Cla006476 (gene) Watermelon (97103) v1

Overview
NameCla006476
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRetroelement pol polyprotein-like (AHRD V1 *-*- Q9FZN9_ARATH)
LocationChr10 : 14187575 .. 14187982 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACAAGTTCCAATGAATCCGCTTGGAGACGATCCTCTTGTTCCCCCTCGGAATAATGTCCAACAAATTGGAGACCAACAACCACAACCTCATCCTCAACCTGCTGTTCAACCTCAAAATCCCAACTTCATTGCAGAAGATAATGATAGGGCAATTAGAGACTATGCAGCACTCATGTTCCAAACTCTTGACACAAGGATTCTTGATCCCCCTATCGAAGAAACAACGTTTGAAATGAAACCTTGGATGTTTCAAATGTTGAATTCTTCTGGACAATTCCCTGGACTACCCCATGAAGATCCCCAAAAACATCTCGATCTTTTTATGAGAATACGTTGTTCTTCCAAAACATATGGAGTTTCTGAGGAAGCATTTAAAATAAAATTGTTTCTTTATTCTTTGTAG

mRNA sequence

ATGCAACAAGTTCCAATGAATCCGCTTGGAGACGATCCTCTTGTTCCCCCTCGGAATAATGTCCAACAAATTGGAGACCAACAACCACAACCTCATCCTCAACCTGCTGTTCAACCTCAAAATCCCAACTTCATTGCAGAAGATAATGATAGGGCAATTAGAGACTATGCAGCACTCATGTTCCAAACTCTTGACACAAGGATTCTTGATCCCCCTATCGAAGAAACAACGTTTGAAATGAAACCTTGGATGTTTCAAATGTTGAATTCTTCTGGACAATTCCCTGGACTACCCCATGAAGATCCCCAAAAACATCTCGATCTTTTTATGAGAATACGTTGTTCTTCCAAAACATATGGAGTTTCTGAGGAAGCATTTAAAATAAAATTGTTTCTTTATTCTTTGTAG

Coding sequence (CDS)

ATGCAACAAGTTCCAATGAATCCGCTTGGAGACGATCCTCTTGTTCCCCCTCGGAATAATGTCCAACAAATTGGAGACCAACAACCACAACCTCATCCTCAACCTGCTGTTCAACCTCAAAATCCCAACTTCATTGCAGAAGATAATGATAGGGCAATTAGAGACTATGCAGCACTCATGTTCCAAACTCTTGACACAAGGATTCTTGATCCCCCTATCGAAGAAACAACGTTTGAAATGAAACCTTGGATGTTTCAAATGTTGAATTCTTCTGGACAATTCCCTGGACTACCCCATGAAGATCCCCAAAAACATCTCGATCTTTTTATGAGAATACGTTGTTCTTCCAAAACATATGGAGTTTCTGAGGAAGCATTTAAAATAAAATTGTTTCTTTATTCTTTGTAG

Protein sequence

MQQVPMNPLGDDPLVPPRNNVQQIGDQQPQPHPQPAVQPQNPNFIAEDNDRAIRDYAALMFQTLDTRILDPPIEETTFEMKPWMFQMLNSSGQFPGLPHEDPQKHLDLFMRIRCSSKTYGVSEEAFKIKLFLYSL
Homology
[Close]
BLAST of Cla006476 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 51/100 (51.00%), Postives = 65/100 (65.00%), Query Frame = 1 

Query: 36  AVQPQNPNFIAEDNDRAIRDYAALMFQTLDTRILDPPIEETTFEMKPWMFQMLNSSGQFP 95
           A Q  NP  +A+D  RAIR+YAA MF  L+  I+ P I+   FE+KP MFQML + GQF 
Sbjct: 6   AQQIVNPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFS 65

Query: 96  GLPHEDPQKHLDLFMRIRCSSKTYGVSEEAFKIKLFLYSL 136
           G+P EDP  HL  F+ +  S K  GVSEE  ++KLF +SL
Sbjct: 66  GMPTEDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSL 105

[Close]
BLAST of Cla006476 vs. TrEMBL
Match: U5CUK7_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00007640 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.2e-17
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 1 

Query: 41  NPNFIAEDNDRAIRDYAALMFQTLDTRILDPPIEETTFEMKPWMFQMLNSSGQFPGLPHE 100
           NP  +A+D  RAIR+YAA MF  L++ I+ P I+   FE+KP MFQML + GQF G P E
Sbjct: 13  NPIALADDRARAIREYAAPMFNELNSGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 72

Query: 101 DPQKHLDLFMRIRCSSKTYGVSEEAFKIKLFLYSL 136
           DP  H+  F+ +  S K  GVSEEA ++KLF +SL
Sbjct: 73  DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSL 107

[Close]
BLAST of Cla006476 vs. TrEMBL
Match: W9RHB3_9ROSA (Putative disease resistance RPP13-like protein 1 OS=Morus notabilis GN=L484_000983 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-14
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 1 

Query: 36   AVQPQNPNFIAEDNDRAIRDYAALMFQTLDTRILDPPIEETTFEMKPWMFQMLNSSGQFP 95
            A++P    F+ +D DRAIRD+A  +   L+  I+ P IE   FE+KP MFQML   GQF 
Sbjct: 1389 ALEPAQRPFVVDDRDRAIRDFAVPVLDGLNPVIVRPNIEAPHFELKPVMFQMLQIVGQFS 1448

Query: 96   GLPHEDPQKHLDLFMRIRCSSKTYGVSEEAFKIKLFLYSL 136
            G+  +DP +HL LFM +    K  GV  E  ++ LF +SL
Sbjct: 1449 GMATDDPHQHLRLFMEVSDIFKLPGVPSETLRLTLFPFSL 1488

[Close]
BLAST of Cla006476 vs. TrEMBL
Match: A0A061EW79_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-09
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 1 

Query: 47  EDNDRAIRDYAALMFQTLDTRILDPPIEETTFEMKPWMFQMLNSSGQFPGLPHEDPQKHL 106
           E+  + +RDYA    Q L + I  P I+   FE+KP + QM+ +  QF GLP++DP  H+
Sbjct: 16  EEETKPLRDYAVRQLQNLHSSIRRPLIQANIFEIKPSIIQMIQTVVQFGGLPNDDPNAHI 75

Query: 107 DLFMRIRCSSKTYGVSEEAFKIKLFLYSL 136
             F+ I  + K  GV+++A +++LF +SL
Sbjct: 76  VNFLEICDTFKANGVTDDAIRLRLFPFSL 104

[Close]
BLAST of Cla006476 vs. TrEMBL
Match: A0A072UTL4_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g012140 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-08
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = 1 

Query: 41  NPNFIAEDND--RAIRDYAALMFQTLDTRILDPPIEETTFEMKPWMFQMLNSSGQFPGLP 100
           N N +  +ND  R+IR+Y      +L T I+   +    FE KP MFQML + GQF G+ 
Sbjct: 4   NNNTLGMENDKGRSIREYVVFDLTSLHTSIVKSEVTTAQFEFKPIMFQMLRTIGQFSGVV 63

Query: 101 HEDPQKHLDLFMRIRCSSKTYGVSEEAFKIKLFLY 134
             DP  HL+ F  +  + K   + +++FK++LF Y
Sbjct: 64  IYDPYLHLNQFTEVAENFKIPCIEDDSFKLRLFPY 98

[Close]
BLAST of Cla006476 vs. NCBI nr
Match: gi|548830333|gb|ERM93404.1| (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 51/100 (51.00%), Postives = 65/100 (65.00%), Query Frame = 1 

Query: 36  AVQPQNPNFIAEDNDRAIRDYAALMFQTLDTRILDPPIEETTFEMKPWMFQMLNSSGQFP 95
           A Q  NP  +A+D  RAIR+YAA MF  L+  I+ P I+   FE+KP MFQML + GQF 
Sbjct: 6   AQQIVNPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFS 65

Query: 96  GLPHEDPQKHLDLFMRIRCSSKTYGVSEEAFKIKLFLYSL 136
           G+P EDP  HL  F+ +  S K  GVSEE  ++KLF +SL
Sbjct: 66  GMPTEDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSL 105

[Close]
BLAST of Cla006476 vs. NCBI nr
Match: gi|548830393|gb|ERM93434.1| (hypothetical protein AMTR_s03373p00007640 [Amborella trichopoda])

HSP 1 Score: 95.5 bits (236), Expect = 7.5e-17
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 1 

Query: 41  NPNFIAEDNDRAIRDYAALMFQTLDTRILDPPIEETTFEMKPWMFQMLNSSGQFPGLPHE 100
           NP  +A+D  RAIR+YAA MF  L++ I+ P I+   FE+KP MFQML + GQF G P E
Sbjct: 13  NPIALADDRARAIREYAAPMFNELNSGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 72

Query: 101 DPQKHLDLFMRIRCSSKTYGVSEEAFKIKLFLYSL 136
           DP  H+  F+ +  S K  GVSEEA ++KLF +SL
Sbjct: 73  DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSL 107

[Close]
BLAST of Cla006476 vs. NCBI nr
Match: gi|985468228|ref|XP_015389924.1| (PREDICTED: uncharacterized protein LOC107178820 [Citrus sinensis])

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1 

Query: 45  IAEDNDRAIRDYAALMFQTLDTRILDPPIEETTFEMKPWMFQMLNSSGQFPGLPHEDPQK 104
           +A D DRAI DYA L  Q +   I+ P  E   FEMKP MFQML + GQF GLP++DP  
Sbjct: 1   MANDRDRAIMDYAVLTLQVVHPGIIRPEAEAANFEMKPVMFQMLQTVGQFNGLPNKDPHL 60

Query: 105 HLDLFMRIRCSSKTYGVSEEAFKIKLFLYSL 136
           HL LF+ +  + K  G +++  +I+LF YSL
Sbjct: 61  HLKLFLEVNDAFKIAGATQDTLRIRLFPYSL 91

[Close]
BLAST of Cla006476 vs. NCBI nr
Match: gi|985457975|ref|XP_015387726.1| (PREDICTED: uncharacterized protein LOC107177802 [Citrus sinensis])

HSP 1 Score: 90.1 bits (222), Expect = 3.2e-15
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 1 

Query: 38  QPQNPNFI--AEDNDRAIRDYAALMFQTLDTRILDPPIEETTFEMKPWMFQMLNSSGQFP 97
           Q  N N I  A D DRAIRDYA L  Q + + I+ P ++   FE+KP MFQML + GQF 
Sbjct: 33  QRGNNNIIHMANDRDRAIRDYAVLTPQAIHSGIVRPDVQADNFELKPMMFQMLQTVGQFN 92

Query: 98  GLPHEDPQKHLDLFMRIRCSSKTYGVSEEAFKIKLFLYSL 136
           GLP EDP  HL LF+ +  + K    S+EA +++LF +SL
Sbjct: 93  GLPSEDPHLHLKLFLDVSDAFKIARASQEALRLRLFPFSL 132

[Close]
BLAST of Cla006476 vs. NCBI nr
Match: gi|985468230|ref|XP_015389925.1| (PREDICTED: uncharacterized protein LOC107178821 [Citrus sinensis])

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-14
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 45  IAEDNDRAIRDYAALMFQTLDTRILDPPIEETTFEMKPWMFQMLNSSGQFPGLPHEDPQK 104
           +A D DRAI DYA L  Q +   I+    E   FEMKP MFQML + GQF GLP++DP  
Sbjct: 1   MANDRDRAIMDYAVLTLQVVHPGIIRHEAEAANFEMKPVMFQMLQTVGQFNGLPNKDPHL 60

Query: 105 HLDLFMRIRCSSKTYGVSEEAFKIKLFLYSL 136
           HL LF+ +  + K  G +++  +I+LF YSL
Sbjct: 61  HLKLFLEVNDAFKIAGATQDTLRIRLFPYSL 91

The following BLAST results are available for this feature:
BLAST of Cla006476 vs. TrEMBL
Match NameE-valueIdentityDescription
U5CUI2_AMBTC1.1e-1751.00Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=... [more]
U5CUK7_AMBTC5.2e-1751.58Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00007640 PE=4 SV=... [more]
W9RHB3_9ROSA7.1e-1444.00Putative disease resistance RPP13-like protein 1 OS=Morus notabilis GN=L484_0009... [more]
A0A061EW79_THECC1.8e-0938.20Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1[more]
A0A072UTL4_MEDTR7.6e-0836.84Uncharacterized protein OS=Medicago truncatula GN=MTR_3g012140 PE=4 SV=1[more]
BLAST of Cla006476 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|548830333|gb|ERM93404.1|1.5e-1751.00hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda][more]
gi|548830393|gb|ERM93434.1|7.5e-1751.58hypothetical protein AMTR_s03373p00007640 [Amborella trichopoda][more]
gi|985468228|ref|XP_015389924.1|2.4e-1548.35PREDICTED: uncharacterized protein LOC107178820 [Citrus sinensis][more]
gi|985457975|ref|XP_015387726.1|3.2e-1548.00PREDICTED: uncharacterized protein LOC107177802 [Citrus sinensis][more]
gi|985468230|ref|XP_015389925.1|2.7e-1447.25PREDICTED: uncharacterized protein LOC107178821 [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006476Cla006476.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006476Cucurbita pepo (Zucchini)cpewmB204
Cla006476Cucurbita pepo (Zucchini)cpewmB248
Cla006476Cucurbita pepo (Zucchini)cpewmB382
Cla006476Bottle gourd (USVL1VR-Ls)lsiwmB240
Cla006476Bottle gourd (USVL1VR-Ls)lsiwmB245
Cla006476Cucumber (Gy14) v2cgybwmB275
Cla006476Cucumber (Gy14) v2cgybwmB538
Cla006476Melon (DHL92) v3.6.1medwmB214
Cla006476Melon (DHL92) v3.6.1medwmB483
Cla006476Silver-seed gourdcarwmB0283
Cla006476Silver-seed gourdcarwmB0287
Cla006476Silver-seed gourdcarwmB0366
Cla006476Cucumber (Chinese Long) v3cucwmB307
Cla006476Cucumber (Chinese Long) v3cucwmB602
Cla006476Watermelon (97103) v2wmwmbB063
Cla006476Watermelon (97103) v2wmwmbB051
Cla006476Wax gourdwgowmB007
Cla006476Cucumber (Gy14) v1cgywmB421
Cla006476Cucumber (Gy14) v1cgywmB597
Cla006476Cucurbita maxima (Rimu)cmawmB293
Cla006476Cucurbita maxima (Rimu)cmawmB653
Cla006476Cucurbita moschata (Rifu)cmowmB287
Cla006476Cucurbita moschata (Rifu)cmowmB478
Cla006476Cucurbita moschata (Rifu)cmowmB648
Cla006476Wild cucumber (PI 183967)cpiwmB298
Cla006476Wild cucumber (PI 183967)cpiwmB594
Cla006476Melon (DHL92) v3.5.1mewmB217
Cla006476Melon (DHL92) v3.5.1mewmB497
Cla006476Watermelon (Charleston Gray)wcgwmB051
Cla006476Watermelon (Charleston Gray)wcgwmB176
Cla006476Cucumber (Chinese Long) v2cuwmB295
Cla006476Cucumber (Chinese Long) v2cuwmB297
Cla006476Cucumber (Chinese Long) v2cuwmB575