Cla006412 (gene) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCGGCGCCTTCCGGAGAAGCTCTGGGATATCTGGGTTGTTGCATTTTCGCCATTTTTCTCAGTTGAGAAGTTCTAAGGCTTTCGAACCTACTGTGATCGTGAGGAAGCAAACTCAACAACCCATTCGGCCCTACTTTCGTCTGCCGGATTCTTTCAGGAAGACGAAGGAGGTGGTTGGTGTTTTTCCCTCGGTGCAACAGTCTTCTGTGTCATCGATTATTTCGGTTGTGAAGGTTGAGCTTCTTGAATGGTATTTGACGATGGTCAAATGTCGTCCTGTTCTTACCAAGAGTATCACTTCTGCGCTTATTTATACGGCTGCTGATTTGTCGTCTCAGGTGAATAATTTTGGAGTTGAAACTGCTTGTTTTGAGTCTGATTATTTAAAATCTCTGTTTCCTGGGCTCCTTTTTTGTGATGTCTTTTTAGCTTGTTTGGGAAGGAACTTTTCTTGGAAGAGTTGTTTTCTCTTTAATTTGATTGTTCTTAATGGCGAACTCTTTTTTTGTTCGAATACTGCTCTCAATTGGGAATCAAAATCCTTGTGTATGAATGCTGCTCTGTTTTTGTGTTTTCTTTGTTGGGGGTTTGTTGATAATGGGGGTCCTCATTTGGGCAGTTTTAAAGCAAAATGTTCTTTGGAGAGTCTTATTTTCCTCATCATTGCAACTTTTGTTCTTATTTACTACTATCAAACCTCTGCTCTCATTAGATGTTGTCCTTTTAAACGGTTCTCTGATTTGGGAATCAAATTTTCTTTCAGACCATTTCTCTGTCATCTTCAGAGCCATATGATTTAATTCGAACACTACGCATGGCTGGATATGGTATGTTGATTCTAGGGCCATCTCTCCATTACTGGTTCAACTTAATGTCGAAACTCTTCCCCAGCAAAGATCTCTTCTCCACCTTCAAGAAAATGGCCCTGGGCCAAAGTCTCTTTGGCCCTTCCATGACAGTCGTTTTCTTCTCCATGAATGCATTTCTCCAAGGTACAAGCTGTTTTTCACAACCTGCTTCACAGGTCTAAAACATAAGATGACTGAGAATGGTTTGGTTTCATTGAACATAGGTGAAAATGGTGATGAAATTATTGCCCGATTGAAACGGGACTTGCTTCCTACCATGCTCAATGGCGTTATGTACTGGCCAGTTTGTGATTTTATCACTTTTAGATTTGTCCCTGTTCATCTTCAAGTATGTTCTGTTCTCTCTTGATTCTTTTCTCTTCTCTTCTCTTCTTCTGTTGGCTTTGGTTTTGAGTGATGTTTTGGTGTTTGTTTGGTTGTTGTGCAGGCGTTGGTGAGCAATTCTTTTTCGTATGTGTGGACAGTTTACATGACATACATGGCGAGCCTTGAGAAAGCTGCCTCATGA ATGATCGGCGCCTTCCGGAGAAGCTCTGGGATATCTGGGTTGTTGCATTTTCGCCATTTTTCTCAGTTGAGAAGTTCTAAGGCTTTCGAACCTACTGTGATCGTGAGGAAGCAAACTCAACAACCCATTCGGCCCTACTTTCGTCTGCCGGATTCTTTCAGGAAGACGAAGGAGGTGGTTGGTGTTTTTCCCTCGGTGCAACAGTCTTCTGTGTCATCGATTATTTCGGTTGTGAAGGTTGAGCTTCTTGAATGGTATTTGACGATGGTCAAATGTCGTCCTGTTCTTACCAAGAGTATCACTTCTGCGCTTATTTATACGGCTGCTGATTTGTCGTCTCAGACCATTTCTCTGTCATCTTCAGAGCCATATGATTTAATTCGAACACTACGCATGGCTGGATATGGTATGTTGATTCTAGGGCCATCTCTCCATTACTGGTTCAACTTAATGTCGAAACTCTTCCCCAGCAAAGATCTCTTCTCCACCTTCAAGAAAATGGCCCTGGGCCAAAGTCTCTTTGGCCCTTCCATGACAGTCGTTTTCTTCTCCATGAATGCATTTCTCCAAGGTGAAAATGGTGATGAAATTATTGCCCGATTGAAACGGGACTTGCTTCCTACCATGCTCAATGGCGTTATGTACTGGCCAGTTTGTGATTTTATCACTTTTAGATTTGTCCCTGTTCATCTTCAAGCGTTGGTGAGCAATTCTTTTTCGTATGTGTGGACAGTTTACATGACATACATGGCGAGCCTTGAGAAAGCTGCCTCATGA ATGATCGGCGCCTTCCGGAGAAGCTCTGGGATATCTGGGTTGTTGCATTTTCGCCATTTTTCTCAGTTGAGAAGTTCTAAGGCTTTCGAACCTACTGTGATCGTGAGGAAGCAAACTCAACAACCCATTCGGCCCTACTTTCGTCTGCCGGATTCTTTCAGGAAGACGAAGGAGGTGGTTGGTGTTTTTCCCTCGGTGCAACAGTCTTCTGTGTCATCGATTATTTCGGTTGTGAAGGTTGAGCTTCTTGAATGGTATTTGACGATGGTCAAATGTCGTCCTGTTCTTACCAAGAGTATCACTTCTGCGCTTATTTATACGGCTGCTGATTTGTCGTCTCAGACCATTTCTCTGTCATCTTCAGAGCCATATGATTTAATTCGAACACTACGCATGGCTGGATATGGTATGTTGATTCTAGGGCCATCTCTCCATTACTGGTTCAACTTAATGTCGAAACTCTTCCCCAGCAAAGATCTCTTCTCCACCTTCAAGAAAATGGCCCTGGGCCAAAGTCTCTTTGGCCCTTCCATGACAGTCGTTTTCTTCTCCATGAATGCATTTCTCCAAGGTGAAAATGGTGATGAAATTATTGCCCGATTGAAACGGGACTTGCTTCCTACCATGCTCAATGGCGTTATGTACTGGCCAGTTTGTGATTTTATCACTTTTAGATTTGTCCCTGTTCATCTTCAAGCGTTGGTGAGCAATTCTTTTTCGTATGTGTGGACAGTTTACATGACATACATGGCGAGCCTTGAGAAAGCTGCCTCATGA MIGAFRRSSGISGLLHFRHFSQLRSSKAFEPTVIVRKQTQQPIRPYFRLPDSFRKTKEVVGVFPSVQQSSVSSIISVVKVELLEWYLTMVKCRPVLTKSITSALIYTAADLSSQTISLSSSEPYDLIRTLRMAGYGMLILGPSLHYWFNLMSKLFPSKDLFSTFKKMALGQSLFGPSMTVVFFSMNAFLQGENGDEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSFSYVWTVYMTYMASLEKAAS
BLAST of Cla006412 vs. Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 7.9e-23 Identity = 55/169 (32.54%), Postives = 87/169 (51.48%), Query Frame = 1
BLAST of Cla006412 vs. Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 8.1e-20 Identity = 51/172 (29.65%), Postives = 92/172 (53.49%), Query Frame = 1
BLAST of Cla006412 vs. Swiss-Prot
Match: PXMP2_MOUSE (Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=1 SV=2) HSP 1 Score: 90.1 bits (222), Expect = 3.8e-17 Identity = 52/195 (26.67%), Postives = 92/195 (47.18%), Query Frame = 1
BLAST of Cla006412 vs. Swiss-Prot
Match: SYM1_NEUCR (Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sym-1 PE=3 SV=2) HSP 1 Score: 87.4 bits (215), Expect = 2.4e-16 Identity = 46/172 (26.74%), Postives = 84/172 (48.84%), Query Frame = 1
BLAST of Cla006412 vs. Swiss-Prot
Match: SYM1_ASPOR (Protein sym1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sym1 PE=3 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 4.2e-16 Identity = 51/176 (28.98%), Postives = 85/176 (48.30%), Query Frame = 1
BLAST of Cla006412 vs. TrEMBL
Match: A0A0A0KT72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000970 PE=3 SV=1) HSP 1 Score: 439.9 bits (1130), Expect = 2.2e-120 Identity = 224/259 (86.49%), Postives = 234/259 (90.35%), Query Frame = 1
BLAST of Cla006412 vs. TrEMBL
Match: A0A061E256_THECC (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein isoform 1 OS=Theobroma cacao GN=TCM_007199 PE=3 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 3.3e-84 Identity = 170/260 (65.38%), Postives = 196/260 (75.38%), Query Frame = 1
BLAST of Cla006412 vs. TrEMBL
Match: A0A0D2VAS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G049500 PE=3 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 2.1e-83 Identity = 170/264 (64.39%), Postives = 197/264 (74.62%), Query Frame = 1
BLAST of Cla006412 vs. TrEMBL
Match: A0A072VQF9_MEDTR (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein OS=Medicago truncatula GN=MTR_1g106775 PE=3 SV=1) HSP 1 Score: 315.5 bits (807), Expect = 6.1e-83 Identity = 154/217 (70.97%), Postives = 182/217 (83.87%), Query Frame = 1
BLAST of Cla006412 vs. TrEMBL
Match: W9RXU9_9ROSA (PXMP2/4 family protein 4 OS=Morus notabilis GN=L484_011519 PE=3 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 1.8e-82 Identity = 151/227 (66.52%), Postives = 179/227 (78.85%), Query Frame = 1
BLAST of Cla006412 vs. NCBI nr
Match: gi|700197620|gb|KGN52778.1| (hypothetical protein Csa_4G000970 [Cucumis sativus]) HSP 1 Score: 439.9 bits (1130), Expect = 3.1e-120 Identity = 224/259 (86.49%), Postives = 234/259 (90.35%), Query Frame = 1
BLAST of Cla006412 vs. NCBI nr
Match: gi|778689211|ref|XP_004152269.2| (PREDICTED: PXMP2/4 family protein 4 [Cucumis sativus]) HSP 1 Score: 439.9 bits (1130), Expect = 3.1e-120 Identity = 224/259 (86.49%), Postives = 234/259 (90.35%), Query Frame = 1
BLAST of Cla006412 vs. NCBI nr
Match: gi|659108774|ref|XP_008454382.1| (PREDICTED: PXMP2/4 family protein 4 [Cucumis melo]) HSP 1 Score: 439.5 bits (1129), Expect = 4.1e-120 Identity = 224/259 (86.49%), Postives = 233/259 (89.96%), Query Frame = 1
BLAST of Cla006412 vs. NCBI nr
Match: gi|694442070|ref|XP_009347743.1| (PREDICTED: protein SYM1-like [Pyrus x bretschneideri]) HSP 1 Score: 319.7 bits (818), Expect = 4.7e-84 Identity = 163/264 (61.74%), Postives = 202/264 (76.52%), Query Frame = 1
BLAST of Cla006412 vs. NCBI nr
Match: gi|590687213|ref|XP_007042600.1| (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein isoform 1 [Theobroma cacao]) HSP 1 Score: 319.7 bits (818), Expect = 4.7e-84 Identity = 170/260 (65.38%), Postives = 196/260 (75.38%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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