Cla006741 (gene) Watermelon (97103) v1

NameCla006741
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionNucleic acid-binding protein (AHRD V1 **-* Q41834_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1
LocationChr6 : 3965513 .. 3966624 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGCGATGTTAAGAGCGAAGGCAGCGTTTCAAATCAGGAAGTGAAAAAGCAAGCACGTCCTTGTGAACTCTACGTTTGTAATTTGCCGAGGAGTTGCGACATTGCAGAGCTGGTCGAGATGTTTAAACCTTATGGCACAGTGTTGGCTGCTGAGGTAGATACGATTTTCTTTTGTCTTCCATATCTTCATGGTCTGATCTGCTCATTCGTTTTAGTTTTCCACAACCATCTAATTGCTTCTATTTCTGCTTGGAGTTTCCTTAAACAATTAGTTTGAAAGTTAGGGCAAATTGAATTGGAATTCTGAAAGCTTTTTCCCGAATTTTGAACTTTGAATGCTGTTATAATCATTATTCTTGAAAGGCAGTCCTCGATTTGCTTATCTGCCTTGAGTAAAATGGAATGATCTCAAATGGTGATTATGTTTCTTTTCATGTTTTGAACGGTATTGATTTGTTTCTCTGTAATTTGGACTTAGGTTTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGATATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTGCAGCATTAGATGGTTCTGTTAGTGTCAAATCAAGTATAAGTTGTTTTAATCTTAGCTCATTCAGTATCATTCAAAGATGAAGTTTATTATTTTGAAGGATGTTGGTGGACGTGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAAAGAGGAACCTTAATAACTTGCATTCATCACCCAAGAAGAATATAATATATGAAAGTCCTTACAAAGTATATATTGGAAATCTTGCTTGGGATGTCAAACCTGGAGATCTGAGGAACCTTTTTAGCAGATTTGGAACTGTGGTCAGTGCAAAAGTTTTGAATGATCGTAGAGCTGGAAAAAGCCGTGTTTACGGGTTTCTATCATTTTCTTCAGCGGCAGAGCGTGATGCAGCACTTTCTTTGGATGGAACCGTAAAATTCTCTCTATATATCCCTTGATGTTTGACTTTTGGATTCCATTTTGTTATTATTGAACATTTTACTCTTTCATTGTAGGAGTTCAACAACAGAAAACTTGTTGTTAGAGAAGGTATGGAAAGGAACGAGTCTTAG

mRNA sequence

ATGGAAAGCGATGTTAAGAGCGAAGGCAGCGTTTCAAATCAGGAAGTGAAAAAGCAAGCACGTCCTTGTGAACTCTACGTTTGTAATTTGCCGAGGAGTTGCGACATTGCAGAGCTGGTCGAGATGTTTAAACCTTATGGCACAGTGTTGGCTGCTGAGGTTTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGATATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTGCAGCATTAGATGGTTCTGATGTTGGTGGACGTGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAAAGAGGAACCTTAATAACTTGCATTCATCACCCAAGAAGAATATAATATATGAAAGTCCTTACAAAGTATATATTGGAAATCTTGCTTGGGATGTCAAACCTGGAGATCTGAGGAACCTTTTTAGCAGATTTGGAACTGTGGTCAGTGCAAAAGTTTTGAATGATCGTAGAGCTGGAAAAAGCCGTGTTTACGGGTTTCTATCATTTTCTTCAGCGGCAGAGCGTGATGCAGCACTTTCTTTGGATGGAACCGAGTTCAACAACAGAAAACTTGTTGTTAGAGAAGGTATGGAAAGGAACGAGTCTTAG

Coding sequence (CDS)

ATGGAAAGCGATGTTAAGAGCGAAGGCAGCGTTTCAAATCAGGAAGTGAAAAAGCAAGCACGTCCTTGTGAACTCTACGTTTGTAATTTGCCGAGGAGTTGCGACATTGCAGAGCTGGTCGAGATGTTTAAACCTTATGGCACAGTGTTGGCTGCTGAGGTTTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGATATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTGCAGCATTAGATGGTTCTGATGTTGGTGGACGTGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAAAGAGGAACCTTAATAACTTGCATTCATCACCCAAGAAGAATATAATATATGAAAGTCCTTACAAAGTATATATTGGAAATCTTGCTTGGGATGTCAAACCTGGAGATCTGAGGAACCTTTTTAGCAGATTTGGAACTGTGGTCAGTGCAAAAGTTTTGAATGATCGTAGAGCTGGAAAAAGCCGTGTTTACGGGTTTCTATCATTTTCTTCAGCGGCAGAGCGTGATGCAGCACTTTCTTTGGATGGAACCGAGTTCAACAACAGAAAACTTGTTGTTAGAGAAGGTATGGAAAGGAACGAGTCTTAG

Protein sequence

MESDVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFNNRKLVVREGMERNES
BLAST of Cla006741 vs. Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1

Query: 2   ESDVKSEGSVSN-QEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPET 61
           E+ V  EG V   Q   +     +L+V NLP   D  +L  +F   G V  AEV  N ET
Sbjct: 33  ETQVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRET 92

Query: 62  GISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNI 121
             S+G G+VTM ++  A+ ++  L+G D+ GR++ V  A      +R       +P+ + 
Sbjct: 93  DRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGD- 152

Query: 122 IYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAE- 181
            +E   +VY+GNL WDV    L  LFS  G VVSA+V++DR  G+SR +GF++ SS +E 
Sbjct: 153 -FEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEV 212

Query: 182 RDAALSLDGTEFNNRKLVVREGMER 205
            DA  +LDG   + R + V    ER
Sbjct: 213 NDAIAALDGQTLDGRAVRVNVAEER 228

BLAST of Cla006741 vs. Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-25
Identity = 71/192 (36.98%), Postives = 106/192 (55.21%), Query Frame = 1

Query: 8   EGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCG 67
           +G    +E +  +   +++V NLP S D A L E+F+  G V   EV  +  TG S+G G
Sbjct: 72  DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFG 131

Query: 68  YVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYK 127
           +VTM S    + +    +G ++ GR +RV       P+KR  ++     +    ++S  +
Sbjct: 132 FVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP--PEKRENSSFRGGSRGGGSFDSSNR 191

Query: 128 VYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDAAL-SL 187
           VY+GNLAW V    L  LFS  G VV AKV+ DR +G+SR +GF+++SSA E + A+ SL
Sbjct: 192 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 251

Query: 188 DGTEFNNRKLVV 199
           DG + N R + V
Sbjct: 252 DGVDLNGRAIRV 261


HSP 2 Score: 49.3 bits (116), Expect = 5.9e-05
Identity = 29/83 (34.94%), Postives = 43/83 (51.81%), Query Frame = 1

Query: 25  LYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAAL 84
           +YV NL    D   L  +F   G V+ A+V  + ++G S+G G+VT  S      +I +L
Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249

Query: 85  DGSDVGGREMRVRFAVDMNPKKR 108
           DG D+ GR +RV  A    P+++
Sbjct: 250 DGVDLNGRAIRVSPAEARPPRRQ 272

BLAST of Cla006741 vs. Swiss-Prot
Match: CP31A_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-25
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1

Query: 2   ESDVKSEGSVSNQ-EVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPET 61
           E DV SEG+VS + E  + +   +L+V NL    +   L  +F+  GTV  AEV  N ET
Sbjct: 129 EGDV-SEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRET 188

Query: 62  GISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNI 121
             S+G G+VTM S++ A+ ++   +  D+ GR + V  A     +         +P+   
Sbjct: 189 DQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER------APR--- 248

Query: 122 IYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER 181
           +YE  ++VY+GNL WDV  G L  LFS  G VV A+V+ DR  G+SR +GF++ S   E 
Sbjct: 249 VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDEL 308

Query: 182 DAALS-LDGTEFNNRKLVVREGMER 205
           + A+S LDG     R + V    ER
Sbjct: 309 NEAISALDGQNLEGRAIRVNVAEER 323

BLAST of Cla006741 vs. Swiss-Prot
Match: CP33_ARATH (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.7e-25
Identity = 69/213 (32.39%), Postives = 111/213 (52.11%), Query Frame = 1

Query: 2   ESDVKSEGSVSNQEVKKQARPCE-------LYVCNLPRSCDIAELVEMFKPYGTVLAAEV 61
           E +V+ EG    +EV+++ +  +       LYV NLP +   +EL ++F   GTV+  ++
Sbjct: 88  EEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI 147

Query: 62  SRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHS 121
             +  T  S+G G+VTMGSI  AK ++   + S +GGR ++V F       +  +     
Sbjct: 148 VYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKI 207

Query: 122 SPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSF 181
                   +SP+KVY GNL W++    L++ F     V+ AKV+ +R  G+SR +GF+SF
Sbjct: 208 RDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISF 267

Query: 182 SSAAERDAAL-SLDGTEFNNRKLVVREGMERNE 207
            SA    +AL +++G E   R L +    ER +
Sbjct: 268 ESAENVQSALATMNGVEVEGRALRLNLASEREK 300

BLAST of Cla006741 vs. Swiss-Prot
Match: CP31B_ARATH (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-24
Identity = 68/205 (33.17%), Postives = 107/205 (52.20%), Query Frame = 1

Query: 1   MESDVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPET 60
           ++   +SE  V   E  ++A+   L+V NLP   D   L  +F+  GTV  +EV  N +T
Sbjct: 94  VDESFESEDGVGFPEPPEEAK---LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDT 153

Query: 61  GISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNI 120
             S+G G+VTM ++  A+ ++   +  +V GR + V  A     +          P+   
Sbjct: 154 DQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPER------QPR--- 213

Query: 121 IYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER 180
           +Y++ +++Y+GNL WDV  G L  LFS  G VV A+V++DR  G+SR +GF+  S+  E 
Sbjct: 214 VYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEV 273

Query: 181 DAAL-SLDGTEFNNRKLVVREGMER 205
           + A+ +LDG     R + V    ER
Sbjct: 274 NVAIAALDGQNLEGRAIKVNVAEER 286

BLAST of Cla006741 vs. TrEMBL
Match: A0A0A0KAH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095890 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 1.9e-106
Identity = 194/207 (93.72%), Postives = 203/207 (98.07%), Query Frame = 1

Query: 1   MESDVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPET 60
           +E DVKSEGS+SNQEVKK ARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPET
Sbjct: 80  VEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPET 139

Query: 61  GISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNI 120
           GISKGCGYVTMGSINSAKVSI ALDGSDVGGREMRVRFAVDMN KKRNLNNLHSSPKKNI
Sbjct: 140 GISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNI 199

Query: 121 IYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER 180
           IYESPYKVY+GNL+WDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER
Sbjct: 200 IYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER 259

Query: 181 DAALSLDGTEFNNRKLVVREGMERNES 208
           DA++SLDGTE+NNRKLVVREG+ER+ES
Sbjct: 260 DASISLDGTEYNNRKLVVREGLERSES 286

BLAST of Cla006741 vs. TrEMBL
Match: B9RNK5_RICCO (Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1339680 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.7e-78
Identity = 144/205 (70.24%), Postives = 175/205 (85.37%), Query Frame = 1

Query: 2   ESDVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETG 61
           E++ +SE     +++KKQ RPCELYVCNLPRSCDIAELVE+FKPYGTV++ EVSRNPETG
Sbjct: 77  ENENESEEDELGRQLKKQPRPCELYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETG 136

Query: 62  ISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNII 121
           IS+GCG+VTMGSINSAK +IAALDGSD+GGREMRV+F+VDMN  +RN   L S+P KN+ 
Sbjct: 137 ISRGCGFVTMGSINSAKNAIAALDGSDIGGREMRVKFSVDMNSGRRNPEPLSSAPTKNLF 196

Query: 122 YESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERD 181
           YESP+KVY+GNLAW VKP +LR+ FS+FGTVVSA+VL DR+AGK+R YGFLSFSS  ERD
Sbjct: 197 YESPFKVYVGNLAWTVKPEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERD 256

Query: 182 AALSLDGTEFNNRKLVVREGMERNE 207
           AALS +G +F  R LVVR+G+ER +
Sbjct: 257 AALSFNGKDFRGRILVVRKGVERED 281

BLAST of Cla006741 vs. TrEMBL
Match: V4U1N6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021531mg PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-74
Identity = 140/205 (68.29%), Postives = 173/205 (84.39%), Query Frame = 1

Query: 3   SDVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGI 62
           ++V  + SV  +E + +ARPCELYVCNLPRS DI+EL+EMFKP+GTVL+ EVSRNPETGI
Sbjct: 82  NEVDDDSSV--EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 141

Query: 63  SKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNIIY 122
           S+GCGY+TMGSINSAK +I ALDGSDVGGREMRVRF++DMN + RN   L S PKK  +Y
Sbjct: 142 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 201

Query: 123 ESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDA 182
           ESP+K+Y+GNL+W VKP DLRN F RFGTVVSA+VL+DR+   +RV+GF+SFSS AERDA
Sbjct: 202 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 261

Query: 183 ALSLDGTEFNNRKLVVREGMERNES 208
           ALSL+GT+F  R ++VREG++R ES
Sbjct: 262 ALSLNGTDFRGRTIIVREGVDRTES 284

BLAST of Cla006741 vs. TrEMBL
Match: A0A067H6R2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022096mg PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-74
Identity = 140/205 (68.29%), Postives = 173/205 (84.39%), Query Frame = 1

Query: 3   SDVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGI 62
           ++V  + SV  +E + +ARPCELYVCNLPRS DI+EL+EMFKP+GTVL+ EVSRNPETGI
Sbjct: 82  NEVDDDSSV--EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 141

Query: 63  SKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNIIY 122
           S+GCGY+TMGSINSAK +I ALDGSDVGGREMRVRF++DMN + RN   L S PKK  +Y
Sbjct: 142 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 201

Query: 123 ESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDA 182
           ESP+K+Y+GNL+W VKP DLRN F RFGTVVSA+VL+DR+   +RV+GF+SFSS AERDA
Sbjct: 202 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 261

Query: 183 ALSLDGTEFNNRKLVVREGMERNES 208
           ALSL+GT+F  R ++VREG++R ES
Sbjct: 262 ALSLNGTDFRGRTIIVREGVDRTES 284

BLAST of Cla006741 vs. TrEMBL
Match: F6I2Y3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02560 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 9.6e-71
Identity = 135/204 (66.18%), Postives = 166/204 (81.37%), Query Frame = 1

Query: 4   DVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGIS 63
           D+ ++ S S QE K   RPCELYVCNLPRSC I+EL+ MFKP+GTV + EV RN ETG+S
Sbjct: 67  DINTDDS-SPQESKSSVRPCELYVCNLPRSCGISELLSMFKPHGTVQSIEVCRNAETGVS 126

Query: 64  KGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNIIYE 123
           +G GYVTM S+  AK +IAALDGSDVGGREMRVRF+ DMN ++RN   L+S+P +N+I+E
Sbjct: 127 RGSGYVTMSSMREAKAAIAALDGSDVGGREMRVRFSTDMNFRRRNSEALNSAPMRNLIFE 186

Query: 124 SPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDAA 183
           SPYK+Y+GNLAW +KP DLRN FS+FGTVVSA+V++DR+AGK R YGFLSFSSAAE +AA
Sbjct: 187 SPYKLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAA 246

Query: 184 LSLDGTEFNNRKLVVREGMERNES 208
           +SL+G EF  R LVV  GM+R ES
Sbjct: 247 MSLNGKEFRGRSLVVSAGMKRVES 269

BLAST of Cla006741 vs. NCBI nr
Match: gi|449445537|ref|XP_004140529.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus])

HSP 1 Score: 393.3 bits (1009), Expect = 2.7e-106
Identity = 194/207 (93.72%), Postives = 203/207 (98.07%), Query Frame = 1

Query: 1   MESDVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPET 60
           +E DVKSEGS+SNQEVKK ARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPET
Sbjct: 80  VEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPET 139

Query: 61  GISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNI 120
           GISKGCGYVTMGSINSAKVSI ALDGSDVGGREMRVRFAVDMN KKRNLNNLHSSPKKNI
Sbjct: 140 GISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNI 199

Query: 121 IYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER 180
           IYESPYKVY+GNL+WDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER
Sbjct: 200 IYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER 259

Query: 181 DAALSLDGTEFNNRKLVVREGMERNES 208
           DA++SLDGTE+NNRKLVVREG+ER+ES
Sbjct: 260 DASISLDGTEYNNRKLVVREGLERSES 286

BLAST of Cla006741 vs. NCBI nr
Match: gi|659119739|ref|XP_008459818.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 388.7 bits (997), Expect = 6.6e-105
Identity = 193/207 (93.24%), Postives = 201/207 (97.10%), Query Frame = 1

Query: 1   MESDVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPET 60
           +E DVKSE SVSNQEVKK ARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPET
Sbjct: 78  VEGDVKSESSVSNQEVKKLARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPET 137

Query: 61  GISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNI 120
           GISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPK RNLNNL+SSPKKNI
Sbjct: 138 GISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKNRNLNNLNSSPKKNI 197

Query: 121 IYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER 180
           IYESPYKVY+GNL+WDV+PGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER
Sbjct: 198 IYESPYKVYVGNLSWDVQPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER 257

Query: 181 DAALSLDGTEFNNRKLVVREGMERNES 208
           DA++SLDGTEFN RKLVVREG ER+ES
Sbjct: 258 DASISLDGTEFNKRKLVVREGFERSES 284

BLAST of Cla006741 vs. NCBI nr
Match: gi|255548039|ref|XP_002515076.1| (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Ricinus communis])

HSP 1 Score: 299.3 bits (765), Expect = 5.2e-78
Identity = 144/205 (70.24%), Postives = 175/205 (85.37%), Query Frame = 1

Query: 2   ESDVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETG 61
           E++ +SE     +++KKQ RPCELYVCNLPRSCDIAELVE+FKPYGTV++ EVSRNPETG
Sbjct: 77  ENENESEEDELGRQLKKQPRPCELYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETG 136

Query: 62  ISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNII 121
           IS+GCG+VTMGSINSAK +IAALDGSD+GGREMRV+F+VDMN  +RN   L S+P KN+ 
Sbjct: 137 ISRGCGFVTMGSINSAKNAIAALDGSDIGGREMRVKFSVDMNSGRRNPEPLSSAPTKNLF 196

Query: 122 YESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERD 181
           YESP+KVY+GNLAW VKP +LR+ FS+FGTVVSA+VL DR+AGK+R YGFLSFSS  ERD
Sbjct: 197 YESPFKVYVGNLAWTVKPEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERD 256

Query: 182 AALSLDGTEFNNRKLVVREGMERNE 207
           AALS +G +F  R LVVR+G+ER +
Sbjct: 257 AALSFNGKDFRGRILVVRKGVERED 281

BLAST of Cla006741 vs. NCBI nr
Match: gi|567904474|ref|XP_006444725.1| (hypothetical protein CICLE_v10021531mg [Citrus clementina])

HSP 1 Score: 287.7 bits (735), Expect = 1.6e-74
Identity = 140/205 (68.29%), Postives = 173/205 (84.39%), Query Frame = 1

Query: 3   SDVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGI 62
           ++V  + SV  +E + +ARPCELYVCNLPRS DI+EL+EMFKP+GTVL+ EVSRNPETGI
Sbjct: 82  NEVDDDSSV--EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 141

Query: 63  SKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNIIY 122
           S+GCGY+TMGSINSAK +I ALDGSDVGGREMRVRF++DMN + RN   L S PKK  +Y
Sbjct: 142 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 201

Query: 123 ESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDA 182
           ESP+K+Y+GNL+W VKP DLRN F RFGTVVSA+VL+DR+   +RV+GF+SFSS AERDA
Sbjct: 202 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 261

Query: 183 ALSLDGTEFNNRKLVVREGMERNES 208
           ALSL+GT+F  R ++VREG++R ES
Sbjct: 262 ALSLNGTDFRGRTIIVREGVDRTES 284

BLAST of Cla006741 vs. NCBI nr
Match: gi|729412149|ref|XP_010556629.1| (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Tarenaya hassleriana])

HSP 1 Score: 279.3 bits (713), Expect = 5.6e-72
Identity = 137/206 (66.50%), Postives = 171/206 (83.01%), Query Frame = 1

Query: 4   DVKSEGSVSNQEV-KKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGI 63
           ++  E  VS+ E  KK+ RPCELYVCNLPRS DI +L+EMF+PYGTV++ EVSRNPETG 
Sbjct: 78  EIDGESVVSDGEAEKKKERPCELYVCNLPRSYDIPQLLEMFQPYGTVISIEVSRNPETGE 137

Query: 64  SKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNP-KKRNLNNLHSSPKKNII 123
           S+G GYVTM S+ SAK++IAALDGS+VGGREMRVRF+V+MNP  +RN   L+S+PKK +I
Sbjct: 138 SRGSGYVTMSSVYSAKIAIAALDGSEVGGREMRVRFSVEMNPGARRNPAGLNSTPKKILI 197

Query: 124 YESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERD 183
           YES YK+Y+GNL W  KPGDLRN FSRFGT+VS +VL+DR+ GK+RV+ FLS+S   ERD
Sbjct: 198 YESQYKIYVGNLPWATKPGDLRNHFSRFGTIVSVRVLHDRKVGKNRVFAFLSYSKPEERD 257

Query: 184 AALSLDGTEFNNRKLVVREGMERNES 208
           AA+SL GTEF  R++VVREG+ER+ES
Sbjct: 258 AAISLTGTEFQGRRIVVREGIERDES 283

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ROC1_SPIOL1.2e-2637.0728 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1[more]
ROC1_NICSY1.4e-2536.9829 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1[more]
CP31A_ARATH1.8e-2537.0731 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV... [more]
CP33_ARATH6.7e-2532.39RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=... [more]
CP31B_ARATH2.0e-2433.17RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 S... [more]
Match NameE-valueIdentityDescription
A0A0A0KAH9_CUCSA1.9e-10693.72Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095890 PE=4 SV=1[more]
B9RNK5_RICCO3.7e-7870.24Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1339680 PE=... [more]
V4U1N6_9ROSI1.1e-7468.29Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021531mg PE=4 SV=1[more]
A0A067H6R2_CITSI1.1e-7468.29Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022096mg PE=4 SV=1[more]
F6I2Y3_VITVI9.6e-7166.18Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02560 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
gi|449445537|ref|XP_004140529.1|2.7e-10693.72PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus][more]
gi|659119739|ref|XP_008459818.1|6.6e-10593.24PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo][more]
gi|255548039|ref|XP_002515076.1|5.2e-7870.24PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Ricinus communis][more]
gi|567904474|ref|XP_006444725.1|1.6e-7468.29hypothetical protein CICLE_v10021531mg [Citrus clementina][more]
gi|729412149|ref|XP_010556629.1|5.6e-7266.50PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Tarenaya hassleriana][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0008150 biological_process
biological_process GO:1901259 chloroplast rRNA processing
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0005634 nucleus
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:1990904 ribonucleoprotein complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003729 mRNA binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU58822watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006741Cla006741.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU58822WMU58822transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 25..95
score: 3.0E-15coord: 128..196
score: 4.3
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 127..199
score: 1.1E-21coord: 24..97
score: 3.5
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 126..203
score: 17.097coord: 23..101
score: 15
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 110..204
score: 2.6E-23coord: 12..106
score: 1.3
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 22..111
score: 6.18E-24coord: 119..204
score: 3.36
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 2..199
score: 1.8