Cla006672 (gene) Watermelon (97103) v1

Overview
NameCla006672
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 2994762 .. 2995052 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGATGCTGGATCATCGCCCTCCCAAGAAAATCAATCATTTTCTTCCCGTCTCCATGAATCTTCTCCAGGAAAACCTCAATCATTGGAAGACTTAGCTAAGCCTTGGGCTGAGTACGCAGCTCAACAGGCCCTGCTATACCAGCGGGCTATCGACCAATCCTTGGAGTCTGCCATTCAAGCCTCCAAATCTCGCCTTTCTCAGATTCGTTCCGCCTCCTATCCTCATTTCCAGAAGGCCATTGTAATTTCTCTATCTCCGTTTTTCCCGTTGTTCTTTGTTTAG

mRNA sequence

ATGGCGATGGATGCTGGATCATCGCCCTCCCAAGAAAATCAATCATTTTCTTCCCGTCTCCATGAATCTTCTCCAGGAAAACCTCAATCATTGGAAGACTTAGCTAAGCCTTGGGCTGAGTACGCAGCTCAACAGGCCCTGCTATACCAGCGGGCTATCGACCAATCCTTGGAGTCTGCCATTCAAGCCTCCAAATCTCGCCTTTCTCAGATTCGTTCCGCCTCCTATCCTCATTTCCAGAAGGCCATTGTAATTTCTCTATCTCCGTTTTTCCCGTTGTTCTTTGTTTAG

Coding sequence (CDS)

ATGGCGATGGATGCTGGATCATCGCCCTCCCAAGAAAATCAATCATTTTCTTCCCGTCTCCATGAATCTTCTCCAGGAAAACCTCAATCATTGGAAGACTTAGCTAAGCCTTGGGCTGAGTACGCAGCTCAACAGGCCCTGCTATACCAGCGGGCTATCGACCAATCCTTGGAGTCTGCCATTCAAGCCTCCAAATCTCGCCTTTCTCAGATTCGTTCCGCCTCCTATCCTCATTTCCAGAAGGCCATTGTAATTTCTCTATCTCCGTTTTTCCCGTTGTTCTTTGTTTAG

Protein sequence

MAMDAGSSPSQENQSFSSRLHESSPGKPQSLEDLAKPWAEYAAQQALLYQRAIDQSLESAIQASKSRLSQIRSASYPHFQKAIVISLSPFFPLFFV
Homology
[Close]
BLAST of Cla006672 vs. TrEMBL
Match: M5X7F2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024369mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-07
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1 

Query: 32  EDLAKPWAEYAAQQALLYQRAIDQSLESAIQASKSRLSQIRSASYPHFQKAI 84
           E  A PW +YA +QA +YQ+ I+++ ESAI+AS+SRLS+IRS S  HF + I
Sbjct: 52  EQSATPWIDYAVEQARVYQKTIEETFESAIEASRSRLSEIRSTSAAHFSQTI 103

[Close]
BLAST of Cla006672 vs. TrEMBL
Match: B9RD54_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609670 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = 1 

Query: 7  SSPSQENQSFSSRLH--ESSPGKPQSLEDLAKPWAEYAAQQALLYQRAIDQSLESAIQAS 66
          SSPS+E  S  +  H  E+   K ++LE++  PW +YA QQAL YQ+ I+++++ A +A 
Sbjct: 8  SSPSEEKPSPPAPSHFPEAEMIKYKTLEEVT-PWIDYAIQQALTYQKTIEEAVDDATKAL 67

Query: 67 KSRLSQIRSASYPHFQKAI 84
          +SR S+IRS S  HF + +
Sbjct: 68 RSRFSEIRSTSSAHFNQTM 85

[Close]
BLAST of Cla006672 vs. TrEMBL
Match: I3SGI1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1 

Query: 21 HESSPGKPQSLEDLAKPWAEYAAQQALLYQRAIDQSLESAIQASKSRLSQIRSASYPHFQ 80
          H ++  +P    D   P+ +YA  QALLYQ+A + ++ESAI ASKSR SQIRS S  HFQ
Sbjct: 20 HSTTSNRPTL--DPTTPFIDYAVGQALLYQKAFNDAVESAIDASKSRFSQIRSTSSAHFQ 79

Query: 81 KAI 84
          + +
Sbjct: 80 QTL 80

[Close]
BLAST of Cla006672 vs. TrEMBL
Match: I3T3K0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1 

Query: 21 HESSPGKPQSLEDLAKPWAEYAAQQALLYQRAIDQSLESAIQASKSRLSQIRSASYPHFQ 80
          H ++  +P    D   P+ +YA  QALLYQ+A + ++ESAI ASKSR SQIRS S  HFQ
Sbjct: 20 HSTTSNRPTL--DPTTPFIDYAVGQALLYQKAFNDAVESAIDASKSRFSQIRSTSSAHFQ 79

Query: 81 KAI 84
          + +
Sbjct: 80 QTL 80

[Close]
BLAST of Cla006672 vs. TrEMBL
Match: A0A067H0Z7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024845mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 1 

Query: 27 KPQSLEDLAKPWAEYAAQQALLYQRAIDQSLESAIQASKSRLSQIRSASYPHFQKAI 84
          K QSLED   PW + A QQ ++Y++ +++S++SAI+AS+SRLSQ R  +  HFQ+ +
Sbjct: 24 KSQSLED-GNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTL 79

[Close]
BLAST of Cla006672 vs. NCBI nr
Match: gi|659119565|ref|XP_008459726.1| (PREDICTED: uncharacterized protein LOC103498769 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 2.5e-30
Identity = 73/83 (87.95%), Postives = 74/83 (89.16%), Query Frame = 1 

Query: 1  MAMDAGSSPSQENQSFSSRLHESSPGKPQSLEDLAKPWAEYAAQQALLYQRAIDQSLESA 60
          MAMDAGSS SQENQS  S  HESS  KPQSLEDLAKPWAEYAAQQALLYQRAID SLESA
Sbjct: 1  MAMDAGSSSSQENQSSPSYHHESSSSKPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA 60

Query: 61 IQASKSRLSQIRSASYPHFQKAI 84
          I+ASKSRLSQIRS SYPHFQKAI
Sbjct: 61 IEASKSRLSQIRSTSYPHFQKAI 83

[Close]
BLAST of Cla006672 vs. NCBI nr
Match: gi|778712231|ref|XP_011656867.1| (PREDICTED: uncharacterized protein LOC101214960 isoform X1 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-28
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 1 

Query: 1  MAMDAGSSPSQENQSFSSRLHESSPGKPQSLEDLAKPWAEYAAQQALLYQRAIDQSLESA 60
          MAMDAGSS SQENQS  S  H+SS  KPQSLEDLAKPWAEYAAQQALLYQRAID SLESA
Sbjct: 1  MAMDAGSSSSQENQSSPSYHHQSSSPKPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA 60

Query: 61 IQASKSRLSQIRSASYPHFQKAI 84
          I+ SKSRLSQIRS S+PHFQKA+
Sbjct: 61 IEVSKSRLSQIRSTSFPHFQKAV 83

[Close]
BLAST of Cla006672 vs. NCBI nr
Match: gi|778712235|ref|XP_011656868.1| (PREDICTED: uncharacterized protein LOC101214960 isoform X2 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 6.7e-28
Identity = 68/81 (83.95%), Postives = 71/81 (87.65%), Query Frame = 1 

Query: 1  MAMDAGSSPSQENQSFSSRLHESSPGKPQSLEDLAKPWAEYAAQQALLYQRAIDQSLESA 60
          MAMDAGSS SQENQS  S  H+SS  KPQSLEDLAKPWAEYAAQQALLYQRAID SLESA
Sbjct: 1  MAMDAGSSSSQENQSSPSYHHQSSSPKPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA 60

Query: 61 IQASKSRLSQIRSASYPHFQK 82
          I+ SKSRLSQIRS S+PHFQK
Sbjct: 61 IEVSKSRLSQIRSTSFPHFQK 81

[Close]
BLAST of Cla006672 vs. NCBI nr
Match: gi|694424158|ref|XP_009339857.1| (PREDICTED: uncharacterized protein LOC103932041 [Pyrus x bretschneideri])

HSP 1 Score: 68.6 bits (166), Expect = 7.0e-09
Identity = 33/74 (44.59%), Postives = 50/74 (67.57%), Query Frame = 1 

Query: 10 SQENQSFSSRLHESSPGKPQSLEDLAKPWAEYAAQQALLYQRAIDQSLESAIQASKSRLS 69
          S++N + S     S    PQ+L+ LA PW +YA +QA +YQ+ ++++ ESAI AS+SRLS
Sbjct: 9  SEKNPTLSHS--NSISNSPQTLDQLATPWVDYAVEQARIYQKNVEETFESAIAASRSRLS 68

Query: 70 QIRSASYPHFQKAI 84
          +IR+ S  HF + I
Sbjct: 69 EIRATSAAHFSQTI 80

[Close]
BLAST of Cla006672 vs. NCBI nr
Match: gi|657968044|ref|XP_008375716.1| (PREDICTED: uncharacterized protein LOC103438950 [Malus domestica])

HSP 1 Score: 68.2 bits (165), Expect = 9.1e-09
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 10 SQENQSFSSRLHESSPGKPQSLEDLAKPWAEYAAQQALLYQRAIDQSLESAIQASKSRLS 69
          S+EN + S     S    PQ L+ LA PW +YA +QA +YQ+ ++++ ESA+ AS+SRLS
Sbjct: 9  SEENPTLSHS--NSISHSPQPLDQLATPWVDYAVEQARIYQKNVEETFESAVAASRSRLS 68

Query: 70 QIRSASYPHFQKAI 84
          +IR+ S  HF + I
Sbjct: 69 EIRATSAAHFSQTI 80

The following BLAST results are available for this feature:
BLAST of Cla006672 vs. TrEMBL
Match NameE-valueIdentityDescription
M5X7F2_PRUPE3.5e-0753.85Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024369mg PE=4 SV=1[more]
B9RD54_RICCO1.3e-0641.77Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609670 PE=4 SV=1[more]
I3SGI1_LOTJA1.7e-0649.21Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
I3T3K0_LOTJA1.7e-0649.21Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A067H0Z7_CITSI3.0e-0647.37Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024845mg PE=4 SV=1[more]
BLAST of Cla006672 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119565|ref|XP_008459726.1|2.5e-3087.95PREDICTED: uncharacterized protein LOC103498769 [Cucumis melo][more]
gi|778712231|ref|XP_011656867.1|1.0e-2883.13PREDICTED: uncharacterized protein LOC101214960 isoform X1 [Cucumis sativus][more]
gi|778712235|ref|XP_011656868.1|6.7e-2883.95PREDICTED: uncharacterized protein LOC101214960 isoform X2 [Cucumis sativus][more]
gi|694424158|ref|XP_009339857.1|7.0e-0944.59PREDICTED: uncharacterized protein LOC103932041 [Pyrus x bretschneideri][more]
gi|657968044|ref|XP_008375716.1|9.1e-0944.59PREDICTED: uncharacterized protein LOC103438950 [Malus domestica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU36710watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU67098watermelon EST collection version 2.0transcribed_cluster
WMU68246watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006672Cla006672.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU36710WMU36710transcribed_cluster
WMU68246WMU68246transcribed_cluster
WMU67098WMU67098transcribed_cluster