Cla006663 (gene) Watermelon (97103) v1

Overview
NameCla006663
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 2824257 .. 2824523 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGATGGTTCTTTCAGGGGATAAAGCAGCAATAGAATGCATGAAGTTATCACCTTCAAAGCCAGTTGAAGAGAGAGAAACTGATAGATCCAAAAGATCAAACAAATATAAGAGGAGAAAGAAGCAGCTGAAGAGAGTAGAAAAGTTGAAAAAAGTTTCATGGAAAGTGGTTGATGATGATCATAAGAAAGTTAAAGGAAACAATGGTGTTTTCAGTTCAGATTATGAACATGCAAGGACTCATCCTCCTTCTCACAACTAA

mRNA sequence

ATGGGGAAGATGGTTCTTTCAGGGGATAAAGCAGCAATAGAATGCATGAAGTTATCACCTTCAAAGCCAGTTGAAGAGAGAGAAACTGATAGATCCAAAAGATCAAACAAATATAAGAGGAGAAAGAAGCAGCTGAAGAGAGTAGAAAAGTTGAAAAAAGTTTCATGGAAAGTGGTTGATGATGATCATAAGAAAGTTAAAGGAAACAATGGTGTTTTCAGTTCAGATTATGAACATGCAAGGACTCATCCTCCTTCTCACAACTAA

Coding sequence (CDS)

ATGGGGAAGATGGTTCTTTCAGGGGATAAAGCAGCAATAGAATGCATGAAGTTATCACCTTCAAAGCCAGTTGAAGAGAGAGAAACTGATAGATCCAAAAGATCAAACAAATATAAGAGGAGAAAGAAGCAGCTGAAGAGAGTAGAAAAGTTGAAAAAAGTTTCATGGAAAGTGGTTGATGATGATCATAAGAAAGTTAAAGGAAACAATGGTGTTTTCAGTTCAGATTATGAACATGCAAGGACTCATCCTCCTTCTCACAACTAA

Protein sequence

MGKMVLSGDKAAIECMKLSPSKPVEERETDRSKRSNKYKRRKKQLKRVEKLKKVSWKVVDDDHKKVKGNNGVFSSDYEHARTHPPSHN
Homology
[Close]
BLAST of Cla006663 vs. TrEMBL
Match: A0A0A0KA38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109655 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-25
Identity = 66/93 (70.97%), Postives = 77/93 (82.80%), Query Frame = 1 

Query: 1  MGKMVLSGDKAAIECMKLSPSKPVEERETDRSKRSNKYKR-RKKQLKRV--EKLKKVSWK 60
          MGKMV+S ++AAIECMKLS  KP EE E+  SKR  KYKR R++QLKR+  ++L+KV WK
Sbjct: 1  MGKMVISREEAAIECMKLSSPKPAEEEESFGSKRQ-KYKRIRREQLKRLIRDQLEKVPWK 60

Query: 61 VV--DDDHKKVKGNNGVFSSDYEHARTHPPSHN 89
          V   DDDHKKVKGN+GVFSSDYEHARTHPPSHN
Sbjct: 61 VPHDDDDHKKVKGNDGVFSSDYEHARTHPPSHN 92

[Close]
BLAST of Cla006663 vs. NCBI nr
Match: gi|700191366|gb|KGN46570.1| (hypothetical protein Csa_6G109655 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-25
Identity = 66/93 (70.97%), Postives = 77/93 (82.80%), Query Frame = 1 

Query: 1  MGKMVLSGDKAAIECMKLSPSKPVEERETDRSKRSNKYKR-RKKQLKRV--EKLKKVSWK 60
          MGKMV+S ++AAIECMKLS  KP EE E+  SKR  KYKR R++QLKR+  ++L+KV WK
Sbjct: 1  MGKMVISREEAAIECMKLSSPKPAEEEESFGSKRQ-KYKRIRREQLKRLIRDQLEKVPWK 60

Query: 61 VV--DDDHKKVKGNNGVFSSDYEHARTHPPSHN 89
          V   DDDHKKVKGN+GVFSSDYEHARTHPPSHN
Sbjct: 61 VPHDDDDHKKVKGNDGVFSSDYEHARTHPPSHN 92

The following BLAST results are available for this feature:
BLAST of Cla006663 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA38_CUCSA2.0e-2570.97Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109655 PE=4 SV=1[more]
BLAST of Cla006663 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191366|gb|KGN46570.1|2.9e-2570.97hypothetical protein Csa_6G109655 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU13092watermelon EST collection version 2.0transcribed_cluster
WMU28316watermelon EST collection version 2.0transcribed_cluster
WMU59872watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006663Cla006663.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU28316WMU28316transcribed_cluster
WMU13092WMU13092transcribed_cluster
WMU59872WMU59872transcribed_cluster