Cla006618 (gene) Watermelon (97103) v1

NameCla006618
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionMulti-copper oxidase type I family protein (AHRD V1 *-** Q9SFF2_ARATH); contains Interpro domain(s) IPR011707 Multicopper oxidase, type 3
LocationChr11 : 2137927 .. 2139037 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACAGAGCGTGAGGAGCTTCGATACGAAGGAGGAAGGGGTGGGAAGTTTCAGAAAAGGCCTATCAGAAGGTCGCATACGACGCCGTATGATCGACCGCCGACTGCTCTGAGGAACTCTGCTGGAAAAGGATGGTTTTCTAAGCTTGTCGATCCGGCACAGAAGCTAATCACCTCCAGTGCGCACCGGCTGTTTTCTAGTGTGTTTCGTAAACGCCTTCCCCCTCCGCCGCCGTCATTGCCACTTTCTCGAGGTTTTTGTTTTTAATTTTTCGTTTTTTGGTTTTTAATTGCAAGGTTCTCTTACCGGGTGGTAGCATTGTTTTTTGGGGATTTCGTTTTCCGCATATTTTCTGCTTGTTTATTTGATTTTAGAGGGTGCTGGCTGAAGATATCGTTACTATTATTTCAAATTCGATTTTTTTTTTTAGCGAGGGTGTTCTTATAATCGTGGGATTTTTTCATCTTTGTCTTGGTGGAACCTGGATTTATCATTTTGTATGGTTTTCGGTTTGTTGAAGCTATTCTGTTTGATTTAGGGCTTCATTTCTTTAAATGTCATTACTTCACGTGGTTTTGTGCTTCATGTCCTTCAAACATGTAAAAGTGCTTTAGCGCTTACTGGTCGAATTATATTGAGTCTGCTTGGAATGTTGTGTTTGTATGTTCACTCACTTCCTTGTTCTTGGTTTTGAGCTTCAGCTGCATCAATGGTGAAGACCCATATAGGTTTTTTACCTGGAATATCACATATGGAGACATATGGCCTCTTGGAGTAAAGCAACAGGTATTATATTTATATCAATGTAACAGCCATTTTCTTGTTTGGCTTGAAGATGTATAATCCTCCATTGTGTTACTGATTCTTTTTTCAGGGTATTTTGATTAATGGGCAATTTCCAGGGCCACAGATTGAGGCAGTTACTAATGAGAACTTGATTATCAATGTTTTTAATAGTTTGGATGAGCCTTTCTTGATCTCCTGGTTGGTTATCTTTTTCTTTTTTTTGCTTTCTTCCATTCTTGCTCACAACTTATATGAAGAAATGCTTCCTCTGTCTCGTTTGGTTGGATTCATGATGCTTGTAATCAACCCATTATGGTGTTAA

mRNA sequence

ATGGCGACAGAGCGTGAGGAGCTTCGATACGAAGGAGGAAGGGGTGGGAAGTTTCAGAAAAGGCCTATCAGAAGGTCGCATACGACGCCGTATGATCGACCGCCGACTGCTCTGAGGAACTCTGCTGGAAAAGGATGGTTTTCTAAGCTTGTCGATCCGGCACAGAAGCTAATCACCTCCAGTGCGCACCGGCTGTTTTCTAGTGTGTTTCGTAAACGCCTTCCCCCTCCGCCGCCGTCATTGCCACTTTCTCGAGACCCATATAGGTTTTTTACCTGGAATATCACATATGGAGACATATGGCCTCTTGGAGTAAAGCAACAGGGTATTTTGATTAATGGGCAATTTCCAGGGCCACAGATTGAGGCAGTTACTAATGAGAACTTGATTATCAATGTTTTTAATAGTTTGGATGAGCCTTTCTTGATCTCCTGGTTGGTTATCTTTTTCTTTTTTTTGCTTTCTTCCATTCTTGCTCACAACTTATATGAAGAAATGCTTCCTCTGTCTCGTTTGGTTGGATTCATGATGCTTGTAATCAACCCATTATGGTGTTAA

Coding sequence (CDS)

ATGGCGACAGAGCGTGAGGAGCTTCGATACGAAGGAGGAAGGGGTGGGAAGTTTCAGAAAAGGCCTATCAGAAGGTCGCATACGACGCCGTATGATCGACCGCCGACTGCTCTGAGGAACTCTGCTGGAAAAGGATGGTTTTCTAAGCTTGTCGATCCGGCACAGAAGCTAATCACCTCCAGTGCGCACCGGCTGTTTTCTAGTGTGTTTCGTAAACGCCTTCCCCCTCCGCCGCCGTCATTGCCACTTTCTCGAGACCCATATAGGTTTTTTACCTGGAATATCACATATGGAGACATATGGCCTCTTGGAGTAAAGCAACAGGGTATTTTGATTAATGGGCAATTTCCAGGGCCACAGATTGAGGCAGTTACTAATGAGAACTTGATTATCAATGTTTTTAATAGTTTGGATGAGCCTTTCTTGATCTCCTGGTTGGTTATCTTTTTCTTTTTTTTGCTTTCTTCCATTCTTGCTCACAACTTATATGAAGAAATGCTTCCTCTGTCTCGTTTGGTTGGATTCATGATGCTTGTAATCAACCCATTATGGTGTTAA

Protein sequence

MATEREELRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWFSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRDPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDEPFLISWLVIFFFFLLSSILAHNLYEEMLPLSRLVGFMMLVINPLWC
BLAST of Cla006618 vs. Swiss-Prot
Match: ASOL_TOBAC (L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.0e-21
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1

Query: 83  LSRDPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDEPFL 142
           ++ DPY +F WN+TYG I PLGV QQGILINGQFPGP+I   +N N+++NVFN+LDEPFL
Sbjct: 20  IAEDPYLYFNWNVTYGTIAPLGVPQQGILINGQFPGPRINCTSNNNIVVNVFNNLDEPFL 79

Query: 143 ISW 146
            +W
Sbjct: 80  FTW 82

BLAST of Cla006618 vs. Swiss-Prot
Match: ASOL_BRANA (L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.1e-18
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 1

Query: 84  SRDPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDEPFLI 143
           + DPY    WN+TYG   PLGV QQ ILINGQFPGP I + +N N+IINVFN+LDEPFL+
Sbjct: 23  AEDPYFHHVWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNVIINVFNNLDEPFLL 82

Query: 144 SW 146
           +W
Sbjct: 83  TW 84

BLAST of Cla006618 vs. Swiss-Prot
Match: NUP1_ARATH (Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana GN=NUP1 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-14
Identity = 42/69 (60.87%), Postives = 46/69 (66.67%), Query Frame = 1

Query: 13 GRGGKFQKRPIRRSHTTPYDRPPTALRNSA-------GKGWFSKLVDPAQKLITSSAHRL 72
          G GGKF+K   RRS  TPYDRP T++RN+        G GW SKLVDPAQ+LIT SA RL
Sbjct: 18 GTGGKFRKPTARRSQKTPYDRPTTSVRNAGLGGGDVRGGGWLSKLVDPAQRLITYSAQRL 77

Query: 73 FSSVFRKRL 75
          F S+ RKRL
Sbjct: 78 FGSLSRKRL 86

BLAST of Cla006618 vs. Swiss-Prot
Match: SKU5_ARATH (Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1

Query: 80  SLPLSRDPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDE 139
           S   + DPY F+ + ++Y    PLGV QQ I ING+FPGP I   TNENL++NV N LDE
Sbjct: 16  SFCFAADPYSFYNFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNENLVVNVRNKLDE 75

Query: 140 PFLISW 146
             L+ W
Sbjct: 76  GLLLHW 81

BLAST of Cla006618 vs. Swiss-Prot
Match: SKS1_ARATH (Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-12
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1

Query: 80  SLPLSRDPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDE 139
           ++  + DP+  + + ++Y    PLGV QQ I +NGQFPGP + A TN N+++NVFN LDE
Sbjct: 20  AVSFAADPFVSYDFRVSYLTASPLGVPQQVIAVNGQFPGPLLNATTNYNVVVNVFNHLDE 79

Query: 140 PFLISW 146
           P L++W
Sbjct: 80  PLLLTW 85

BLAST of Cla006618 vs. TrEMBL
Match: A0A0A0K9E4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046360 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-35
Identity = 73/86 (84.88%), Postives = 79/86 (91.86%), Query Frame = 1

Query: 1  MATEREELRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWFSKLVDPAQKLITS 60
          MATERE+++YEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSA KGW S LVDPA KLI S
Sbjct: 1  MATEREDVQYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAAKGWLSNLVDPAHKLINS 60

Query: 61 SAHRLFSSVFRKRLPPPPPSLPLSRD 87
          +AH LFS+VFRKRLPPPPPS PLSR+
Sbjct: 61 TAHWLFSTVFRKRLPPPPPSFPLSRE 86

BLAST of Cla006618 vs. TrEMBL
Match: M0U3A7_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-26
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 1

Query: 79  PSLPLSRDPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLD 138
           P   L  DPYRFFTWN+TYGDIWP+GVKQQGILINGQFPGPQIEAVTN+NLIINVFNSL 
Sbjct: 19  PYCVLGDDPYRFFTWNVTYGDIWPMGVKQQGILINGQFPGPQIEAVTNDNLIINVFNSLP 78

Query: 139 EPFLISW 146
           EPFL+SW
Sbjct: 79  EPFLLSW 85

BLAST of Cla006618 vs. TrEMBL
Match: A0A0A0K1K9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G043570 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-26
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 1

Query: 86  DPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDEPFLISW 145
           DPYRF  WNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDEPFLISW
Sbjct: 26  DPYRFLNWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDEPFLISW 85

BLAST of Cla006618 vs. TrEMBL
Match: M0SSN7_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-26
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 1

Query: 80  SLPLSRDPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDE 139
           S  L  DPYRFFTWNITYGDIWP+GVKQQGILINGQFPGPQIEAVTN+N+IINVFNSL E
Sbjct: 18  SAVLGDDPYRFFTWNITYGDIWPMGVKQQGILINGQFPGPQIEAVTNDNVIINVFNSLPE 77

Query: 140 PFLISW 146
           PFLISW
Sbjct: 78  PFLISW 83

BLAST of Cla006618 vs. TrEMBL
Match: M0TDG9_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-25
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 1

Query: 83  LSRDPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDEPFL 142
           L   PYRFFTWNITYGDIWP+GVKQQGILINGQFPGPQIEAVTN+N+I+NVFNSL EPFL
Sbjct: 22  LGDSPYRFFTWNITYGDIWPMGVKQQGILINGQFPGPQIEAVTNDNVIVNVFNSLPEPFL 81

Query: 143 ISW 146
           ISW
Sbjct: 82  ISW 84

BLAST of Cla006618 vs. NCBI nr
Match: gi|659113533|ref|XP_008456625.1| (PREDICTED: uncharacterized protein DDB_G0274915-like [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 8.1e-38
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 1

Query: 1  MATEREELRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWFSKLVDPAQKLITS 60
          MATEREE++YEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSA KGW SKLVDPAQKLITS
Sbjct: 1  MATEREEVQYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAAKGWLSKLVDPAQKLITS 60

Query: 61 SAHRLFSSVFRKRLPPPPPSLPLSRD 87
          SAHRLFS+VFRKRLPPPPPS  LSR+
Sbjct: 61 SAHRLFSTVFRKRLPPPPPSFSLSRE 86

BLAST of Cla006618 vs. NCBI nr
Match: gi|778710463|ref|XP_011656578.1| (PREDICTED: nuclear pore complex protein NUP1-like [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 2.2e-35
Identity = 73/86 (84.88%), Postives = 79/86 (91.86%), Query Frame = 1

Query: 1  MATEREELRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWFSKLVDPAQKLITS 60
          MATERE+++YEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSA KGW S LVDPA KLI S
Sbjct: 1  MATEREDVQYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAAKGWLSNLVDPAHKLINS 60

Query: 61 SAHRLFSSVFRKRLPPPPPSLPLSRD 87
          +AH LFS+VFRKRLPPPPPS PLSR+
Sbjct: 61 TAHWLFSTVFRKRLPPPPPSFPLSRE 86

BLAST of Cla006618 vs. NCBI nr
Match: gi|659110852|ref|XP_008455444.1| (PREDICTED: L-ascorbate oxidase homolog [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 7.6e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query: 86  DPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDEPFLISW 145
           DPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDEPFLISW
Sbjct: 26  DPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDEPFLISW 85

BLAST of Cla006618 vs. NCBI nr
Match: gi|449453507|ref|XP_004144498.1| (PREDICTED: L-ascorbate oxidase homolog [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 1

Query: 86  DPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDEPFLISW 145
           DPYRF  WNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDEPFLISW
Sbjct: 26  DPYRFLNWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSLDEPFLISW 85

BLAST of Cla006618 vs. NCBI nr
Match: gi|743793209|ref|XP_010923873.1| (PREDICTED: L-ascorbate oxidase homolog [Elaeis guineensis])

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1

Query: 79  PSLPL-SRDPYRFFTWNITYGDIWPLGVKQQGILINGQFPGPQIEAVTNENLIINVFNSL 138
           PSLP+   DPYRFFTWNI YGDIWPLGVKQQGILINGQFPGPQIEAVTN+N+IINVFN+L
Sbjct: 18  PSLPVRGEDPYRFFTWNIAYGDIWPLGVKQQGILINGQFPGPQIEAVTNDNIIINVFNNL 77

Query: 139 DEPFLISW 146
            EPFL+SW
Sbjct: 78  PEPFLLSW 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ASOL_TOBAC9.0e-2165.08L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1[more]
ASOL_BRANA7.1e-1864.52L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1[more]
NUP1_ARATH1.6e-1460.87Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana GN=NUP1 PE=1 SV=1[more]
SKU5_ARATH1.2e-1251.52Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1[more]
SKS1_ARATH2.0e-1246.97Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K9E4_CUCSA1.5e-3584.88Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046360 PE=4 SV=1[more]
M0U3A7_MUSAM1.0e-2685.07Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
A0A0A0K1K9_CUCSA1.0e-2696.67Uncharacterized protein OS=Cucumis sativus GN=Csa_7G043570 PE=4 SV=1[more]
M0SSN7_MUSAM1.3e-2687.88Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
M0TDG9_MUSAM1.1e-2587.30Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659113533|ref|XP_008456625.1|8.1e-3890.70PREDICTED: uncharacterized protein DDB_G0274915-like [Cucumis melo][more]
gi|778710463|ref|XP_011656578.1|2.2e-3584.88PREDICTED: nuclear pore complex protein NUP1-like [Cucumis sativus][more]
gi|659110852|ref|XP_008455444.1|7.6e-28100.00PREDICTED: L-ascorbate oxidase homolog [Cucumis melo][more]
gi|449453507|ref|XP_004144498.1|1.4e-2696.67PREDICTED: L-ascorbate oxidase homolog [Cucumis sativus][more]
gi|743793209|ref|XP_010923873.1|1.4e-2685.29PREDICTED: L-ascorbate oxidase homolog [Elaeis guineensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008972Cupredoxin
IPR011707Cu-oxidase_3
Vocabulary: Molecular Function
TermDefinition
GO:0005507copper ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019852 L-ascorbic acid metabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005507 copper ion binding
molecular_function GO:0008447 L-ascorbate oxidase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006618Cla006618.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008972CupredoxinGENE3DG3DSA:2.60.40.420coord: 75..145
score: 2.8
IPR008972CupredoxinunknownSSF49503Cupredoxinscoord: 76..151
score: 6.84
IPR011707Multicopper oxidase, type 3PFAMPF07732Cu-oxidase_3coord: 95..145
score: 9.5
NoneNo IPR availablePANTHERPTHR11709MULTI-COPPER OXIDASEcoord: 86..145
score: 2.3
NoneNo IPR availablePANTHERPTHR11709:SF106SUBFAMILY NOT NAMEDcoord: 86..145
score: 2.3