL
Match NameE-valueIdentityDescription
Q5GIT0_CUCME5.9e-0933.96Ulp1 peptidase-like OS=Cucumis melo PE=4 SV=1[more]
BLAST of Cla006769 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|46398241|gb|AAS91799.1|8.4e-0933.96Ulp1-like peptidase [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003653Peptidase_C48_C
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0008234 cysteine-type peptidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006769Cla006769.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003653Ulp1 protease family, C-terminal catalytic domainPFAMPF02902Peptidase_C48coord: 39..78
score: 8.
IPR003653Ulp1 protease family, C-terminal catalytic domainPROFILEPS50600ULP_PROTEASEcoord: 1..116
score: 8
NoneNo IPR availableGENE3DG3DSA:3.30.310.130coord: 38..77
score: 8.
NoneNo IPR availableunknownSSF54001Cysteine proteinasescoord: 37..115
score: 4.51