Cla006116 (gene) Watermelon (97103) v1

Overview
NameCla006116
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description30S ribosomal protein S5 (AHRD V1 *-** RS5_UREU1); contains Interpro domain(s) IPR005711 Ribosomal protein S5, eukaryotic/archaeal
LocationChr4 : 13707006 .. 13708503 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAAGAGGAGGAGGAGACCGCGGCGGCTTCGGCAGAGGCTTCGGTGGTAGAGGCCGTGGTGGCGATCGTGGCCGTGGACGCCGTCGTGCAGGCCGCCGTGACGAAGAGGAGAAGTGGGTTCCAGTCACCAAGCTTGGCCGTCTCGTCAAGGAAGGCAAGATTCAGTCACTCGAGCAGATTTACCTTCACTCTCTCCCAATCAAGGAGCACCAGATCGTCGATACTCTCATTGGCCCCAGCCTCAAGGATGAGGTCATGAAGATCATGCCTGTGCAGAAACAGACCCGAGCTGGGCAGAGAACTAGGTTTAAGGCCTTCGTTGTCGTCGGCGACGGTAATGGCCATGTCGGATTGGGAGTTAAGTGCAGCAAAGAGGTGGCAACTGCTATTCGTGGTTCGATTATACTGGCTAAGTTGTCGGTGATTCCTGTTAGGAGGGGTTATTGGGGTAACAAGATTGGAAAGCCCCATACTGTTCCTTGCAAGGTCACCGGAAAGTGTGGCTCTGTCACCGTCCGTATGGTCCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTAGGGTTCCCAAGAAGGTGCTTCAATTCGCTGGTATTGAGGATGTTTTCACTTCCTCCAGGGGATCCACTAAGACGCTTGGAAACTTTGTGAAGGTATATCGTAATATGATGCAATATCTATATCATCTCTTCTTTTATATGTATCATTGGAATTTAAGGTGTCTATTATCATTATAATGTGTTGTGTTATGTCATTTGGGGCATTCCGAATTTAGATTTGAACTTAGGCTCGCCTTGTGAAATCTTGTGGTAGTCTATTCTTGGTTAATTATGGATATGTTACTGATCTGGGTTCTTTTTTTGGATTCGTCTCTTTGTTTGTGCTGCCTCCGTTTTGTGGAATTGACTCGTGTTTTGTTTTCTTAGCTTGCTATATTATATGTTATGCTTGAATAGTCTGGACTGTTTAGTATGGAATAGTTATGTCTAAGTCAGACTACTGGGTTGGCTTTTGTAAGATATTAGGTTCAAGTGCAATTTGTAAATGTTAAAGAGTTTTGTAGTAATTGCGTTAGAGAATTTCAAATATTTCTTATGATTGGATCGCCTGGCAAATTGCTAGTGAAATTGTATGCAAATACATGGTGCATGAAAAGTCATCTATTAAAAGTTTTTTTTCCCTAAAATGGATTTTAGTCACTTGAATAGGTAATTTATTTATGTGCATTGGTATTTGTTAATGTTGAACATGAACTTGAACCAGAGTGTTCAATCTGTCTTATATAAGTCATTTGATTTTTTTTTCTGTTACAAATATTTCCATTTTTGGCAGGCTACCTTTGATTGTCTATTGAAAACCTATGGTTTCCTGACACCTGAGTTCTGGAGGGAGACTCGCTTCACCAAATCTCCATTCCAAGAGCACACCGATCTGTTGGCTAAACCGACCGTAAAGGCATTGTTGTTGGAGGATGCTGAGAGGGTGAATGCTTAA

mRNA sequence

ATGGCTGAAAGAGGAGGAGGAGACCGCGGCGGCTTCGGCAGAGGCTTCGGTGGTAGAGGCCGTGGTGGCGATCGTGGCCGTGGACGCCGTCGTGCAGGCCGCCGTGACGAAGAGGAGAAGTGGGTTCCAGTCACCAAGCTTGGCCGTCTCGTCAAGGAAGGCAAGATTCAGTCACTCGAGCAGATTTACCTTCACTCTCTCCCAATCAAGGAGCACCAGATCGTCGATACTCTCATTGGCCCCAGCCTCAAGGATGAGGTCATGAAGATCATGCCTGTGCAGAAACAGACCCGAGCTGGGCAGAGAACTAGGTTTAAGGCCTTCGTTGTCGTCGGCGACGGTAATGGCCATGTCGGATTGGGAGTTAAGTGCAGCAAAGAGGTGGCAACTGCTATTCGTGGTTCGATTATACTGGCTAAGTTGTCGGTGATTCCTGTTAGGAGGGGTTATTGGGGTAACAAGATTGGAAAGCCCCATACTGTTCCTTGCAAGGTCACCGGAAAGTGTGGCTCTGTCACCGTCCGTATGGTCCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTAGGGTTCCCAAGAAGGTGCTTCAATTCGCTGGTATTGAGGATGTTTTCACTTCCTCCAGGGGATCCACTAAGACGCTTGGAAACTTTGTGAAGGCTACCTTTGATTGTCTATTGAAAACCTATGGTTTCCTGACACCTGAGTTCTGGAGGGAGACTCGCTTCACCAAATCTCCATTCCAAGAGCACACCGATCTGTTGGCTAAACCGACCGTAAAGGCATTGTTGTTGGAGGATGCTGAGAGGGTGAATGCTTAA

Coding sequence (CDS)

ATGGCTGAAAGAGGAGGAGGAGACCGCGGCGGCTTCGGCAGAGGCTTCGGTGGTAGAGGCCGTGGTGGCGATCGTGGCCGTGGACGCCGTCGTGCAGGCCGCCGTGACGAAGAGGAGAAGTGGGTTCCAGTCACCAAGCTTGGCCGTCTCGTCAAGGAAGGCAAGATTCAGTCACTCGAGCAGATTTACCTTCACTCTCTCCCAATCAAGGAGCACCAGATCGTCGATACTCTCATTGGCCCCAGCCTCAAGGATGAGGTCATGAAGATCATGCCTGTGCAGAAACAGACCCGAGCTGGGCAGAGAACTAGGTTTAAGGCCTTCGTTGTCGTCGGCGACGGTAATGGCCATGTCGGATTGGGAGTTAAGTGCAGCAAAGAGGTGGCAACTGCTATTCGTGGTTCGATTATACTGGCTAAGTTGTCGGTGATTCCTGTTAGGAGGGGTTATTGGGGTAACAAGATTGGAAAGCCCCATACTGTTCCTTGCAAGGTCACCGGAAAGTGTGGCTCTGTCACCGTCCGTATGGTCCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTAGGGTTCCCAAGAAGGTGCTTCAATTCGCTGGTATTGAGGATGTTTTCACTTCCTCCAGGGGATCCACTAAGACGCTTGGAAACTTTGTGAAGGCTACCTTTGATTGTCTATTGAAAACCTATGGTTTCCTGACACCTGAGTTCTGGAGGGAGACTCGCTTCACCAAATCTCCATTCCAAGAGCACACCGATCTGTTGGCTAAACCGACCGTAAAGGCATTGTTGTTGGAGGATGCTGAGAGGGTGAATGCTTAA

Protein sequence

MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDAERVNA
Homology
[Close]
BLAST of Cla006116 vs. Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 2.0e-130
Identity = 233/266 (87.59%), Postives = 245/266 (92.11%), Query Frame = 1 

Query: 1   MAERG---GGDRGGFGRGFGGRG--RGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGK 60
           MAERG   GGDRG FGRGFGGRG  RGG RGRGRR AGR  EEEKWVPVTKLGRLVKEGK
Sbjct: 1   MAERGVERGGDRGDFGRGFGGRGGGRGGPRGRGRR-AGRAPEEEKWVPVTKLGRLVKEGK 60

Query: 61  IQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGN 120
           I  +EQIYLHSLP+KE+QI+D L+GPSLKDEVMKIMPVQKQTRAGQRTRFKAF+VVGD N
Sbjct: 61  ITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSN 120

Query: 121 GHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 180
           GHVGLGVKCSKEVATAIRG+IILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVR
Sbjct: 121 GHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 180

Query: 181 MVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPE 240
           MVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCL KTYGFLTPE
Sbjct: 181 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPE 240

Query: 241 FWRETRFTKSPFQEHTD-LLAKPTVK 261
           FW+ETRF+KSP+QEHTD LL  P VK
Sbjct: 241 FWKETRFSKSPYQEHTDFLLIPPGVK 265

[Close]
BLAST of Cla006116 vs. Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 456.4 bits (1173), Expect = 2.1e-127
Identity = 226/268 (84.33%), Postives = 239/268 (89.18%), Query Frame = 1 

Query: 1   MAERGG-------GDRGGFGRGFGGRGRGGDRG------RGRRRAGRRDEEEKWVPVTKL 60
           MAERGG       G+RG FGRGFGGRG  GDRG      RG RR GR  EEEKWVPVTKL
Sbjct: 1   MAERGGERGVERGGERGDFGRGFGGRGGRGDRGGRGRGGRGGRRGGRASEEEKWVPVTKL 60

Query: 61  GRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKA 120
           GRLV  G I+ +EQIYLHSLP+KE+QI+D LIGP+LKDEVMKIMPVQKQTRAGQRTRFKA
Sbjct: 61  GRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKA 120

Query: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTG 180
           FVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTG 180

Query: 181 KCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLK 240
           KCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCL K
Sbjct: 181 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQK 240

Query: 241 TYGFLTPEFWRETRFTKSPFQEHTDLLA 256
           TYGFLTPEFW+ETRF++SP+QEHTD LA
Sbjct: 241 TYGFLTPEFWKETRFSRSPYQEHTDFLA 268

[Close]
BLAST of Cla006116 vs. Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 453.8 bits (1166), Expect = 1.4e-126
Identity = 227/274 (82.85%), Postives = 240/274 (87.59%), Query Frame = 1 

Query: 1   MAERGG-------GDRGGFGRGFGGRGRGGDRGRGR------RRAGRRDEEEKWVPVTKL 60
           MAERGG       GDRG FGRGFGG GRGG RGR R      RR GR  EE KWVPVTKL
Sbjct: 1   MAERGGEGGAERGGDRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKL 60

Query: 61  GRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKA 120
           GRLV + KI  LEQIYLHSLP+KE+QI+D L+GP+LKDEVMKIMPVQKQTRAGQRTRFKA
Sbjct: 61  GRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKA 120

Query: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTG 180
           FVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTG 180

Query: 181 KCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLK 240
           KCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCL K
Sbjct: 181 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQK 240

Query: 241 TYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 262
           TYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 241 TYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]
BLAST of Cla006116 vs. Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.4e-126
Identity = 227/274 (82.85%), Postives = 240/274 (87.59%), Query Frame = 1 

Query: 1   MAERGG-------GDRGGFGRGFGGRGRGGDRGRGR------RRAGRRDEEEKWVPVTKL 60
           MAERGG       GDRG FGRGFGG GRGG RGR R      RR GR  EE KWVPVTKL
Sbjct: 1   MAERGGESGAERGGDRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKL 60

Query: 61  GRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKA 120
           GRLV + KI  LEQIYLHSLP+KE+QI+D L+GP+LKDEVMKIMPVQKQTRAGQRTRFKA
Sbjct: 61  GRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKA 120

Query: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTG 180
           FVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTG 180

Query: 181 KCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLK 240
           KCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCL K
Sbjct: 181 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQK 240

Query: 241 TYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 262
           TYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 241 TYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]
BLAST of Cla006116 vs. Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 387.9 bits (995), Expect = 9.2e-107
Identity = 187/253 (73.91%), Postives = 214/253 (84.58%), Query Frame = 1 

Query: 6   GGDRGGFGRGFGGRGRGGDRGRGRRRAGR--RDEEEKWVPVTKLGRLVKEGKIQSLEQIY 65
           GG RGGFG G  GRGRG  RGRGR R  R  + E+++W+PVTKLGRLVK+ KI+SLE+IY
Sbjct: 23  GGFRGGFGSGLRGRGRGRGRGRGRGRGARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIY 82

Query: 66  LHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 125
           L SLPIKE +I+D  +G SLKDEV+KIMPVQKQTRAGQRTRFKAFV +GD NGHVGLGVK
Sbjct: 83  LFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVK 142

Query: 126 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 185
           CSKEVATAIRG+IILAKLS++PVRRGYWGNKIGKPHTVPCKVTG+CGSV VR++PAPRG 
Sbjct: 143 CSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGT 202

Query: 186 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFT 245
           GIV+A VPKK+L  AGI+D +TS+RG T TLGNF KATFD + KTY +LTP+ W+ET FT
Sbjct: 203 GIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFT 262

Query: 246 KSPFQEHTDLLAK 257
           KSP+QE TD L K
Sbjct: 263 KSPYQEFTDHLVK 275

[Close]
BLAST of Cla006116 vs. TrEMBL
Match: A0A0A0KZQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166960 PE=3 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 2.3e-149
Identity = 267/269 (99.26%), Postives = 268/269 (99.63%), Query Frame = 1 

Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAERGG DRGGFGRGFGGRGRGGDRGRGRRRAGRR+EEEKWVPVTKLGRLVKEGKIQSLE
Sbjct: 1   MAERGG-DRGGFGRGFGGRGRGGDRGRGRRRAGRREEEEKWVPVTKLGRLVKEGKIQSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET 240
           RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET
Sbjct: 181 RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLEDAER 270
           RFTKSPFQEHTDLLAKPTVKALLLEDAER
Sbjct: 241 RFTKSPFQEHTDLLAKPTVKALLLEDAER 268

[Close]
BLAST of Cla006116 vs. TrEMBL
Match: A0A0A0LFC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G816100 PE=3 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 5.0e-144
Identity = 260/267 (97.38%), Postives = 263/267 (98.50%), Query Frame = 1 

Query: 8   DRGGFGRGFGGRGRGG-DRGRG-RRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH 67
           +RGGFGRGFGGRGRGG DRGRG RRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH
Sbjct: 3   ERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH 62

Query: 68  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 127
           SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS
Sbjct: 63  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 122

Query: 128 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 187
           KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI
Sbjct: 123 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 182

Query: 188 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKS 247
           VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLL+TYGFLTPEFWRETRFTKS
Sbjct: 183 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLRTYGFLTPEFWRETRFTKS 242

Query: 248 PFQEHTDLLAKPTVKALLLEDAERVNA 273
           PFQEHTDLLAKPTVKALLLED +RV A
Sbjct: 243 PFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]
BLAST of Cla006116 vs. TrEMBL
Match: E5GBY7_CUCME (40S ribosomal protein s2 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 5.0e-144
Identity = 260/267 (97.38%), Postives = 263/267 (98.50%), Query Frame = 1 

Query: 8   DRGGFGRGFGGRGRGG-DRGRG-RRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH 67
           +RGGFGRGFGGRGRGG DRGRG RRRAGRRDEEEKWVPVTKLGRLVKEG+IQSLEQIYLH
Sbjct: 3   ERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGRIQSLEQIYLH 62

Query: 68  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 127
           SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS
Sbjct: 63  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 122

Query: 128 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 187
           KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI
Sbjct: 123 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 182

Query: 188 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKS 247
           VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKS
Sbjct: 183 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKS 242

Query: 248 PFQEHTDLLAKPTVKALLLEDAERVNA 273
           PFQEHTDLLAKPTVKALLLED +RV A
Sbjct: 243 PFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]
BLAST of Cla006116 vs. TrEMBL
Match: A0A151SUX4_CAJCA (40S ribosomal protein S2-4 OS=Cajanus cajan GN=KK1_014020 PE=3 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 1.1e-143
Identity = 254/272 (93.38%), Postives = 267/272 (98.16%), Query Frame = 1 

Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAERGGGDRGGFGRGFGGRGRGGDRGRGRRR  RR+EEEKWVPVTKLGRLVKEGKI+SLE
Sbjct: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRGPRREEEEKWVPVTKLGRLVKEGKIRSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTL+GP+LKDEVMKI PVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLVGPTLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRG+IILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET 240
           RG+GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCL+KTYGFLTPEFW+ET
Sbjct: 181 RGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLEDAERVNA 273
           RF+KSPFQE+TDLLAKPT KAL+LE+ ERV+A
Sbjct: 241 RFSKSPFQEYTDLLAKPTGKALILEE-ERVDA 271

[Close]
BLAST of Cla006116 vs. TrEMBL
Match: A0A151R165_CAJCA (40S ribosomal protein S2-4 OS=Cajanus cajan GN=KK1_042601 PE=3 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 4.3e-143
Identity = 252/272 (92.65%), Postives = 266/272 (97.79%), Query Frame = 1 

Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAERGGGDRGGFGRGFGGRGRGGDRGRGRRR  RR+EEEKWVPVTKLGRLVKEGKI+SLE
Sbjct: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRGPRREEEEKWVPVTKLGRLVKEGKIRSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQI+DTL+GP+LKDEVMKI PVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIIDTLVGPTLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRG+IILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET 240
           RG+GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCL+KTYGFLTPEFW+ET
Sbjct: 181 RGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLEDAERVNA 273
           RF+KSPFQE+TDLLAKPT K L+LE+ ERV+A
Sbjct: 241 RFSKSPFQEYTDLLAKPTGKTLILEE-ERVDA 271

[Close]
BLAST of Cla006116 vs. NCBI nr
Match: gi|659121645|ref|XP_008460763.1| (PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo])

HSP 1 Score: 540.0 bits (1390), Expect = 2.3e-150
Identity = 270/272 (99.26%), Postives = 270/272 (99.26%), Query Frame = 1 

Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAERGG DRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE
Sbjct: 1   MAERGG-DRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET 240
           RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET
Sbjct: 181 RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLEDAERVNA 273
           RFTKSPFQEHTDLLAKPTVKALLLEDAERV A
Sbjct: 241 RFTKSPFQEHTDLLAKPTVKALLLEDAERVAA 271

[Close]
BLAST of Cla006116 vs. NCBI nr
Match: gi|778692263|ref|XP_004149390.2| (PREDICTED: 40S ribosomal protein S2-4-like [Cucumis sativus])

HSP 1 Score: 536.2 bits (1380), Expect = 3.4e-149
Identity = 267/269 (99.26%), Postives = 268/269 (99.63%), Query Frame = 1 

Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAERGG DRGGFGRGFGGRGRGGDRGRGRRRAGRR+EEEKWVPVTKLGRLVKEGKIQSLE
Sbjct: 1   MAERGG-DRGGFGRGFGGRGRGGDRGRGRRRAGRREEEEKWVPVTKLGRLVKEGKIQSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET 240
           RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET
Sbjct: 181 RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLEDAER 270
           RFTKSPFQEHTDLLAKPTVKALLLEDAER
Sbjct: 241 RFTKSPFQEHTDLLAKPTVKALLLEDAER 268

[Close]
BLAST of Cla006116 vs. NCBI nr
Match: gi|659085013|ref|XP_008443195.1| (PREDICTED: 40S ribosomal protein S2-3-like [Cucumis melo])

HSP 1 Score: 518.5 bits (1334), Expect = 7.2e-144
Identity = 260/267 (97.38%), Postives = 263/267 (98.50%), Query Frame = 1 

Query: 8   DRGGFGRGFGGRGRGG-DRGRG-RRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH 67
           +RGGFGRGFGGRGRGG DRGRG RRRAGRRDEEEKWVPVTKLGRLVKEG+IQSLEQIYLH
Sbjct: 3   ERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGRIQSLEQIYLH 62

Query: 68  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 127
           SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS
Sbjct: 63  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 122

Query: 128 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 187
           KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI
Sbjct: 123 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 182

Query: 188 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKS 247
           VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKS
Sbjct: 183 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKS 242

Query: 248 PFQEHTDLLAKPTVKALLLEDAERVNA 273
           PFQEHTDLLAKPTVKALLLED +RV A
Sbjct: 243 PFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]
BLAST of Cla006116 vs. NCBI nr
Match: gi|778685074|ref|XP_011652156.1| (PREDICTED: 40S ribosomal protein S2-4 [Cucumis sativus])

HSP 1 Score: 518.5 bits (1334), Expect = 7.2e-144
Identity = 260/267 (97.38%), Postives = 263/267 (98.50%), Query Frame = 1 

Query: 8   DRGGFGRGFGGRGRGG-DRGRG-RRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH 67
           +RGGFGRGFGGRGRGG DRGRG RRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH
Sbjct: 3   ERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH 62

Query: 68  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 127
           SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS
Sbjct: 63  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 122

Query: 128 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 187
           KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI
Sbjct: 123 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 182

Query: 188 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKS 247
           VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLL+TYGFLTPEFWRETRFTKS
Sbjct: 183 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLRTYGFLTPEFWRETRFTKS 242

Query: 248 PFQEHTDLLAKPTVKALLLEDAERVNA 273
           PFQEHTDLLAKPTVKALLLED +RV A
Sbjct: 243 PFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]
BLAST of Cla006116 vs. NCBI nr
Match: gi|1012347414|gb|KYP58605.1| (40S ribosomal protein S2-4 [Cajanus cajan])

HSP 1 Score: 517.3 bits (1331), Expect = 1.6e-143
Identity = 254/272 (93.38%), Postives = 267/272 (98.16%), Query Frame = 1 

Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAERGGGDRGGFGRGFGGRGRGGDRGRGRRR  RR+EEEKWVPVTKLGRLVKEGKI+SLE
Sbjct: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRGPRREEEEKWVPVTKLGRLVKEGKIRSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTL+GP+LKDEVMKI PVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLVGPTLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRG+IILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET 240
           RG+GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCL+KTYGFLTPEFW+ET
Sbjct: 181 RGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLEDAERVNA 273
           RF+KSPFQE+TDLLAKPT KAL+LE+ ERV+A
Sbjct: 241 RFSKSPFQEYTDLLAKPTGKALILEE-ERVDA 271

The following BLAST results are available for this feature:
BLAST of Cla006116 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS24_ARATH2.0e-13087.5940S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1[more]
RS23_ARATH2.1e-12784.3340S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2[more]
RS21_ARATH1.4e-12682.8540S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2[more]
RS22_ARATH1.4e-12682.8540S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1[more]
RS2_MOUSE9.2e-10773.9140S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3[more]
BLAST of Cla006116 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZQ4_CUCSA2.3e-14999.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166960 PE=3 SV=1[more]
A0A0A0LFC7_CUCSA5.0e-14497.38Uncharacterized protein OS=Cucumis sativus GN=Csa_3G816100 PE=3 SV=1[more]
E5GBY7_CUCME5.0e-14497.3840S ribosomal protein s2 OS=Cucumis melo subsp. melo PE=3 SV=1[more]
A0A151SUX4_CAJCA1.1e-14393.3840S ribosomal protein S2-4 OS=Cajanus cajan GN=KK1_014020 PE=3 SV=1[more]
A0A151R165_CAJCA4.3e-14392.6540S ribosomal protein S2-4 OS=Cajanus cajan GN=KK1_042601 PE=3 SV=1[more]
BLAST of Cla006116 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121645|ref|XP_008460763.1|2.3e-15099.26PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo][more]
gi|778692263|ref|XP_004149390.2|3.4e-14999.26PREDICTED: 40S ribosomal protein S2-4-like [Cucumis sativus][more]
gi|659085013|ref|XP_008443195.1|7.2e-14497.38PREDICTED: 40S ribosomal protein S2-3-like [Cucumis melo][more]
gi|778685074|ref|XP_011652156.1|7.2e-14497.38PREDICTED: 40S ribosomal protein S2-4 [Cucumis sativus][more]
gi|1012347414|gb|KYP58605.1|1.6e-14393.3840S ribosomal protein S2-4 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000851Ribosomal_S5
IPR005324Ribosomal_S5_C
IPR005711Ribosomal_S5_euk/arc
IPR013810Ribosomal_S5_N
IPR014720dsRBD_dom
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR018192Ribosomal_S5_N_CS
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU21401watermelon EST collection version 2.0transcribed_cluster
WMU23840watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU24868watermelon EST collection version 2.0transcribed_cluster
WMU43129watermelon EST collection version 2.0transcribed_cluster
WMU46973watermelon EST collection version 2.0transcribed_cluster
WMU62369watermelon EST collection version 2.0transcribed_cluster
WMU69281watermelon EST collection version 2.0transcribed_cluster
WMU70611watermelon EST collection version 2.0transcribed_cluster
WMU71627watermelon EST collection version 2.0transcribed_cluster
WMU71886watermelon EST collection version 2.0transcribed_cluster
WMU74917watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006116Cla006116.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU23840WMU23840transcribed_cluster
WMU21401WMU21401transcribed_cluster
WMU24868WMU24868transcribed_cluster
WMU74917WMU74917transcribed_cluster
WMU71886WMU71886transcribed_cluster
WMU70611WMU70611transcribed_cluster
WMU43129WMU43129transcribed_cluster
WMU71627WMU71627transcribed_cluster
WMU46973WMU46973transcribed_cluster
WMU69281WMU69281transcribed_cluster
WMU62369WMU62369transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000851Ribosomal protein S5PANTHERPTHR13718RIBOSOMAL S SUBUNITcoord: 3..265
score: 1.6E
IPR005324Ribosomal protein S5, C-terminalPFAMPF03719Ribosomal_S5_Ccoord: 166..233
score: 1.9
IPR005711Ribosomal protein S5, eukaryotic/archaealTIGRFAMsTIGR01020TIGR01020coord: 36..243
score: 7.0
IPR013810Ribosomal protein S5, N-terminalPFAMPF00333Ribosomal_S5coord: 83..147
score: 1.9
IPR013810Ribosomal protein S5, N-terminalPROFILEPS50881S5_DSRBDcoord: 83..146
score: 22
IPR014720Double-stranded RNA-binding domainGENE3DG3DSA:3.30.160.20coord: 80..145
score: 3.9
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 154..229
score: 3.9
IPR018192Ribosomal protein S5, N-terminal, conserved sitePROSITEPS00585RIBOSOMAL_S5coord: 100..132
scor
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 159..239
score: 1.57
NoneNo IPR availableunknownCoilCoilcoord: 264..272
scor
NoneNo IPR availablePANTHERPTHR13718:SF69SUBFAMILY NOT NAMEDcoord: 3..265
score: 1.6E
NoneNo IPR availableunknownSSF54768dsRNA-binding domain-likecoord: 79..148
score: 7.85

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006116Cla97C04G070410Watermelon (97103) v2wmwmbB293
Cla006116ClCG04G003240Watermelon (Charleston Gray)wcgwmB257
Cla006116CSPI04G10680Wild cucumber (PI 183967)cpiwmB344
Cla006116CsGy4G010310Cucumber (Gy14) v2cgybwmB313
Cla006116CsaV3_4G011790Cucumber (Chinese Long) v3cucwmB354
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None