Cla006420 (gene) Watermelon (97103) v1

Overview
NameCla006420
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr10 : 15112761 .. 15112994 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATAATCTTCAATAGCCTAGTCCACCACATCCCGTTGAAGAAGGTACACGTTGAGAACAGTAGAGTTGAGTCCATGTACTTCAACTTCAATAGACATATTATGAGGTTCTCCAAGGATGAGTTCCTACTGGTGATTGAACTTTGGAGGTCACCTGTGATTGTTCCTCGCACTGTTGAAGTGACCAGGGCACTTCAAACGAACTACTTCCACAATTTAAGTGGGACATAG

mRNA sequence

ATGGACATAATCTTCAATAGCCTAGTCCACCACATCCCGTTGAAGAAGGTACACGTTGAGAACAGTAGAGTTGAGTCCATGTACTTCAACTTCAATAGACATATTATGAGGTTCTCCAAGGATGAGTTCCTACTGGTGATTGAACTTTGGAGGTCACCTGTGATTGTTCCTCGCACTGTTGAAGTGACCAGGGCACTTCAAACGAACTACTTCCACAATTTAAGTGGGACATAG

Coding sequence (CDS)

ATGGACATAATCTTCAATAGCCTAGTCCACCACATCCCGTTGAAGAAGGTACACGTTGAGAACAGTAGAGTTGAGTCCATGTACTTCAACTTCAATAGACATATTATGAGGTTCTCCAAGGATGAGTTCCTACTGGTGATTGAACTTTGGAGGTCACCTGTGATTGTTCCTCGCACTGTTGAAGTGACCAGGGCACTTCAAACGAACTACTTCCACAATTTAAGTGGGACATAG

Protein sequence

MDIIFNSLVHHIPLKKVHVENSRVESMYFNFNRHIMRFSKDEFLLVIELWRSPVIVPRTVEVTRALQTNYFHNLSGT
Homology
[Close]
BLAST of Cla006420 vs. TrEMBL
Match: A0A0A0KM59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G141180 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-08
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 1   MDIIFNS-LVHHIPLKKVHVENSRVESMYFNFNRHIMRFSKDEFLLVIELWRSPVIVPRT 60
           MD++F+S LVHHI L++V  ++ R ++M FN N  I  FSK+EFLLV  LW SP      
Sbjct: 54  MDLVFSSPLVHHILLREV--KDERPDAMSFNLNGIIATFSKEEFLLVTGLWPSPTKPVPR 113

Query: 61  VEVTRALQTNYFHN 74
           VE T++L T YF N
Sbjct: 114 VEATKSLGTKYFGN 125

[Close]
BLAST of Cla006420 vs. NCBI nr
Match: gi|659074245|ref|XP_008437500.1| (PREDICTED: uncharacterized protein LOC103482899 isoform X1 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-08
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 1 

Query: 1   MDIIFNS-LVHHIPLKKVHVENSRVESMYFNFNRHIMRFSKDEFLLVIELWRSPVIVPRT 60
           MD++F+S LVHHI L++V  ++ R ++M FN N  I  FSK+EFLLV  LW SP    R 
Sbjct: 137 MDLVFSSPLVHHILLREV--KDERPDAMSFNLNGIIATFSKEEFLLVTGLWPSPTKSVRR 196

Query: 61  VEVTRALQTNYFHN 74
           VE +++L T YF N
Sbjct: 197 VEASKSLGTKYFGN 208

[Close]
BLAST of Cla006420 vs. NCBI nr
Match: gi|659074247|ref|XP_008437501.1| (PREDICTED: uncharacterized protein LOC103482899 isoform X2 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-08
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 1 

Query: 1   MDIIFNS-LVHHIPLKKVHVENSRVESMYFNFNRHIMRFSKDEFLLVIELWRSPVIVPRT 60
           MD++F+S LVHHI L++V  ++ R ++M FN N  I  FSK+EFLLV  LW SP    R 
Sbjct: 135 MDLVFSSPLVHHILLREV--KDERPDAMSFNLNGIIATFSKEEFLLVTGLWPSPTKSVRR 194

Query: 61  VEVTRALQTNYFHN 74
           VE +++L T YF N
Sbjct: 195 VEASKSLGTKYFGN 206

[Close]
BLAST of Cla006420 vs. NCBI nr
Match: gi|778699090|ref|XP_011654656.1| (PREDICTED: uncharacterized protein LOC105435430 isoform X1 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 8.1e-08
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 1   MDIIFNS-LVHHIPLKKVHVENSRVESMYFNFNRHIMRFSKDEFLLVIELWRSPVIVPRT 60
           MD++F+S LVHHI L++V  ++ R ++M FN N  I  FSK+EFLLV  LW SP      
Sbjct: 137 MDLVFSSPLVHHILLREV--KDERPDAMSFNLNGIIATFSKEEFLLVTGLWPSPTKPVPR 196

Query: 61  VEVTRALQTNYFHN 74
           VE T++L T YF N
Sbjct: 197 VEATKSLGTKYFGN 208

[Close]
BLAST of Cla006420 vs. NCBI nr
Match: gi|700194767|gb|KGN49944.1| (hypothetical protein Csa_5G141180 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 8.1e-08
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 1   MDIIFNS-LVHHIPLKKVHVENSRVESMYFNFNRHIMRFSKDEFLLVIELWRSPVIVPRT 60
           MD++F+S LVHHI L++V  ++ R ++M FN N  I  FSK+EFLLV  LW SP      
Sbjct: 54  MDLVFSSPLVHHILLREV--KDERPDAMSFNLNGIIATFSKEEFLLVTGLWPSPTKPVPR 113

Query: 61  VEVTRALQTNYFHN 74
           VE T++L T YF N
Sbjct: 114 VEATKSLGTKYFGN 125

[Close]
BLAST of Cla006420 vs. NCBI nr
Match: gi|778699094|ref|XP_011654657.1| (PREDICTED: uncharacterized protein LOC105435430 isoform X2 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 8.1e-08
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 1   MDIIFNS-LVHHIPLKKVHVENSRVESMYFNFNRHIMRFSKDEFLLVIELWRSPVIVPRT 60
           MD++F+S LVHHI L++V  ++ R ++M FN N  I  FSK+EFLLV  LW SP      
Sbjct: 135 MDLVFSSPLVHHILLREV--KDERPDAMSFNLNGIIATFSKEEFLLVTGLWPSPTKPVPR 194

Query: 61  VEVTRALQTNYFHN 74
           VE T++L T YF N
Sbjct: 195 VEATKSLGTKYFGN 206

The following BLAST results are available for this feature:
BLAST of Cla006420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM59_CUCSA5.6e-0850.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G141180 PE=4 SV=1[more]
BLAST of Cla006420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074245|ref|XP_008437500.1|3.6e-0850.00PREDICTED: uncharacterized protein LOC103482899 isoform X1 [Cucumis melo][more]
gi|659074247|ref|XP_008437501.1|3.6e-0850.00PREDICTED: uncharacterized protein LOC103482899 isoform X2 [Cucumis melo][more]
gi|778699090|ref|XP_011654656.1|8.1e-0850.00PREDICTED: uncharacterized protein LOC105435430 isoform X1 [Cucumis sativus][more]
gi|700194767|gb|KGN49944.1|8.1e-0850.00hypothetical protein Csa_5G141180 [Cucumis sativus][more]
gi|778699094|ref|XP_011654657.1|8.1e-0850.00PREDICTED: uncharacterized protein LOC105435430 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006420Cla006420.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006420Cucumber (Chinese Long) v3cucwmB300
Cla006420Cucumber (Chinese Long) v3cucwmB309
Cla006420Cucumber (Chinese Long) v3cucwmB602
Cla006420Watermelon (97103) v2wmwmbB063
Cla006420Watermelon (97103) v2wmwmbB051
Cla006420Wax gourdwgowmB007
Cla006420Watermelon (97103) v1wmwmB054
Cla006420Cucumber (Gy14) v1cgywmB115
Cla006420Cucumber (Gy14) v1cgywmB421
Cla006420Cucurbita maxima (Rimu)cmawmB293
Cla006420Cucurbita maxima (Rimu)cmawmB653
Cla006420Cucurbita moschata (Rifu)cmowmB287
Cla006420Cucurbita moschata (Rifu)cmowmB648
Cla006420Wild cucumber (PI 183967)cpiwmB291
Cla006420Wild cucumber (PI 183967)cpiwmB299
Cla006420Wild cucumber (PI 183967)cpiwmB594
Cla006420Melon (DHL92) v3.5.1mewmB217
Cla006420Melon (DHL92) v3.5.1mewmB496
Cla006420Melon (DHL92) v3.5.1mewmB497
Cla006420Watermelon (Charleston Gray)wcgwmB051
Cla006420Watermelon (Charleston Gray)wcgwmB176
Cla006420Cucumber (Chinese Long) v2cuwmB290
Cla006420Cucumber (Chinese Long) v2cuwmB575
Cla006420Cucurbita pepo (Zucchini)cpewmB204
Cla006420Cucurbita pepo (Zucchini)cpewmB382
Cla006420Bottle gourd (USVL1VR-Ls)lsiwmB240
Cla006420Bottle gourd (USVL1VR-Ls)lsiwmB245
Cla006420Cucumber (Gy14) v2cgybwmB269
Cla006420Cucumber (Gy14) v2cgybwmB276
Cla006420Cucumber (Gy14) v2cgybwmB538
Cla006420Melon (DHL92) v3.6.1medwmB214
Cla006420Melon (DHL92) v3.6.1medwmB483
Cla006420Silver-seed gourdcarwmB0287
Cla006420Silver-seed gourdcarwmB0366