Cla006127 (gene) Watermelon (97103) v1

Overview
NameCla006127
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRetroelement pol polyprotein-like (AHRD V1 *-*- Q9FZN9_ARATH)
LocationChr4 : 14225534 .. 14225923 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGTGACAATACTTACATCCTTTCTCTTGATCTCGAGATTGATAGGACTTATAGAAGAAATCTAAGGGCTCAACACAATCAAACCGAGGAGATGGCGGAGGAGAAACGAAAGGCAATTCGGGACTACTTTCAACCAACATTACCGACAAATCAACCCGACATTATGAATGTGCCCATCAATGTCAACAACTTTGAGTTGAAATCGGGGTTGATTCAAATGGCTAGAAAGCTAGCTTTTAAAGGAGGAACCAATGAAGATCCTCATAAGCACTTACGGTCTTTCTTGGAGATATGCAAAATGAATGATGTTTCTAACGATACTATTAAACTAAGACTTTGTCCTTTTGTTTGCAGGACCGAGTGTTGTGGTTATAGTATTGTGTGA

mRNA sequence

ATGCCTCGTGACAATACTTACATCCTTTCTCTTGATCTCGAGATTGATAGGACTTATAGAAGAAATCTAAGGGCTCAACACAATCAAACCGAGGAGATGGCGGAGGAGAAACGAAAGGCAATTCGGGACTACTTTCAACCAACATTACCGACAAATCAACCCGACATTATGAATGTGCCCATCAATGTCAACAACTTTGAGTTGAAATCGGGGTTGATTCAAATGGCTAGAAAGCTAGCTTTTAAAGGAGGAACCAATGAAGATCCTCATAAGCACTTACGGTCTTTCTTGGAGATATGCAAAATGAATGATGTTTCTAACGATACTATTAAACTAAGACTTTGTCCTTTTGTTTGCAGGACCGAGTGTTGTGGTTATAGTATTGTGTGA

Coding sequence (CDS)

ATGCCTCGTGACAATACTTACATCCTTTCTCTTGATCTCGAGATTGATAGGACTTATAGAAGAAATCTAAGGGCTCAACACAATCAAACCGAGGAGATGGCGGAGGAGAAACGAAAGGCAATTCGGGACTACTTTCAACCAACATTACCGACAAATCAACCCGACATTATGAATGTGCCCATCAATGTCAACAACTTTGAGTTGAAATCGGGGTTGATTCAAATGGCTAGAAAGCTAGCTTTTAAAGGAGGAACCAATGAAGATCCTCATAAGCACTTACGGTCTTTCTTGGAGATATGCAAAATGAATGATGTTTCTAACGATACTATTAAACTAAGACTTTGTCCTTTTGTTTGCAGGACCGAGTGTTGTGGTTATAGTATTGTGTGA

Protein sequence

MPRDNTYILSLDLEIDRTYRRNLRAQHNQTEEMAEEKRKAIRDYFQPTLPTNQPDIMNVPINVNNFELKSGLIQMARKLAFKGGTNEDPHKHLRSFLEICKMNDVSNDTIKLRLCPFVCRTECCGYSIV
Homology
[Close]
BLAST of Cla006127 vs. TrEMBL
Match: A0A0J8CCZ0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g107970 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-09
Identity = 47/159 (29.56%), Postives = 76/159 (47.80%), Query Frame = 1 

Query: 1   MPRDNTYILSLDLEIDRTYR-------------------RNLRAQHNQTEEMA---EEKR 60
           MPR N  ++S D EI++T R                     + ++ + ++ +A   +   
Sbjct: 1   MPRTNRALVSFDPEIEKTARALRKQKRLEQIQKLPDFDLEYIFSEESDSKPVAMGDDNNE 60

Query: 61  KAIRDYFQPTLPTNQPDIMNVPINVNNFELKSGLIQMARKLAFKGGTNEDPHKHLRSFLE 120
           K +RDY  P        I+   I+ NNFEL+  LIQ+ ++  F G  NEDP++H+ +FLE
Sbjct: 61  KPLRDYAMPNASGAPSSIVRPTISANNFELRPALIQIIQQDQFSGLDNEDPNEHITTFLE 120

Query: 121 IC---KMNDVSNDTIK--LRLCP--------FVCRTECC 125
            C   K+N V++D ++  +RLC           C   CC
Sbjct: 121 KCDTVKLNGVTDDILEIVMRLCDNQDESLMHVTCSVACC 159

[Close]
BLAST of Cla006127 vs. TrEMBL
Match: A5B3J2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040272 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-09
Identity = 46/125 (36.80%), Postives = 70/125 (56.00%), Query Frame = 1 

Query: 8   ILSLDLEIDRTYRR-NLRAQHNQTEE---MAEEKR-------KAIRDYFQPTLPTNQPDI 67
           ++ +DL+I++T R+ N + +    +E   M +E         +A++DY  P +      I
Sbjct: 179 LVPIDLDINKTLRKLNRKCKQQVIQEVPAMGDENHGDNGVPNRALKDYSIPNVGVLS--I 238

Query: 68  MNVPINVNNFELKSGLIQMAR-KLAFKGGTNEDPHKHLRSFLEIC---KMNDVSNDTIKL 118
              PI  NNFE+K  +IQM R  + F G  N+DP+ H+ +FLEIC   K N V +D I+L
Sbjct: 239 QRPPIQANNFEIKLAIIQMIRSSVQFGGLANDDPNLHIANFLEICDTFKHNGVIDDAIRL 298

[Close]
BLAST of Cla006127 vs. TrEMBL
Match: A5B589_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018584 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.5e-09
Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 1 

Query: 8   ILSLDLEIDRTYRR-----------NLRAQHNQTEEMAEEKRKAIRDYFQPTLPTNQPDI 67
           ++ +DL+I++T R+            + A  N+         +A++DYF P +  +   I
Sbjct: 111 LVLIDLDINKTLRKLNQKRKQQVIQEVPAMRNENHGDNGVPNRALKDYFVPNVGVSS--I 170

Query: 68  MNVPINVNNFELKSGLIQMAR-KLAFKGGTNEDPHKHLRSFLEI---CKMNDVSNDTIKL 118
              PI  NNFE+K  +IQM +  + F G  N+DP+ H+ +FLEI    K N V++D I+L
Sbjct: 171 RRPPIQANNFEIKLAIIQMIQSSIQFGGLANDDPNLHIANFLEIFYTFKHNGVTDDAIRL 230

[Close]
BLAST of Cla006127 vs. TrEMBL
Match: A0A061EW79_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.2e-08
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 1 

Query: 32  EMAEEKRKAIRDYFQPTLPTNQPDIMNVPINVNNFELKSGLIQMARKLAFKGGT-NEDPH 91
           +  EE+ K +RDY    L      I    I  N FE+K  +IQM + +   GG  N+DP+
Sbjct: 13  DQQEEETKPLRDYAVRQLQNLHSSIRRPLIQANIFEIKPSIIQMIQTVVQFGGLPNDDPN 72

Query: 92  KHLRSFLEIC---KMNDVSNDTIKLRLCPFVCRTECCGYS 128
            H+ +FLEIC   K N V++D I+LRL PF  R +   +S
Sbjct: 73  AHIVNFLEICDTFKANGVTDDAIRLRLFPFSLRDKAKSWS 112

[Close]
BLAST of Cla006127 vs. TrEMBL
Match: A0A061G9Z8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027661 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.5e-08
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 1 

Query: 17  RTYRRNLRAQHNQTEEMAEEKRKAIRDYFQPTLPTNQPDIMNVPINVNNFELKSGLIQMA 76
           R  ++NL+A  N      EE+ K + +Y    + +    I  + I VNNFE+K  +IQM 
Sbjct: 10  RLQKKNLQASTNLQIMTKEEEAKYLLEYVVRLVQSLHSSIRRLAIQVNNFEIKLPIIQMI 69

Query: 77  R-KLAFKGGTNEDPHKHLRSFLEIC---KMNDVSNDTIKLRLCPFVCR 121
           +  + F    N+D + ++ +FLEIC   K N V+ND I+LRL PF  R
Sbjct: 70  QTSIQFGRSPNDDLNAYIVNFLEICDTFKHNGVTNDVIRLRLFPFSLR 117

[Close]
BLAST of Cla006127 vs. NCBI nr
Match: gi|951038589|ref|XP_014517179.1| (PREDICTED: uncharacterized protein LOC106774649 [Vigna radiata var. radiata])

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 55/133 (41.35%), Postives = 71/133 (53.38%), Query Frame = 1 

Query: 9   LSLDLEIDRTYRRNLRA----------------QHNQTEEMAEEK--RKAIRDYFQPTLP 68
           L  D EI+RT R N  +                Q  +T  MAEE+  RK IRDY  P   
Sbjct: 10  LLFDSEIERTARSNRSSARRRKRERRKEQRRIEQEEETSTMAEEQNPRKTIRDYSMPDPN 69

Query: 69  TNQPDIMNVPINVNNFELKSGLIQMARKLAFKGGTNEDPHKHLRSFLEIC---KMNDVSN 121
             Q  I+  PI  NNFE+K  L+Q+ ++  F+G  +EDP+ HL +FL IC   K N VS+
Sbjct: 70  GYQGSIVRPPIQANNFEIKPALLQVIQQNQFEGAVSEDPNSHLENFLAICDTLKYNGVSD 129

[Close]
BLAST of Cla006127 vs. NCBI nr
Match: gi|672195269|ref|XP_008776509.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera])

HSP 1 Score: 85.1 bits (209), Expect = 9.7e-14
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1 

Query: 36  EKRKAIRDYFQPTLPTNQPDIMNVPINVNNFELKSGLIQMARKLAFKGGTNEDPHKHLRS 95
           + ++ + DY  P +   QP I+   +N NNFE+K GLIQM ++  F GG  EDP+ HL +
Sbjct: 8   QNKRLLSDYAVPNVNGAQPSIVRPTVNANNFEIKPGLIQMVQQEQFGGGPAEDPYAHLAN 67

Query: 96  FLEIC---KMNDVSNDTIKLRLCPF 118
           FLEIC   KMN VS+D I+LRL PF
Sbjct: 68  FLEICDTIKMNGVSDDAIRLRLFPF 92

[Close]
BLAST of Cla006127 vs. NCBI nr
Match: gi|720098256|ref|XP_010247575.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 13 [Nelumbo nucifera])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 51/113 (45.13%), Postives = 68/113 (60.18%), Query Frame = 1 

Query: 12  DLEIDRTYRRNLRAQHN---QTEEMAEEKRKAIRDYFQPTLPTNQPDIMNVPINVNNFEL 71
           D EI+RT R  LRA      + EEMAE +   + DY +PTL      I+ + I  NNFE+
Sbjct: 619 DPEIERTLRIRLRAARQVRPEIEEMAEPR--TMMDYAKPTLTGAASRIIRLAIAANNFEI 678

Query: 72  KSGLIQMARKLA-FKGGTNEDPHKHLRSFLEIC---KMNDVSNDTIKLRLCPF 118
           K  +IQM + +  F G  +EDP+ H+ +FLEIC   K N VS+D I+LRL PF
Sbjct: 679 KLAIIQMIQNIVQFCGMVHEDPNSHIANFLEICNTFKHNGVSDDVIRLRLFPF 729

[Close]
BLAST of Cla006127 vs. NCBI nr
Match: gi|848865485|ref|XP_012833448.1| (PREDICTED: uncharacterized protein LOC105954320 [Erythranthe guttata])

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-12
Identity = 52/148 (35.14%), Postives = 70/148 (47.30%), Query Frame = 1 

Query: 3   RDNTYILSLDLEIDRTYRRNLRAQHNQTEEMAEEK------------------------- 62
           R N  I+  D EI+RT RR    ++ Q+E MAE++                         
Sbjct: 354 RRNLEIIPYDPEIERTLRRLRATRNQQSEPMAEDQGNPEHLAFEYDQEPGRDHEQPRPNL 413

Query: 63  --RKAIRDYFQPTLPTNQPDIMNVPINVNNFELKSGLIQMARKLAFKGGTNEDPHKHLRS 121
              + +R+Y  P +  N   I    I  NNFELK+GLI M     F G    DP+ HL +
Sbjct: 414 PPERTMREYRTPAMNENYSGIRKPTIAANNFELKTGLINMVMANQFSGAATADPNLHLAN 473

[Close]
BLAST of Cla006127 vs. NCBI nr
Match: gi|720098288|ref|XP_010247584.1| (PREDICTED: uncharacterized protein LOC104590568 [Nelumbo nucifera])

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1 

Query: 9   LSLDLEIDRTYRRNLRAQHNQTEEMAE-EKRKAIRDYFQPTLPTNQPDIMNVPINVNNFE 68
           ++ D EI+RT  R LRA      E AE  +++ + DY +PTL      I+   I  NNF+
Sbjct: 113 ITYDPEIERTLHRCLRASKQGRAESAEMAEQRTMMDYAKPTLTGAASSIVRPAIVANNFK 172

Query: 69  LKSGLIQMARK-LAFKGGTNEDPHKHLRSFLEIC---KMNDVSNDTIKLRLCPF 118
           +K  +IQM +  + F G  +EDP+ H+ +FLEIC   K N VS+D ++LRL PF
Sbjct: 173 IKLAIIQMFQNTVQFCGLAHEDPNTHIANFLEICDTFKHNGVSDDVVRLRLFPF 226

The following BLAST results are available for this feature:
BLAST of Cla006127 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0J8CCZ0_BETVU3.8e-0929.56Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g107970 PE=4 S... [more]
A5B3J2_VITVI5.0e-0936.80Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040272 PE=4 SV=1[more]
A5B589_VITVI8.5e-0934.40Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018584 PE=4 SV=1[more]
A0A061EW79_THECC7.2e-0839.00Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1[more]
A0A061G9Z8_THECC9.5e-0837.04Uncharacterized protein OS=Theobroma cacao GN=TCM_027661 PE=4 SV=1[more]
BLAST of Cla006127 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|951038589|ref|XP_014517179.1|1.5e-1441.35PREDICTED: uncharacterized protein LOC106774649 [Vigna radiata var. radiata][more]
gi|672195269|ref|XP_008776509.1|9.7e-1449.41PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix da... [more]
gi|720098256|ref|XP_010247575.1|1.4e-1245.13PREDICTED: probable pectinesterase/pectinesterase inhibitor 13 [Nelumbo nucifera... [more]
gi|848865485|ref|XP_012833448.1|5.3e-1235.14PREDICTED: uncharacterized protein LOC105954320 [Erythranthe guttata][more]
gi|720098288|ref|XP_010247584.1|1.5e-1141.23PREDICTED: uncharacterized protein LOC104590568 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006127Cla006127.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 20..40
scor
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 68..117
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006127Cucumber (Gy14) v2cgybwmB313
Cla006127Cucumber (Chinese Long) v3cucwmB354