Cla006302 (gene) Watermelon (97103) v1

Overview
NameCla006302
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 23140772 .. 23141383 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTAGGTAGTGAAGGCGTTGGAGTTTTAAACTCTCCACTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCACAGAGAGAGTCATGCCTCCTCTTGGTCCGCTAAGAATTTCGGAACCAACTCAATACGTCTGTAAAAAAACAAATGTTGGGAATCCCGAGGCTTCTCTATACTGCGGCGATGTAGTAGTTTCGAATTTTTATCGACAAGCGGCGCTATCTTTGTGGGAAAGCATTCGGGATAAAATTGTGCGTACTCCATTTGAGCGAGTTCCGGATCTCAGGTCAGAAGTCACAAAGGTATTCTATGGTATTTCGAAGGTTCATGCAGAGAATTTGACTCCGCTTCAGGAGTTTGTGGAGAATTATCTCAAAAGTGTGAAAAATTTCAATTTGCTACAGTCCTCTTATTCTGCGCAATTATCTTCAACCGACAAAGATCATCAATTGGGGGAGAAAATATCTCGTATGAAAGAAACCCTTACTTTGATCGACCAAATGCGAGGAGAAGATCAAACTATTCGAAAGCGGGTTGCGCAGTTAGCCTCAGAAAAGGAGGAATTAGAAGCTAGACTTAAGAGGTTAAAGCCGAATACGGGAAACTTTTGA

mRNA sequence

ATGAAAGTAGGTAGTGAAGGCGTTGGAGTTTTAAACTCTCCACTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCACAGAGAGAGTCATGCCTCCTCTTGGTCCGCTAAGAATTTCGGAACCAACTCAATACGTCTGTAAAAAAACAAATGTTGGGAATCCCGAGGCTTCTCTATACTGCGGCGATGTAGTAGTTTCGAATTTTTATCGACAAGCGGCGCTATCTTTGTGGGAAAGCATTCGGGATAAAATTGTGCGTACTCCATTTGAGCGAGTTCCGGATCTCAGGTCAGAAGTCACAAAGGTATTCTATGGTATTTCGAAGGTTCATGCAGAGAATTTGACTCCGCTTCAGGAGTTTGTGGAGAATTATCTCAAAAGTGTGAAAAATTTCAATTTGCTACAGTCCTCTTATTCTGCGCAATTATCTTCAACCGACAAAGATCATCAATTGGGGGAGAAAATATCTCGTATGAAAGAAACCCTTACTTTGATCGACCAAATGCGAGGAGAAGATCAAACTATTCGAAAGCGGGTTGCGCAGTTAGCCTCAGAAAAGGAGGAATTAGAAGCTAGACTTAAGAGGTTAAAGCCGAATACGGGAAACTTTTGA

Coding sequence (CDS)

ATGAAAGTAGGTAGTGAAGGCGTTGGAGTTTTAAACTCTCCACTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCACAGAGAGAGTCATGCCTCCTCTTGGTCCGCTAAGAATTTCGGAACCAACTCAATACGTCTGTAAAAAAACAAATGTTGGGAATCCCGAGGCTTCTCTATACTGCGGCGATGTAGTAGTTTCGAATTTTTATCGACAAGCGGCGCTATCTTTGTGGGAAAGCATTCGGGATAAAATTGTGCGTACTCCATTTGAGCGAGTTCCGGATCTCAGGTCAGAAGTCACAAAGGTATTCTATGGTATTTCGAAGGTTCATGCAGAGAATTTGACTCCGCTTCAGGAGTTTGTGGAGAATTATCTCAAAAGTGTGAAAAATTTCAATTTGCTACAGTCCTCTTATTCTGCGCAATTATCTTCAACCGACAAAGATCATCAATTGGGGGAGAAAATATCTCGTATGAAAGAAACCCTTACTTTGATCGACCAAATGCGAGGAGAAGATCAAACTATTCGAAAGCGGGTTGCGCAGTTAGCCTCAGAAAAGGAGGAATTAGAAGCTAGACTTAAGAGGTTAAAGCCGAATACGGGAAACTTTTGA

Protein sequence

MKVGSEGVGVLNSPLEEVGCSKALFTERVMPPLGPLRISEPTQYVCKKTNVGNPEASLYCGDVVVSNFYRQAALSLWESIRDKIVRTPFERVPDLRSEVTKVFYGISKVHAENLTPLQEFVENYLKSVKNFNLLQSSYSAQLSSTDKDHQLGEKISRMKETLTLIDQMRGEDQTIRKRVAQLASEKEELEARLKRLKPNTGNF
Homology
[Close]
BLAST of Cla006302 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.3e-39
Identity = 88/174 (50.57%), Postives = 120/174 (68.97%), Query Frame = 1 

Query: 20  CSKALFTERVMPPLGPLRISEPTQYVCKKTNVGNPEASLYCGDVVVSNFYRQAALSLWES 79
           C KA F  +V     PL+ SE       K  + NPE S + G+ VVSNF+++ AL +WE 
Sbjct: 456 CPKA-FLPKVSSTHAPLKFSELPLGASNKQTMRNPEPSQWVGEKVVSNFFQKTALCMWED 515

Query: 80  IRDKIVRTPFERVPDLRSEVTKVFYGISKVHAENLTPLQEFVENYLKSVKNFNLLQSSYS 139
           I+DKI++TPFE +P LR E+  V  GI K+HA+ LT L+E++ +YLK V NFN +QSSYS
Sbjct: 516 IQDKIMQTPFECIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYS 575

Query: 140 AQLSSTDKDHQLGEKISRMKETLTLIDQMRGEDQTIRKRVAQLASEKEELEARL 194
           AQL STDK  QL EK S +KE LTL+ Q+RG+ + I++R A+L+ E++ELE RL
Sbjct: 576 AQLLSTDKARQLNEKTSAIKEALTLVKQLRGDVKVIQERAAELSLERKELEKRL 628

[Close]
BLAST of Cla006302 vs. TrEMBL
Match: U5FJ03_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09350g PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.7e-09
Identity = 43/143 (30.07%), Postives = 72/143 (50.35%), Query Frame = 1 

Query: 59  YCGDVVVSNFYRQAALSLWESIRDKIVRTPFERVPDLRSEVTKVFYGISKVHAENLTPLQ 118
           YC D ++     + A+  WESIR+KIVRTP   +P+L  EV K+ + I  +  +  + ++
Sbjct: 747 YCADDIIGEIRSEFAIKCWESIRNKIVRTPIHYIPNLAGEVEKILHSIEDIKVD-CSSIR 806

Query: 119 EFVENYLKSVKNFNLLQSSYSAQLSSTDK-------DHQLGEKISRMKETLTLIDQMRGE 178
             +   ++ VK F  L+SS S  ++S  +       + QL +      E    I     E
Sbjct: 807 RMLTEVIEDVKKFIHLESSLSPMMTSEQRALDVEKLEVQLKDSERFEDEASRSISTTHTE 866

Query: 179 DQTIRKRVAQLASEKEELEARLK 195
              I +++ +L S+K ELE+ LK
Sbjct: 867 ITKIAEQLMELQSKKTELESSLK 888

[Close]
BLAST of Cla006302 vs. TrEMBL
Match: A5C829_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015746 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-08
Identity = 42/138 (30.43%), Postives = 77/138 (55.80%), Query Frame = 1 

Query: 54  PEASLYCGDV--VVSNFYRQAALSLWESIRDKIVRTPFERVPDLRSEVTKVFYGISKVHA 113
           P  S +  DV  ++ N  RQAAL + E I++ I++T  E +P LR ++ ++F  I+K+  
Sbjct: 425 PSTSTHTFDVKQIILNAQRQAALMIGEDIKEMIIKTSNECLPLLRGKIDELFNAITKIGV 484

Query: 114 ENLTPLQEFVENYLKSVKNFNLLQSSYSAQLSSTDKDHQLGEKISRMKETLTLIDQMRGE 173
           + L+PL+  +E Y+KSV + + +Q ++S ++S      Q       +K  L  +D    +
Sbjct: 485 D-LSPLKSQIEKYMKSVDHLDAVQRTHSMKISPEANHRQ------SLKVNLATLD---AK 544

Query: 174 DQTIRKRVAQLASEKEEL 190
            + ++K + QL  +KE L
Sbjct: 545 QKALKKELEQLGIQKERL 552

[Close]
BLAST of Cla006302 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 169.5 bits (428), Expect = 6.2e-39
Identity = 88/174 (50.57%), Postives = 120/174 (68.97%), Query Frame = 1 

Query: 20  CSKALFTERVMPPLGPLRISEPTQYVCKKTNVGNPEASLYCGDVVVSNFYRQAALSLWES 79
           C KA F  +V     PL+ SE       K  + NPE S + G+ VVSNF+++ AL +WE 
Sbjct: 456 CPKA-FLPKVSSTHAPLKFSELPLGASNKQTMRNPEPSQWVGEKVVSNFFQKTALCMWED 515

Query: 80  IRDKIVRTPFERVPDLRSEVTKVFYGISKVHAENLTPLQEFVENYLKSVKNFNLLQSSYS 139
           I+DKI++TPFE +P LR E+  V  GI K+HA+ LT L+E++ +YLK V NFN +QSSYS
Sbjct: 516 IQDKIMQTPFECIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYS 575

Query: 140 AQLSSTDKDHQLGEKISRMKETLTLIDQMRGEDQTIRKRVAQLASEKEELEARL 194
           AQL STDK  QL EK S +KE LTL+ Q+RG+ + I++R A+L+ E++ELE RL
Sbjct: 576 AQLLSTDKARQLNEKTSAIKEALTLVKQLRGDVKVIQERAAELSLERKELEKRL 628

[Close]
BLAST of Cla006302 vs. NCBI nr
Match: gi|743916521|ref|XP_011002234.1| (PREDICTED: uncharacterized protein LOC105109284 [Populus euphratica])

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-09
Identity = 43/143 (30.07%), Postives = 72/143 (50.35%), Query Frame = 1 

Query: 59  YCGDVVVSNFYRQAALSLWESIRDKIVRTPFERVPDLRSEVTKVFYGISKVHAENLTPLQ 118
           YC D ++     + A+  WESIR+KIVRTP   +P+L  EV K+ + I  +  +  + ++
Sbjct: 798 YCADDIIREIRSEFAIKCWESIRNKIVRTPIHYIPNLAGEVEKILHSIEDIKVD-CSSIR 857

Query: 119 EFVENYLKSVKNFNLLQSSYSAQLSSTDK-------DHQLGEKISRMKETLTLIDQMRGE 178
             V   ++  K F  L++S S  ++S  +       + QL +  +   E    I     E
Sbjct: 858 RMVTEVIEDAKKFIHLKASLSPMMTSEQRALDVEKLEVQLKDSKAFEDEASRSISTTHAE 917

Query: 179 DQTIRKRVAQLASEKEELEARLK 195
              I K++ +L S+K ELE+ LK
Sbjct: 918 ITKIAKQLMELQSKKTELESSLK 939

[Close]
BLAST of Cla006302 vs. NCBI nr
Match: gi|566212381|ref|XP_006373173.1| (hypothetical protein POPTR_0017s09350g [Populus trichocarpa])

HSP 1 Score: 70.5 bits (171), Expect = 3.9e-09
Identity = 43/143 (30.07%), Postives = 72/143 (50.35%), Query Frame = 1 

Query: 59  YCGDVVVSNFYRQAALSLWESIRDKIVRTPFERVPDLRSEVTKVFYGISKVHAENLTPLQ 118
           YC D ++     + A+  WESIR+KIVRTP   +P+L  EV K+ + I  +  +  + ++
Sbjct: 747 YCADDIIGEIRSEFAIKCWESIRNKIVRTPIHYIPNLAGEVEKILHSIEDIKVD-CSSIR 806

Query: 119 EFVENYLKSVKNFNLLQSSYSAQLSSTDK-------DHQLGEKISRMKETLTLIDQMRGE 178
             +   ++ VK F  L+SS S  ++S  +       + QL +      E    I     E
Sbjct: 807 RMLTEVIEDVKKFIHLESSLSPMMTSEQRALDVEKLEVQLKDSERFEDEASRSISTTHTE 866

Query: 179 DQTIRKRVAQLASEKEELEARLK 195
              I +++ +L S+K ELE+ LK
Sbjct: 867 ITKIAEQLMELQSKKTELESSLK 888

[Close]
BLAST of Cla006302 vs. NCBI nr
Match: gi|147863477|emb|CAN84052.1| (hypothetical protein VITISV_015746 [Vitis vinifera])

HSP 1 Score: 66.2 bits (160), Expect = 7.3e-08
Identity = 42/138 (30.43%), Postives = 77/138 (55.80%), Query Frame = 1 

Query: 54  PEASLYCGDV--VVSNFYRQAALSLWESIRDKIVRTPFERVPDLRSEVTKVFYGISKVHA 113
           P  S +  DV  ++ N  RQAAL + E I++ I++T  E +P LR ++ ++F  I+K+  
Sbjct: 425 PSTSTHTFDVKQIILNAQRQAALMIGEDIKEMIIKTSNECLPLLRGKIDELFNAITKIGV 484

Query: 114 ENLTPLQEFVENYLKSVKNFNLLQSSYSAQLSSTDKDHQLGEKISRMKETLTLIDQMRGE 173
           + L+PL+  +E Y+KSV + + +Q ++S ++S      Q       +K  L  +D    +
Sbjct: 485 D-LSPLKSQIEKYMKSVDHLDAVQRTHSMKISPEANHRQ------SLKVNLATLD---AK 544

Query: 174 DQTIRKRVAQLASEKEEL 190
            + ++K + QL  +KE L
Sbjct: 545 QKALKKELEQLGIQKERL 552

The following BLAST results are available for this feature:
BLAST of Cla006302 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB9_CUCME4.3e-3950.57Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
U5FJ03_POPTR2.7e-0930.07Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09350g PE=4 SV=1[more]
A5C829_VITVI5.1e-0830.43Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015746 PE=4 SV=1[more]
BLAST of Cla006302 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136292|gb|ADN34118.1|6.2e-3950.57hypothetical protein [Cucumis melo subsp. melo][more]
gi|743916521|ref|XP_011002234.1|2.3e-0930.07PREDICTED: uncharacterized protein LOC105109284 [Populus euphratica][more]
gi|566212381|ref|XP_006373173.1|3.9e-0930.07hypothetical protein POPTR_0017s09350g [Populus trichocarpa][more]
gi|147863477|emb|CAN84052.1|7.3e-0830.43hypothetical protein VITISV_015746 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006302Cla006302.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 172..199
scor

Synteny