Cla006115 (gene) Watermelon (97103) v1

Overview
NameCla006115
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr4 : 13643022 .. 13643549 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAGCATGGGAGAATTAACAACGACAGCCGAAATGACCGAGGTATTTACGTGATTAACTTTCTACACATTATTTACATATCTATCCTAACACAATTCCATTGTTGTATAGGAACGGAAGGTGATGCCTGACCGTCGGAAGAGATCTAAGCTGACGAGGTTTTCACCGGAAGATGTGAAGAGGCAGAAGAGGGAGCCAACATCCTCCAAACCCGTTCCCCCCTCACAACCTTCCCCACCTTCCCAACCTCCACCGTCCAAATCCCAAACCTCCGAACTTTCTCCTTCCAATCTCCTCAACCAATTCTCCAAACCTCCGAACCCTCCAAACCTTCCCAACCATCACCTTCCAAACCTTCCAAACATCAACCTTCCCAACCTCCACAACAAACTCCCCAAACCTCCCAACCTCCACCTTCCCAATCTCCACCTTCTCAACCTCCACCTTCCCAACCTCCACTACCAACTCCCGACTCCCAACCTCCACCTCCACCTGCCCAACCCCAACCCCCTCCCCAACTTATAG

mRNA sequence

ATGAGGAGCATGGGAGAATTAACAACGACAGCCGAAATGACCGAGGAACGGAAGGTGATGCCTGACCGTCGGAAGAGATCTAAGCTGACGAGGTTTTCACCGGAAGATGTGAAGAGGCAGAAGAGGGAGCCAACATCCTCCAAACCCGTTCCCCCCTCACAACCTTCCCCACCTTCCCAACCTCCACCGTCCAAATCCCAAACCTCCGAACTTTCTCCTTCCAATCTCCTCAACCAATTCTCCAAACCTCCGAACCCTCCAAACCTTCCCAACCATCACCTTCCAAACCTTCCAAACATCAACCTTCCCAACCTCCACAACAAACTCCCCAAACCTCCCAACCTCCACCTTCCCAATCTCCACCTTCTCAACCTCCACCTTCCCAACCTCCACTACCAACTCCCGACTCCCAACCTCCACCTCCACCTGCCCAACCCCAACCCCCTCCCCAACTTATAG

Coding sequence (CDS)

ATGAGGAGCATGGGAGAATTAACAACGACAGCCGAAATGACCGAGGAACGGAAGGTGATGCCTGACCGTCGGAAGAGATCTAAGCTGACGAGGTTTTCACCGGAAGATGTGAAGAGGCAGAAGAGGGAGCCAACATCCTCCAAACCCGTTCCCCCCTCACAACCTTCCCCACCTTCCCAACCTCCACCGTCCAAATCCCAAACCTCCGAACTTTCTCCTTCCAATCTCCTCAACCAATTCTCCAAACCTCCGAACCCTCCAAACCTTCCCAACCATCACCTTCCAAACCTTCCAAACATCAACCTTCCCAACCTCCACAACAAACTCCCCAAACCTCCCAACCTCCACCTTCCCAATCTCCACCTTCTCAACCTCCACCTTCCCAACCTCCACTACCAACTCCCGACTCCCAACCTCCACCTCCACCTGCCCAACCCCAACCCCCTCCCCAACTTATAG

Protein sequence

MRSMGELTTTAEMTEERKVMPDRRKRSKLTRFSPEDVKRQKREPTSSKPVPPSQPSPPSQPPPSKSQTSELSPSNLLNQFSKPPNPPNLPNHHLPNLPNINLPNLHNKLPKPPNLHLPNLHLLNLHLPNLHYQLPTPNLHLHLPNPNPLPNL
Homology
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BLAST of Cla006115 vs. TrEMBL
Match: A0A0M8XMH7_9ACTN (Uncharacterized protein OS=Micromonospora sp. NRRL B-16802 GN=ADK66_17150 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 48/130 (36.92%), Postives = 64/130 (49.23%), Query Frame = 1 

Query: 37  VKRQKREPTSSKPV--PPSQPSPPSQPPPSKSQTSELSPSNLLNQFSKPPNPPNLPNHHL 96
           V+R      S  P   PP+ P+PPS PPPS    S   P    N   +PPN  N  N + 
Sbjct: 231 VRRDNPSTVSPPPPAPPPAPPAPPSAPPPSAPPPSAPPPPGGPN--VRPPNFNNASNGNG 290

Query: 97  PNLPNINLPNLHNKLPKP----------PNLHLPNLHLLNLHLPNLHYQLPTPNL-HLHL 153
            N PN++LPN     P+P          P L+LPN+   N+  P     +P PN  +L++
Sbjct: 291 SNGPNLSLPN-PPPTPRPNGNATTGPNGPALNLPNVPNPNVPRPT----VPNPNAPNLNV 350

The following BLAST results are available for this feature:
BLAST of Cla006115 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0M8XMH7_9ACTN1.6e-0636.92Uncharacterized protein OS=Micromonospora sp. NRRL B-16802 GN=ADK66_17150 PE=4 S... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006115Cla006115.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006115Watermelon (Charleston Gray)wcgwmB257
Cla006115Cucumber (Gy14) v2cgybwmB313
Cla006115Cucumber (Chinese Long) v3cucwmB354
Cla006115Watermelon (97103) v2wmwmbB293