Cla006412 (gene) Watermelon (97103) v1

NameCla006412
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionIntegral membrane protein mpv17 pmp22 family (AHRD V1 **-* F0XCH7_GROCL); contains Interpro domain(s) IPR007248 Mpv17/PMP22
LocationChr10 : 15201372 .. 15202752 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGCGCCTTCCGGAGAAGCTCTGGGATATCTGGGTTGTTGCATTTTCGCCATTTTTCTCAGTTGAGAAGTTCTAAGGCTTTCGAACCTACTGTGATCGTGAGGAAGCAAACTCAACAACCCATTCGGCCCTACTTTCGTCTGCCGGATTCTTTCAGGAAGACGAAGGAGGTGGTTGGTGTTTTTCCCTCGGTGCAACAGTCTTCTGTGTCATCGATTATTTCGGTTGTGAAGGTTGAGCTTCTTGAATGGTATTTGACGATGGTCAAATGTCGTCCTGTTCTTACCAAGAGTATCACTTCTGCGCTTATTTATACGGCTGCTGATTTGTCGTCTCAGGTGAATAATTTTGGAGTTGAAACTGCTTGTTTTGAGTCTGATTATTTAAAATCTCTGTTTCCTGGGCTCCTTTTTTGTGATGTCTTTTTAGCTTGTTTGGGAAGGAACTTTTCTTGGAAGAGTTGTTTTCTCTTTAATTTGATTGTTCTTAATGGCGAACTCTTTTTTTGTTCGAATACTGCTCTCAATTGGGAATCAAAATCCTTGTGTATGAATGCTGCTCTGTTTTTGTGTTTTCTTTGTTGGGGGTTTGTTGATAATGGGGGTCCTCATTTGGGCAGTTTTAAAGCAAAATGTTCTTTGGAGAGTCTTATTTTCCTCATCATTGCAACTTTTGTTCTTATTTACTACTATCAAACCTCTGCTCTCATTAGATGTTGTCCTTTTAAACGGTTCTCTGATTTGGGAATCAAATTTTCTTTCAGACCATTTCTCTGTCATCTTCAGAGCCATATGATTTAATTCGAACACTACGCATGGCTGGATATGGTATGTTGATTCTAGGGCCATCTCTCCATTACTGGTTCAACTTAATGTCGAAACTCTTCCCCAGCAAAGATCTCTTCTCCACCTTCAAGAAAATGGCCCTGGGCCAAAGTCTCTTTGGCCCTTCCATGACAGTCGTTTTCTTCTCCATGAATGCATTTCTCCAAGGTACAAGCTGTTTTTCACAACCTGCTTCACAGGTCTAAAACATAAGATGACTGAGAATGGTTTGGTTTCATTGAACATAGGTGAAAATGGTGATGAAATTATTGCCCGATTGAAACGGGACTTGCTTCCTACCATGCTCAATGGCGTTATGTACTGGCCAGTTTGTGATTTTATCACTTTTAGATTTGTCCCTGTTCATCTTCAAGTATGTTCTGTTCTCTCTTGATTCTTTTCTCTTCTCTTCTCTTCTTCTGTTGGCTTTGGTTTTGAGTGATGTTTTGGTGTTTGTTTGGTTGTTGTGCAGGCGTTGGTGAGCAATTCTTTTTCGTATGTGTGGACAGTTTACATGACATACATGGCGAGCCTTGAGAAAGCTGCCTCATGA

mRNA sequence

ATGATCGGCGCCTTCCGGAGAAGCTCTGGGATATCTGGGTTGTTGCATTTTCGCCATTTTTCTCAGTTGAGAAGTTCTAAGGCTTTCGAACCTACTGTGATCGTGAGGAAGCAAACTCAACAACCCATTCGGCCCTACTTTCGTCTGCCGGATTCTTTCAGGAAGACGAAGGAGGTGGTTGGTGTTTTTCCCTCGGTGCAACAGTCTTCTGTGTCATCGATTATTTCGGTTGTGAAGGTTGAGCTTCTTGAATGGTATTTGACGATGGTCAAATGTCGTCCTGTTCTTACCAAGAGTATCACTTCTGCGCTTATTTATACGGCTGCTGATTTGTCGTCTCAGACCATTTCTCTGTCATCTTCAGAGCCATATGATTTAATTCGAACACTACGCATGGCTGGATATGGTATGTTGATTCTAGGGCCATCTCTCCATTACTGGTTCAACTTAATGTCGAAACTCTTCCCCAGCAAAGATCTCTTCTCCACCTTCAAGAAAATGGCCCTGGGCCAAAGTCTCTTTGGCCCTTCCATGACAGTCGTTTTCTTCTCCATGAATGCATTTCTCCAAGGTGAAAATGGTGATGAAATTATTGCCCGATTGAAACGGGACTTGCTTCCTACCATGCTCAATGGCGTTATGTACTGGCCAGTTTGTGATTTTATCACTTTTAGATTTGTCCCTGTTCATCTTCAAGCGTTGGTGAGCAATTCTTTTTCGTATGTGTGGACAGTTTACATGACATACATGGCGAGCCTTGAGAAAGCTGCCTCATGA

Coding sequence (CDS)

ATGATCGGCGCCTTCCGGAGAAGCTCTGGGATATCTGGGTTGTTGCATTTTCGCCATTTTTCTCAGTTGAGAAGTTCTAAGGCTTTCGAACCTACTGTGATCGTGAGGAAGCAAACTCAACAACCCATTCGGCCCTACTTTCGTCTGCCGGATTCTTTCAGGAAGACGAAGGAGGTGGTTGGTGTTTTTCCCTCGGTGCAACAGTCTTCTGTGTCATCGATTATTTCGGTTGTGAAGGTTGAGCTTCTTGAATGGTATTTGACGATGGTCAAATGTCGTCCTGTTCTTACCAAGAGTATCACTTCTGCGCTTATTTATACGGCTGCTGATTTGTCGTCTCAGACCATTTCTCTGTCATCTTCAGAGCCATATGATTTAATTCGAACACTACGCATGGCTGGATATGGTATGTTGATTCTAGGGCCATCTCTCCATTACTGGTTCAACTTAATGTCGAAACTCTTCCCCAGCAAAGATCTCTTCTCCACCTTCAAGAAAATGGCCCTGGGCCAAAGTCTCTTTGGCCCTTCCATGACAGTCGTTTTCTTCTCCATGAATGCATTTCTCCAAGGTGAAAATGGTGATGAAATTATTGCCCGATTGAAACGGGACTTGCTTCCTACCATGCTCAATGGCGTTATGTACTGGCCAGTTTGTGATTTTATCACTTTTAGATTTGTCCCTGTTCATCTTCAAGCGTTGGTGAGCAATTCTTTTTCGTATGTGTGGACAGTTTACATGACATACATGGCGAGCCTTGAGAAAGCTGCCTCATGA

Protein sequence

MIGAFRRSSGISGLLHFRHFSQLRSSKAFEPTVIVRKQTQQPIRPYFRLPDSFRKTKEVVGVFPSVQQSSVSSIISVVKVELLEWYLTMVKCRPVLTKSITSALIYTAADLSSQTISLSSSEPYDLIRTLRMAGYGMLILGPSLHYWFNLMSKLFPSKDLFSTFKKMALGQSLFGPSMTVVFFSMNAFLQGENGDEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSFSYVWTVYMTYMASLEKAAS
BLAST of Cla006412 vs. Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.9e-23
Identity = 55/169 (32.54%), Postives = 87/169 (51.48%), Query Frame = 1

Query: 86  YLTMVKCRPVLTKSITSALIYTAADLSSQTISLS--SSEPYDLIRTLRMAGYGMLILGPS 145
           YL+ +   PV TK++TS  +Y  +D   Q I LS    + YD  R++RMA +G  + GP 
Sbjct: 15  YLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPL 74

Query: 146 LHYWFNLMSKLFPSKDLFSTFKKMALGQSLFGPSMTVVFFSMNAFLQGENGDEIIARLKR 205
            HYWF  + K FP K     F K+ + Q +  P    +FFS    L+G++ D+I+ +LK+
Sbjct: 75  FHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMGILEGKSKDDIVEKLKK 134

Query: 206 DLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSFSYVWTVYMTYMAS 253
           D L T ++  + WP  +F+ F ++    +    N  +  W  ++  M S
Sbjct: 135 DWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFLAKMNS 183

BLAST of Cla006412 vs. Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.1e-20
Identity = 51/172 (29.65%), Postives = 92/172 (53.49%), Query Frame = 1

Query: 85  WYLTMVKCRPVLTKSITSALIYTAADLSSQTISLSSSEPYDLIRTLRMAGYGMLILGPSL 144
           WY+  +K +P+ TK++TSA +   + + +Q         ++ +    + G   LI  P +
Sbjct: 16  WYMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWG---LISSPLV 75

Query: 145 HYWFNLMSKLFPS-KDLFSTFKKMALGQSLFGPSMTVVFFSMNAFLQGENGDEIIARLKR 204
           HYW  ++ +LF + KD + ++ K+ + Q +F P + + F+S+ A L G+    I+ +L  
Sbjct: 76  HYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLAILDGKP-KSILFKLYF 135

Query: 205 DLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSFSYVWTVYMTYMASLEK 256
           DL PT+      WP+   I FRFVP HL+ L  N   + W +Y++ +A+ ++
Sbjct: 136 DLFPTLKASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILATKKR 183

BLAST of Cla006412 vs. Swiss-Prot
Match: PXMP2_MOUSE (Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=1 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 3.8e-17
Identity = 52/195 (26.67%), Postives = 92/195 (47.18%), Query Frame = 1

Query: 64  PSVQQSSVSSIISVVKVELLEWYLTMVKCRPVLTKSITSALIYTAADLSSQTISLSSSEP 123
           P+  +  V S +  +    L  YL ++K  PVLTK+++S ++    +L +QTI     + 
Sbjct: 3   PAASRLRVESELGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKD 62

Query: 124 YDLIRT---LRMAGYGMLILGPSLHYWFNLMSKLFPSKDLFSTFKKMALGQSLFGPSMTV 183
             L+     LR   YG+ + GP  HY +  M    P +  +++ K++ L +  F P+  +
Sbjct: 63  SRLLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKRLLLDRLFFAPTFLL 122

Query: 184 VFFSMNAFLQGENGDEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSFS 243
           +FF +   L+G+N    +A+++    P +      W    FI   +VP+  + L +N  +
Sbjct: 123 LFFFVMNLLEGKNVSVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAA 182

Query: 244 YVWTVYMTYMASLEK 256
             W     Y+ASL K
Sbjct: 183 LFW---YAYLASLGK 194

BLAST of Cla006412 vs. Swiss-Prot
Match: SYM1_NEUCR (Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sym-1 PE=3 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-16
Identity = 46/172 (26.74%), Postives = 84/172 (48.84%), Query Frame = 1

Query: 82  LLEWYLTMVKCRPVLTKSITSALIYTAADLSS-QTISLSSSEPYDLIRTLRMAGYGMLIL 141
           +L WY   +  RP+LT+++T+++++   D+++ Q +       +DL RT RM  YG  + 
Sbjct: 1   MLSWYKAQLAARPLLTQAVTTSILFGVGDVAAQQLVDRRGLSNHDLTRTGRMVLYGGAVF 60

Query: 142 GPSLHYWFNLMSK--LFPSKDLFSTFKKMALGQSLFGPSMTVVFFSMNAFLQGENGDEII 201
           GP+   WF  + K  + P     +   ++A  Q LF P+   +F    A L+G +  E  
Sbjct: 61  GPAATTWFRFLQKRVVVPGSTNKTILARVAADQGLFAPTFIGIFLGSMAVLEGTDVKE-- 120

Query: 202 ARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSFSYVWTVYMTYM 251
            +L+++    +    M WP    + F+ VP+  + L  N  S  W  Y++++
Sbjct: 121 -KLQKNYWEALSTNWMVWPFVQMVNFKVVPLDHRVLFVNVISIGWNCYLSWL 169

BLAST of Cla006412 vs. Swiss-Prot
Match: SYM1_ASPOR (Protein sym1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sym1 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.2e-16
Identity = 51/176 (28.98%), Postives = 85/176 (48.30%), Query Frame = 1

Query: 82  LLEWYLTMVKCRPVLTKSITSALIYTAAD-LSSQTISLSSSEPYDLIRTLRMAGYGMLIL 141
           +  WY   +  +P+LT S+TSA+++ + D L+ Q +     E +D  RT RMA YG  I 
Sbjct: 1   MFRWYQAKLAKQPILTASVTSAVLFGSGDVLAQQVVDRKGLEKHDFARTGRMALYGGAIF 60

Query: 142 GPSLHYWFNLMSKLFPSKDLFSTF-KKMALGQSLFGPSMTVVFFSMNAFLQGENGDEIIA 201
           GP+   WF  + +    K+  +T   ++A  Q LF P+    F +  A ++   G + I 
Sbjct: 61  GPAATTWFGFLQRNVVLKNSKATIVARVAADQCLFTPTHLTCFLTSMAIME---GSDPIE 120

Query: 202 RLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSFSYVWTVYMTYMASLEK 256
           + +   LP+    +  WP+   + F  VP+  + LV N  S  W   ++ + S +K
Sbjct: 121 KWRNSFLPSYKANLTIWPLVQGVNFSIVPLEYRVLVVNLVSLGWNCLLSMINSGDK 173

BLAST of Cla006412 vs. TrEMBL
Match: A0A0A0KT72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000970 PE=3 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 2.2e-120
Identity = 224/259 (86.49%), Postives = 234/259 (90.35%), Query Frame = 1

Query: 1   MIGAFRRSSGISGLLHFRHFSQLRSSKA-FEPTVIVRKQTQQPIRPYFRLPDSFRKTKEV 60
           MIGA RRSSGISGLLHFRHFS L+ SKA FE T IVRKQ Q PIRPYFRLPDSFRK KEV
Sbjct: 1   MIGALRRSSGISGLLHFRHFSHLKGSKAAFEATAIVRKQNQ-PIRPYFRLPDSFRKAKEV 60

Query: 61  VGVFPSVQQSSVSSIISVVKVELLEWYLTMVKCRPVLTKSITSALIYTAADLSSQTISLS 120
            GVF S Q SS SS  S+VKVE LEWYL M+KCRPVLTKSITSA+IYTAADLSSQTISLS
Sbjct: 61  -GVFSSGQHSSASSFFSIVKVEFLEWYLAMIKCRPVLTKSITSAIIYTAADLSSQTISLS 120

Query: 121 SSEPYDLIRTLRMAGYGMLILGPSLHYWFNLMSKLFPSKDLFSTFKKMALGQSLFGPSMT 180
           SSE YDLIRT+RMAGYGML+LGPSLHYWFNLMSKLFP KDLFSTFKKMA+GQ LFGP MT
Sbjct: 121 SSESYDLIRTVRMAGYGMLVLGPSLHYWFNLMSKLFPQKDLFSTFKKMAMGQGLFGPFMT 180

Query: 181 VVFFSMNAFLQGENGDEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSF 240
            +FFS+NAFLQGE+G EIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSF
Sbjct: 181 AIFFSLNAFLQGESGAEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSF 240

Query: 241 SYVWTVYMTYMASLEKAAS 259
           SYVWTVYMTYMASLEKA S
Sbjct: 241 SYVWTVYMTYMASLEKAVS 257

BLAST of Cla006412 vs. TrEMBL
Match: A0A061E256_THECC (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein isoform 1 OS=Theobroma cacao GN=TCM_007199 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 3.3e-84
Identity = 170/260 (65.38%), Postives = 196/260 (75.38%), Query Frame = 1

Query: 1   MIGAFRRSSGISGLLHFRHFSQLRSS-KAFEPTVIVRKQTQQPIRPYFRLPDSFRKTKEV 60
           M GA R++S I  LL  + F+          P   +R QT    R YFR P+  RK KE 
Sbjct: 1   MSGALRKNSSIIRLLPKQPFTDFTDPINRIHP--FLRNQTHTQTREYFRFPNVLRKVKEY 60

Query: 61  VGVFPSVQQSSVSSIISV-VKVELLEWYLTMVKCRPVLTKSITSALIYTAADLSSQTISL 120
             + PS+  SS SS  S   +V L+ WYL MVK  PVLTKS+TS+LIY AAD SSQTIS 
Sbjct: 61  E-ISPSLFASSFSSSSSSSTRVGLVGWYLGMVKSWPVLTKSVTSSLIYIAADFSSQTISK 120

Query: 121 SSSEPYDLIRTLRMAGYGMLILGPSLHYWFNLMSKLFPSKDLFSTFKKMALGQSLFGPSM 180
            SSEPYDL+RT RMAGYGMLILGPSLH+WFNLMSKLFP +DL +TFKKMA+GQ L+GP+M
Sbjct: 121 LSSEPYDLVRTSRMAGYGMLILGPSLHFWFNLMSKLFPKRDLITTFKKMAMGQLLYGPAM 180

Query: 181 TVVFFSMNAFLQGENGDEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNS 240
           TVVFFS+NA LQGE   EI+ARL+RDL+PTMLNGVMYWP CDFITFRF+PVHLQ LVSNS
Sbjct: 181 TVVFFSLNACLQGERSGEIVARLQRDLVPTMLNGVMYWPFCDFITFRFIPVHLQPLVSNS 240

Query: 241 FSYVWTVYMTYMASLEKAAS 259
           FSY+WTVYMTYMASL K A+
Sbjct: 241 FSYLWTVYMTYMASLAKPAT 257

BLAST of Cla006412 vs. TrEMBL
Match: A0A0D2VAS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G049500 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 2.1e-83
Identity = 170/264 (64.39%), Postives = 197/264 (74.62%), Query Frame = 1

Query: 1   MIGAFRRSSGISGLLHFRHFSQLRSS-KAFEPTVIVRKQTQQPIRPYFRLPDSFRKTKEV 60
           M G+ RR + I+ L   + F+ L        P +  R +TQ   R Y R P+  RK +E 
Sbjct: 1   MSGSLRRFAAITRLSQKQPFADLADPINRIHPFLKNRTKTQA--REYVRFPNVVRKVREY 60

Query: 61  VGVFPSV-----QQSSVSSIISVVKVELLEWYLTMVKCRPVLTKSITSALIYTAADLSSQ 120
             + PS+       SS SS  S  K+  + WYL MVK  PVLTKS+TS+ IY AADLSSQ
Sbjct: 61  E-ISPSLFSSSFSSSSSSSTASFGKLGFVGWYLGMVKSWPVLTKSVTSSAIYVAADLSSQ 120

Query: 121 TISLSSSEPYDLIRTLRMAGYGMLILGPSLHYWFNLMSKLFPSKDLFSTFKKMALGQSLF 180
           TIS SSSEPYDL+RT RMAGYG+LILGPSLH WFNLMSKLFP +DL ST KKMA+GQ L+
Sbjct: 121 TISKSSSEPYDLVRTSRMAGYGLLILGPSLHLWFNLMSKLFPKRDLISTLKKMAMGQLLY 180

Query: 181 GPSMTVVFFSMNAFLQGENGDEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQAL 240
           GP+MTVVFFS+NA LQGE+GDEI++RLKRDLLPTMLNG+MYWP CDFITFRFVPVHLQ L
Sbjct: 181 GPTMTVVFFSLNARLQGESGDEIVSRLKRDLLPTMLNGIMYWPFCDFITFRFVPVHLQPL 240

Query: 241 VSNSFSYVWTVYMTYMASLEKAAS 259
           VSNSFSY+WTVYMTYMASLEK  S
Sbjct: 241 VSNSFSYLWTVYMTYMASLEKPVS 261

BLAST of Cla006412 vs. TrEMBL
Match: A0A072VQF9_MEDTR (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein OS=Medicago truncatula GN=MTR_1g106775 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 6.1e-83
Identity = 154/217 (70.97%), Postives = 182/217 (83.87%), Query Frame = 1

Query: 44  RPYFRLPDSF--RKTK--EVVGVFPSVQQSSVSSIISVVKVELLEWYLTMVKCRPVLTKS 103
           +PYFRLP++F  +KT+  E+     S   SS SS  S+ KV  + WYL M+K RP+LTKS
Sbjct: 39  KPYFRLPNNFFTKKTRQCEISPSSFSSSSSSSSSTASIPKVGFVGWYLGMIKSRPILTKS 98

Query: 104 ITSALIYTAADLSSQTISLSSSEPYDLIRTLRMAGYGMLILGPSLHYWFNLMSKLFPSKD 163
           +TSALIYTAADLSSQTI   SS+ +D IRTLRMAGYGM+ILGPSLH+WFN +SKLFP +D
Sbjct: 99  VTSALIYTAADLSSQTIERQSSKSFDFIRTLRMAGYGMIILGPSLHFWFNFVSKLFPGRD 158

Query: 164 LFSTFKKMALGQSLFGPSMTVVFFSMNAFLQGENGDEIIARLKRDLLPTMLNGVMYWPVC 223
           +FST KKMA+GQ ++GP+MTV+FFS+NA LQGEN  EI+ARLKRDLLPTMLNGVMYWP+C
Sbjct: 159 IFSTLKKMAMGQGIYGPAMTVIFFSLNAGLQGENSKEIVARLKRDLLPTMLNGVMYWPMC 218

Query: 224 DFITFRFVPVHLQALVSNSFSYVWTVYMTYMASLEKA 257
           DFITFRF PVHLQ LVSNSFSY+WT+YMTYMASLEKA
Sbjct: 219 DFITFRFAPVHLQPLVSNSFSYLWTIYMTYMASLEKA 255

BLAST of Cla006412 vs. TrEMBL
Match: W9RXU9_9ROSA (PXMP2/4 family protein 4 OS=Morus notabilis GN=L484_011519 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.8e-82
Identity = 151/227 (66.52%), Postives = 179/227 (78.85%), Query Frame = 1

Query: 39  TQQPIRPYFRLPDSFRKTKE-------VVGVFPSVQQSSVSSIISVVKVELLEWYLTMVK 98
           +Q P R Y R P   RK ++       +   F S   SS ++     +V ++ WYL MVK
Sbjct: 39  SQTPSRAYLRFPHFMRKARDCDFSPSLLSSAFSSSSSSSTAAAAKAKEVGIIGWYLGMVK 98

Query: 99  CRPVLTKSITSALIYTAADLSSQTISLSSSEPYDLIRTLRMAGYGMLILGPSLHYWFNLM 158
           CRP+LTKS+TSALIYTAADLSSQ I   SSE YD +RTLRMAGYG+L+LGPSLHYWFN M
Sbjct: 99  CRPILTKSVTSALIYTAADLSSQIIPQQSSESYDFVRTLRMAGYGLLVLGPSLHYWFNFM 158

Query: 159 SKLFPSKDLFSTFKKMALGQSLFGPSMTVVFFSMNAFLQGENGDEIIARLKRDLLPTMLN 218
           S+LFP +DL ST KKMA+GQ ++GP+MTV+FFS+NA LQGE G EI+ARL+RDLLPTMLN
Sbjct: 159 SRLFPRRDLLSTLKKMAMGQGIYGPAMTVIFFSINARLQGETGAEIVARLQRDLLPTMLN 218

Query: 219 GVMYWPVCDFITFRFVPVHLQALVSNSFSYVWTVYMTYMASLEKAAS 259
           GVMYWPVCDFITFRF+PVHLQ LVSNSFSY+WTVYMTYMA LEKA++
Sbjct: 219 GVMYWPVCDFITFRFIPVHLQPLVSNSFSYLWTVYMTYMAGLEKAST 265

BLAST of Cla006412 vs. NCBI nr
Match: gi|700197620|gb|KGN52778.1| (hypothetical protein Csa_4G000970 [Cucumis sativus])

HSP 1 Score: 439.9 bits (1130), Expect = 3.1e-120
Identity = 224/259 (86.49%), Postives = 234/259 (90.35%), Query Frame = 1

Query: 1   MIGAFRRSSGISGLLHFRHFSQLRSSKA-FEPTVIVRKQTQQPIRPYFRLPDSFRKTKEV 60
           MIGA RRSSGISGLLHFRHFS L+ SKA FE T IVRKQ Q PIRPYFRLPDSFRK KEV
Sbjct: 1   MIGALRRSSGISGLLHFRHFSHLKGSKAAFEATAIVRKQNQ-PIRPYFRLPDSFRKAKEV 60

Query: 61  VGVFPSVQQSSVSSIISVVKVELLEWYLTMVKCRPVLTKSITSALIYTAADLSSQTISLS 120
            GVF S Q SS SS  S+VKVE LEWYL M+KCRPVLTKSITSA+IYTAADLSSQTISLS
Sbjct: 61  -GVFSSGQHSSASSFFSIVKVEFLEWYLAMIKCRPVLTKSITSAIIYTAADLSSQTISLS 120

Query: 121 SSEPYDLIRTLRMAGYGMLILGPSLHYWFNLMSKLFPSKDLFSTFKKMALGQSLFGPSMT 180
           SSE YDLIRT+RMAGYGML+LGPSLHYWFNLMSKLFP KDLFSTFKKMA+GQ LFGP MT
Sbjct: 121 SSESYDLIRTVRMAGYGMLVLGPSLHYWFNLMSKLFPQKDLFSTFKKMAMGQGLFGPFMT 180

Query: 181 VVFFSMNAFLQGENGDEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSF 240
            +FFS+NAFLQGE+G EIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSF
Sbjct: 181 AIFFSLNAFLQGESGAEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSF 240

Query: 241 SYVWTVYMTYMASLEKAAS 259
           SYVWTVYMTYMASLEKA S
Sbjct: 241 SYVWTVYMTYMASLEKAVS 257

BLAST of Cla006412 vs. NCBI nr
Match: gi|778689211|ref|XP_004152269.2| (PREDICTED: PXMP2/4 family protein 4 [Cucumis sativus])

HSP 1 Score: 439.9 bits (1130), Expect = 3.1e-120
Identity = 224/259 (86.49%), Postives = 234/259 (90.35%), Query Frame = 1

Query: 1   MIGAFRRSSGISGLLHFRHFSQLRSSKA-FEPTVIVRKQTQQPIRPYFRLPDSFRKTKEV 60
           MIGA RRSSGISGLLHFRHFS L+ SKA FE T IVRKQ Q PIRPYFRLPDSFRK KEV
Sbjct: 35  MIGALRRSSGISGLLHFRHFSHLKGSKAAFEATAIVRKQNQ-PIRPYFRLPDSFRKAKEV 94

Query: 61  VGVFPSVQQSSVSSIISVVKVELLEWYLTMVKCRPVLTKSITSALIYTAADLSSQTISLS 120
            GVF S Q SS SS  S+VKVE LEWYL M+KCRPVLTKSITSA+IYTAADLSSQTISLS
Sbjct: 95  -GVFSSGQHSSASSFFSIVKVEFLEWYLAMIKCRPVLTKSITSAIIYTAADLSSQTISLS 154

Query: 121 SSEPYDLIRTLRMAGYGMLILGPSLHYWFNLMSKLFPSKDLFSTFKKMALGQSLFGPSMT 180
           SSE YDLIRT+RMAGYGML+LGPSLHYWFNLMSKLFP KDLFSTFKKMA+GQ LFGP MT
Sbjct: 155 SSESYDLIRTVRMAGYGMLVLGPSLHYWFNLMSKLFPQKDLFSTFKKMAMGQGLFGPFMT 214

Query: 181 VVFFSMNAFLQGENGDEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSF 240
            +FFS+NAFLQGE+G EIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSF
Sbjct: 215 AIFFSLNAFLQGESGAEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSF 274

Query: 241 SYVWTVYMTYMASLEKAAS 259
           SYVWTVYMTYMASLEKA S
Sbjct: 275 SYVWTVYMTYMASLEKAVS 291

BLAST of Cla006412 vs. NCBI nr
Match: gi|659108774|ref|XP_008454382.1| (PREDICTED: PXMP2/4 family protein 4 [Cucumis melo])

HSP 1 Score: 439.5 bits (1129), Expect = 4.1e-120
Identity = 224/259 (86.49%), Postives = 233/259 (89.96%), Query Frame = 1

Query: 1   MIGAFRRSSGISGLLHFRHFSQLRSSKA-FEPTVIVRKQTQQPIRPYFRLPDSFRKTKEV 60
           MIGA RRSSGISGLLHFRHFS L+ SKA FE T IVRK  Q PIRPYFRLPDSFRK KEV
Sbjct: 35  MIGALRRSSGISGLLHFRHFSHLKGSKAAFEATAIVRKPNQ-PIRPYFRLPDSFRKAKEV 94

Query: 61  VGVFPSVQQSSVSSIISVVKVELLEWYLTMVKCRPVLTKSITSALIYTAADLSSQTISLS 120
            GVFPSVQ SS SS  S VKVE LEWYL MVKCRPVLTKSITSA+IY+AADLSSQTISLS
Sbjct: 95  -GVFPSVQHSSASSFFSFVKVEFLEWYLAMVKCRPVLTKSITSAIIYSAADLSSQTISLS 154

Query: 121 SSEPYDLIRTLRMAGYGMLILGPSLHYWFNLMSKLFPSKDLFSTFKKMALGQSLFGPSMT 180
            SE YDLIRT+RMAGYGML+LGPSLHYWFNLMSKLFP KDLFSTFKKMA+GQ LFGP MT
Sbjct: 155 PSESYDLIRTVRMAGYGMLVLGPSLHYWFNLMSKLFPKKDLFSTFKKMAMGQGLFGPFMT 214

Query: 181 VVFFSMNAFLQGENGDEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSF 240
            +FFS+NAF+QGENG EIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSF
Sbjct: 215 AIFFSLNAFVQGENGAEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSF 274

Query: 241 SYVWTVYMTYMASLEKAAS 259
           SYVWTVYMTYMASLEKA S
Sbjct: 275 SYVWTVYMTYMASLEKAVS 291

BLAST of Cla006412 vs. NCBI nr
Match: gi|694442070|ref|XP_009347743.1| (PREDICTED: protein SYM1-like [Pyrus x bretschneideri])

HSP 1 Score: 319.7 bits (818), Expect = 4.7e-84
Identity = 163/264 (61.74%), Postives = 202/264 (76.52%), Query Frame = 1

Query: 1   MIGAFRRSSGISGLLHFRHFSQLRSSKAFEPTVIVRKQTQQPIRPYFRLPDSFRKTKEV- 60
           M  AFRRS+ ++ LLH    +   ++    PT++ + QTQ P + Y R P  FRK ++  
Sbjct: 1   MTAAFRRSTILTRLLHKNSITDPIAA----PTLL-QTQTQTPSKAYLRFPQVFRKARDYD 60

Query: 61  --VGVFPSVQQSSVSSII--SVVKVELLEWYLTMVKCRPVLTKSITSALIYTAADLSSQT 120
               VF S   SS SS+   S  K   + WYL M++CRP+LTKS+T+ALIYTAADLSSQT
Sbjct: 61  LSPSVFSSAFSSSKSSVEAPSASKFGFVGWYLGMIQCRPILTKSVTAALIYTAADLSSQT 120

Query: 121 ISLSS-SEPYDLIRTLRMAGYGMLILGPSLHYWFNLMSKLFPSKDLFSTFKKMALGQSLF 180
           ++ SS SE YDL+RT RMAGYGML+LGPSLH+WFN MSK  P +D+FST KKMA+GQ L+
Sbjct: 121 LAKSSFSESYDLVRTARMAGYGMLVLGPSLHFWFNFMSKALPKRDVFSTLKKMAMGQLLY 180

Query: 181 GPSMTVVFFSMNAFLQGENGDEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQAL 240
           GP+MT VFFS+NA LQGENG+EI+ARL+RDL PT+LNGVMYWPVCDFITFRF+PVHLQ L
Sbjct: 181 GPTMTCVFFSLNACLQGENGEEIVARLRRDLFPTLLNGVMYWPVCDFITFRFIPVHLQPL 240

Query: 241 VSNSFSYVWTVYMTYMASLEKAAS 259
           VSN FSY+WT+YMTYMA LEKA++
Sbjct: 241 VSNGFSYLWTIYMTYMAGLEKAST 259

BLAST of Cla006412 vs. NCBI nr
Match: gi|590687213|ref|XP_007042600.1| (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 319.7 bits (818), Expect = 4.7e-84
Identity = 170/260 (65.38%), Postives = 196/260 (75.38%), Query Frame = 1

Query: 1   MIGAFRRSSGISGLLHFRHFSQLRSS-KAFEPTVIVRKQTQQPIRPYFRLPDSFRKTKEV 60
           M GA R++S I  LL  + F+          P   +R QT    R YFR P+  RK KE 
Sbjct: 1   MSGALRKNSSIIRLLPKQPFTDFTDPINRIHP--FLRNQTHTQTREYFRFPNVLRKVKEY 60

Query: 61  VGVFPSVQQSSVSSIISV-VKVELLEWYLTMVKCRPVLTKSITSALIYTAADLSSQTISL 120
             + PS+  SS SS  S   +V L+ WYL MVK  PVLTKS+TS+LIY AAD SSQTIS 
Sbjct: 61  E-ISPSLFASSFSSSSSSSTRVGLVGWYLGMVKSWPVLTKSVTSSLIYIAADFSSQTISK 120

Query: 121 SSSEPYDLIRTLRMAGYGMLILGPSLHYWFNLMSKLFPSKDLFSTFKKMALGQSLFGPSM 180
            SSEPYDL+RT RMAGYGMLILGPSLH+WFNLMSKLFP +DL +TFKKMA+GQ L+GP+M
Sbjct: 121 LSSEPYDLVRTSRMAGYGMLILGPSLHFWFNLMSKLFPKRDLITTFKKMAMGQLLYGPAM 180

Query: 181 TVVFFSMNAFLQGENGDEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNS 240
           TVVFFS+NA LQGE   EI+ARL+RDL+PTMLNGVMYWP CDFITFRF+PVHLQ LVSNS
Sbjct: 181 TVVFFSLNACLQGERSGEIVARLQRDLVPTMLNGVMYWPFCDFITFRFIPVHLQPLVSNS 240

Query: 241 FSYVWTVYMTYMASLEKAAS 259
           FSY+WTVYMTYMASL K A+
Sbjct: 241 FSYLWTVYMTYMASLAKPAT 257

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PX24D_DICDI7.9e-2332.54PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1[more]
PX24C_DICDI8.1e-2029.65PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1[more]
PXMP2_MOUSE3.8e-1726.67Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=1 SV=2[more]
SYM1_NEUCR2.4e-1626.74Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 ... [more]
SYM1_ASPOR4.2e-1628.98Protein sym1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sym1 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
A0A0A0KT72_CUCSA2.2e-12086.49Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000970 PE=3 SV=1[more]
A0A061E256_THECC3.3e-8465.38Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein isoform 1 OS=Theobroma ... [more]
A0A0D2VAS1_GOSRA2.1e-8364.39Uncharacterized protein OS=Gossypium raimondii GN=B456_013G049500 PE=3 SV=1[more]
A0A072VQF9_MEDTR6.1e-8370.97Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein OS=Medicago truncatula ... [more]
W9RXU9_9ROSA1.8e-8266.52PXMP2/4 family protein 4 OS=Morus notabilis GN=L484_011519 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
gi|700197620|gb|KGN52778.1|3.1e-12086.49hypothetical protein Csa_4G000970 [Cucumis sativus][more]
gi|778689211|ref|XP_004152269.2|3.1e-12086.49PREDICTED: PXMP2/4 family protein 4 [Cucumis sativus][more]
gi|659108774|ref|XP_008454382.1|4.1e-12086.49PREDICTED: PXMP2/4 family protein 4 [Cucumis melo][more]
gi|694442070|ref|XP_009347743.1|4.7e-8461.74PREDICTED: protein SYM1-like [Pyrus x bretschneideri][more]
gi|590687213|ref|XP_007042600.1|4.7e-8465.38Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein isoform 1 [Theobroma ca... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009694 jasmonic acid metabolic process
biological_process GO:0009753 response to jasmonic acid
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU36508watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU42807watermelon EST collection version 2.0transcribed_cluster
WMU59644watermelon EST collection version 2.0transcribed_cluster
WMU73065watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006412Cla006412.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU42807WMU42807transcribed_cluster
WMU59644WMU59644transcribed_cluster
WMU73065WMU73065transcribed_cluster
WMU36508WMU36508transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007248Mpv17/PMP22PANTHERPTHR11266PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17coord: 22..257
score: 9.3E
IPR007248Mpv17/PMP22PFAMPF04117Mpv17_PMP22coord: 187..247
score: 2.0
NoneNo IPR availablePANTHERPTHR11266:SF1822 KDA PEROXISOMAL MEMBRANE PROTEINcoord: 22..257
score: 9.3E

The following gene(s) are paralogous to this gene:

None