Cla006107 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006107
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	FRIGIDA-like protein (AHRD V1 ***- F2WNM1_AQUFO); contains Interpro domain(s) IPR012474 Frigida-like
Location	Chr4 : 13393306 .. 13394343 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTCATGCCAAATGTCTCCATGGCTGCCGCTGTTGATTCCTTCATCGAACCCATGAAGGAGGAACAACAACAACAACATTCAGAGGCATCGAAAACTGATGAACGATTGGGGAAAGAACCATGTCAATTACGAGAACTCGGATCAGAATCAGAGCCTCAGGAAGCTTCATTTCAGTTTCTGAAAATTTCATATGTTGATGAACTTGGCAGCTTATCGAGTGCAATTCATGCATTCCAGTGCCGCTTGAATGAATTGCAGGACCATCTAGGTTTCATTCACAACGCCATAGATTCTCGTTCGAAGCAACATATATCCTTGTCCAGTTCTTCTTCTATCGTCGCAACAGCAGAAAGTGGACCAAATCCCGTTTCTTCGCCCACCCATCTGTCGTCTAGTCCTAGAATCAATCTCCCTGAAACTAGTAGCGATTTTGGTAAAATTGACGGAAAAGAAGGCGTAAATAAGCAACCAGAATCCTCCTCTCTCTCTGAGCTTGAGCATCTCTGCCAAACCATGTGCAGCCGTGGCCTACGCAAGTACATAGTTTCTCATCTCTCGGACCTGGCTAGCCTCCGGCATGAAATTCCGCTTGCTCTAAAATGTGCTCCCAATCCGGCCAAACTCGTGTTCGATTGCATTGGCCGTTTTTATCTCCAGGGCAGCAAAGCCTACAGCAAGGATTCTCCTATGATTCCTGCTAGGCAAGCCTCCATCCTCATCCTAGAACTTTTTCTGATCTCAGGTGCAGCTGAGACTAAAAATGAGAAAAGAACAGAAATTGAGCCCTCCTTGAAGATGGAAGCTGACCTTGCTGCCATTGCCTGGAGAAAAAGACTTGTTAATGAAAGTGGTTCCTGTCAGGCTAGCGACATAGATGCCAGGGGGTTGCTTCTTTTTCTTGCGTCTTTTGGAATTCCAACTGTATTTACAAACGATGATTTAAGGGATCTCTTACGATCAAGTAATTCCAAGGGAATATCGAAGGCTCTTCGCCGTTCACATTGTCTTCTAACACGTATTCCAGGTATGTAA

mRNA sequence

ATGTCACTCATGCCAAATGTCTCCATGGCTGCCGCTGTTGATTCCTTCATCGAACCCATGAAGGAGGAACAACAACAACAACATTCAGAGGCATCGAAAACTGATGAACGATTGGGGAAAGAACCATGTCAATTACGAGAACTCGGATCAGAATCAGAGCCTCAGGAAGCTTCATTTCAGTTTCTGAAAATTTCATATGTTGATGAACTTGGCAGCTTATCGAGTGCAATTCATGCATTCCAGTGCCGCTTGAATGAATTGCAGGACCATCTAGGTTTCATTCACAACGCCATAGATTCTCGTTCGAAGCAACATATATCCTTGTCCAGTTCTTCTTCTATCGTCGCAACAGCAGAAAGTGGACCAAATCCCGTTTCTTCGCCCACCCATCTGTCGTCTAGTCCTAGAATCAATCTCCCTGAAACTAGTAGCGATTTTGGTAAAATTGACGGAAAAGAAGGCGTAAATAAGCAACCAGAATCCTCCTCTCTCTCTGAGCTTGAGCATCTCTGCCAAACCATGTGCAGCCGTGGCCTACGCAAGTACATAGTTTCTCATCTCTCGGACCTGGCTAGCCTCCGGCATGAAATTCCGCTTGCTCTAAAATGTGCTCCCAATCCGGCCAAACTCGTGTTCGATTGCATTGGCCGTTTTTATCTCCAGGGCAGCAAAGCCTACAGCAAGGATTCTCCTATGATTCCTGCTAGGCAAGCCTCCATCCTCATCCTAGAACTTTTTCTGATCTCAGGTGCAGCTGAGACTAAAAATGAGAAAAGAACAGAAATTGAGCCCTCCTTGAAGATGGAAGCTGACCTTGCTGCCATTGCCTGGAGAAAAAGACTTGTTAATGAAAGTGGTTCCTGTCAGGCTAGCGACATAGATGCCAGGGGGTTGCTTCTTTTTCTTGCGTCTTTTGGAATTCCAACTGTATTTACAAACGATGATTTAAGGGATCTCTTACGATCAAGTAATTCCAAGGGAATATCGAAGGCTCTTCGCCGTTCACATTGTCTTCTAACACGTATTCCAGGTATGTAA

Coding sequence (CDS)

ATGTCACTCATGCCAAATGTCTCCATGGCTGCCGCTGTTGATTCCTTCATCGAACCCATGAAGGAGGAACAACAACAACAACATTCAGAGGCATCGAAAACTGATGAACGATTGGGGAAAGAACCATGTCAATTACGAGAACTCGGATCAGAATCAGAGCCTCAGGAAGCTTCATTTCAGTTTCTGAAAATTTCATATGTTGATGAACTTGGCAGCTTATCGAGTGCAATTCATGCATTCCAGTGCCGCTTGAATGAATTGCAGGACCATCTAGGTTTCATTCACAACGCCATAGATTCTCGTTCGAAGCAACATATATCCTTGTCCAGTTCTTCTTCTATCGTCGCAACAGCAGAAAGTGGACCAAATCCCGTTTCTTCGCCCACCCATCTGTCGTCTAGTCCTAGAATCAATCTCCCTGAAACTAGTAGCGATTTTGGTAAAATTGACGGAAAAGAAGGCGTAAATAAGCAACCAGAATCCTCCTCTCTCTCTGAGCTTGAGCATCTCTGCCAAACCATGTGCAGCCGTGGCCTACGCAAGTACATAGTTTCTCATCTCTCGGACCTGGCTAGCCTCCGGCATGAAATTCCGCTTGCTCTAAAATGTGCTCCCAATCCGGCCAAACTCGTGTTCGATTGCATTGGCCGTTTTTATCTCCAGGGCAGCAAAGCCTACAGCAAGGATTCTCCTATGATTCCTGCTAGGCAAGCCTCCATCCTCATCCTAGAACTTTTTCTGATCTCAGGTGCAGCTGAGACTAAAAATGAGAAAAGAACAGAAATTGAGCCCTCCTTGAAGATGGAAGCTGACCTTGCTGCCATTGCCTGGAGAAAAAGACTTGTTAATGAAAGTGGTTCCTGTCAGGCTAGCGACATAGATGCCAGGGGGTTGCTTCTTTTTCTTGCGTCTTTTGGAATTCCAACTGTATTTACAAACGATGATTTAAGGGATCTCTTACGATCAAGTAATTCCAAGGGAATATCGAAGGCTCTTCGCCGTTCACATTGTCTTCTAACACGTATTCCAGGTATGTAA

Protein sequence

MSLMPNVSMAAAVDSFIEPMKEEQQQQHSEASKTDERLGKEPCQLRELGSESEPQEASFQFLKISYVDELGSLSSAIHAFQCRLNELQDHLGFIHNAIDSRSKQHISLSSSSSIVATAESGPNPVSSPTHLSSSPRINLPETSSDFGKIDGKEGVNKQPESSSLSELEHLCQTMCSRGLRKYIVSHLSDLASLRHEIPLALKCAPNPAKLVFDCIGRFYLQGSKAYSKDSPMIPARQASILILELFLISGAAETKNEKRTEIEPSLKMEADLAAIAWRKRLVNESGSCQASDIDARGLLLFLASFGIPTVFTNDDLRDLLRSSNSKGISKALRRSHCLLTRIPGM

Homology

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BLAST of Cla006107 vs. Swiss-Prot
Match: FRIGI_ARATH (Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.2e-52
Identity = 127/299 (42.47%), Postives = 179/299 (59.87%), Query Frame = 1


Query: 48  LGSESEPQEASFQFLKISYVDELGSLSSAIHAFQCRLNELQDHLGFIHNAIDSRSKQHIS 107
           +G   +PQ     FLK   +DEL + S A+  F+ + ++LQ H+  I NAIDS+      
Sbjct: 47  IGQSKQPQ-----FLKS--IDELAAFSVAVETFKRQFDDLQKHIESIENAIDSK------ 106

Query: 108 LSSSSSIVATAESG-PNPVSSPTHLSSSPRINLPETSSDFGKIDGKEGVNKQPESSSLSE 167
           L S+  ++A   +    P+ SP      PR N+   ++       +E V   PE+S+  E
Sbjct: 107 LESNGVVLAARNNNFHQPMLSP------PRNNVSVETTVTVSQPSQEIV---PETSNKPE 166

Query: 168 LEHLCQTMCSRGLRKYIVSHLSDLASLRHEIPLALKCAPNPAKLVFDCIGRFYLQGSKAY 227
              +C+ MCS+GLRKYI +++SD A L  EIP ALK A  PAK V DCIG+FYLQG +A+
Sbjct: 167 GGRMCELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGRRAF 226

Query: 228 SKDSPMIPARQASILILELFLISGAAETKNEKRTEIEPSLKMEADLAAIAWRKRLVNESG 287
           +K+SPM  ARQ S+LILE FL+      + + + +IE  +K EA+ AA+AWRKRL+ E G
Sbjct: 227 TKESPMSSARQVSLLILESFLL---MPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGG 286

Query: 288 SCQASDIDARGLLLFLASFGIPTVFTNDDLRDLLRSSNSKGISKALRRSHCLLTRIPGM 346
              A  +DARGLLL +A FG+P+ F + DL DL+R S S  I+ AL+RS  L+  + G+
Sbjct: 287 LAAAEKMDARGLLLLVACFGVPSNFRSTDLLDLIRMSGSNEIAGALKRSQFLVPMVSGI 320

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BLAST of Cla006107 vs. Swiss-Prot
Match: FRIG0_ARATH (Inactive protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 4.8e-52
Identity = 126/289 (43.60%), Postives = 175/289 (60.55%), Query Frame = 1


Query: 48  LGSESEPQEASFQFLKISYVDELGSLSSAIHAFQCRLNELQDHLGFIHNAIDSRSKQHIS 107
           +G   +PQ     FLK   +DEL + S A+  F+ + ++LQ H+  I NAIDS+      
Sbjct: 47  IGQSKQPQ-----FLKS--IDELAAFSVAVETFKRQFDDLQKHIESIENAIDSK------ 106

Query: 108 LSSSSSIVATAESG-PNPVSSPTHLSSSPRINLPETSSDFGKIDGKEGVNKQPESSSLSE 167
           L S+  ++A   +    P+ SP      PR N+   ++       +E V   PE+S+  E
Sbjct: 107 LESNGVVLAARNNNFHQPMLSP------PRNNVSVETTVTVSQPSQEIV---PETSNKPE 166

Query: 168 LEHLCQTMCSRGLRKYIVSHLSDLASLRHEIPLALKCAPNPAKLVFDCIGRFYLQGSKAY 227
            E +C+ MCS+GLRKYI +++SD A L  EIP ALK A  PAK V DCIG+FYLQG +A+
Sbjct: 167 GERICELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGRRAF 226

Query: 228 SKDSPMIPARQASILILELFLISGAAETKNEKRTEIEPSLKMEADLAAIAWRKRLVNESG 287
           +K+SPM  ARQ S+LILE FL+      + + + +IE  +K EA+ AA+AWRKRL+ E G
Sbjct: 227 TKESPMSSARQVSLLILESFLL---MPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGG 286

Query: 288 SCQASDIDARGLLLFLASFGIPTVFTNDDLRDLLRSSNSKGISKALRRS 336
              A  +DARGLLL +A FG+P+ F + DL DL+R S S  I+ AL+RS
Sbjct: 287 LAAAEKMDARGLLLLVACFGVPSNFRSTDLLDLIRMSGSNEIAGALKRS 310

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BLAST of Cla006107 vs. Swiss-Prot
Match: FRL3_ARATH (FRIGIDA-like protein 3 OS=Arabidopsis thaliana GN=FRL3 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-14
Identity = 55/189 (29.10%), Postives = 91/189 (48.15%), Query Frame = 1


Query: 160 ESSSLSELEHLCQTMCSRGLRKYIVSHLSDLASLRHEIPLALKCAPNPAKLVFDCIGRFY 219
           E  +  +L  LC  M S GL K++  +  +LASL+ EIP+A + A NPA LV D +  FY
Sbjct: 168 EVKAYPQLLKLCGDMDSTGLHKFVSDNRKNLASLKEEIPMAFRAAANPASLVLDSLEGFY 227

Query: 220 LQGSKAY--SKDSPMIPARQASILILELFLISGAAETKNEKRTEIEPSLKMEADLAAIAW 279
              +      KD+ ++  R+  I+++E   I  +   +N     +  ++K  A   A  W
Sbjct: 228 PMEAPTADGKKDANLLGMRRTCIMLMECLSILLSGLDRNCLAVVLSQNVKHRAKTIAEGW 287

Query: 280 RKRLVN-ESGSCQASDIDARGLLLFLASFGIPTVFTNDDLRDLLRSSNSKGISKALRRSH 339
              L + +  +C  + ++A   L  LA+F I   F  D+L  L+   + +  +  L RS 
Sbjct: 288 NPLLESLDMDACNGNSLEAHAFLQLLATFAIVADFKEDELLKLIPMVSRRRQAAELCRSL 347

Query: 340 CLLTRIPGM 346
            L  ++PG+
Sbjct: 348 GLAEKMPGV 356

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BLAST of Cla006107 vs. Swiss-Prot
Match: FRL2A_ARATH (FRIGIDA-like protein 2 OS=Arabidopsis thaliana GN=FRL2 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.0e-09
Identity = 57/246 (23.17%), Postives = 106/246 (43.09%), Query Frame = 1


Query: 75  SAIHAFQCRLNELQDHLGFIHNAIDSRSKQHISLSSSSSIVATAESGPNPVSSPTHLSSS 134
           +A  +    +N++ +    +  A D   + H SL S S  ++ +E   +  S  + L + 
Sbjct: 2   TAAESIAASINQIDEKKQKLKKAFDDL-QAHRSLLSPSFNLSWSEIDSHFSSLQSSLFN- 61

Query: 135 PRINLPETSSDFGKIDGKEGVNKQPESSSLSELEHLCQTMCSRGLRKYIVSHLSDLASLR 194
            R+    TSS+ G I+    V  +       EL   C+    +GL  Y++ +     S+ 
Sbjct: 62  -RLQSAVTSSNSGNIETPTAVTTETPVL-WPELRKFCEKNDGKGLGNYMIENSRKRLSIN 121

Query: 195 HEIPLALKCAPNPAKLVFDCIGRFYLQGSKAYSKDSPMIPARQASILILELFLISGAAET 254
            E+P A++C+ NPA LV D I   Y   S + S  +  I  ++  +L+LE  +       
Sbjct: 122 EELPNAIRCSENPAALVLDAIEGSYHCSSPSSSSSARAIDVKRIFVLLLEALI------- 181

Query: 255 KNEKRTEIEPSLKMEADLAAIAWRKRLVNESGSCQASDIDARGLLLFLASFGIPTVFTND 314
             E    +   L+  A   A  W+  + N+         +A G L  +A+F + ++F+ +
Sbjct: 182 --EINANLTNDLRERARTIAYDWKPNIGNKPS-------EALGFLHLVAAFELGSLFSTE 227

Query: 315 DLRDLL 321
           ++ D +
Sbjct: 242 EICDYI 227

[Close]

BLAST of Cla006107 vs. Swiss-Prot
Match: FRL2I_ARATH (Inactive FRIGIDA-like protein 2 OS=Arabidopsis thaliana GN=FRL2 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.0e-09
Identity = 57/246 (23.17%), Postives = 106/246 (43.09%), Query Frame = 1


Query: 75  SAIHAFQCRLNELQDHLGFIHNAIDSRSKQHISLSSSSSIVATAESGPNPVSSPTHLSSS 134
           +A  +    +N++ +    +  A D   + H SL S S  ++ +E   +  S  + L + 
Sbjct: 2   TAAESIAASINQIDEKKQKLKKAFDDL-QAHRSLLSPSFNLSWSEIDSHFSSLQSSLFN- 61

Query: 135 PRINLPETSSDFGKIDGKEGVNKQPESSSLSELEHLCQTMCSRGLRKYIVSHLSDLASLR 194
            R+    TSS+ G I+    V  +       EL   C+    +GL  Y++ +     S+ 
Sbjct: 62  -RLQSAVTSSNSGNIETPTAVTTETPVL-WPELRKFCEKNDGKGLGNYMIENSRKRLSIN 121

Query: 195 HEIPLALKCAPNPAKLVFDCIGRFYLQGSKAYSKDSPMIPARQASILILELFLISGAAET 254
            E+P A++C+ NPA LV D I   Y   S + S  +  I  ++  +L+LE  +       
Sbjct: 122 EELPNAIRCSENPAPLVLDAIEGSYHCSSPSSSSSARAIDVKRIFVLLLEALI------- 181

Query: 255 KNEKRTEIEPSLKMEADLAAIAWRKRLVNESGSCQASDIDARGLLLFLASFGIPTVFTND 314
             E    +   L+  A   A  W+  + N+         +A G L  +A+F + ++F+ +
Sbjct: 182 --EINANLTNDLRERARTIAYDWKPNIGNKPS-------EALGFLHLVAAFELGSLFSTE 227

Query: 315 DLRDLL 321
           ++ D +
Sbjct: 242 EICDYI 227

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BLAST of Cla006107 vs. TrEMBL
Match: A0A0A0KYX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437530 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 4.3e-108
Identity = 204/235 (86.81%), Postives = 216/235 (91.91%), Query Frame = 1


Query: 109 SSSSSIVATAESGPNPVSSPTHLSSSPRINLPETSSDFGKIDGKEGVNKQPESSSLSELE 168
           S+SS +V TAESG NPV S THLS S R NLPET +DFGK+DGKEGV+KQPESSSLS+LE
Sbjct: 35  SNSSPLVPTAESGRNPVYSSTHLSRSSRSNLPETRTDFGKVDGKEGVDKQPESSSLSQLE 94

Query: 169 HLCQTMCSRGLRKYIVSHLSDLASLRHEIPLALKCAPNPAKLVFDCIGRFYLQGSKAYSK 228
           HLC+TMCSRGLRKYIVSHLSDLA L HEIPLALK APNPAKLVFDCIGRFYLQGSKAY+K
Sbjct: 95  HLCRTMCSRGLRKYIVSHLSDLARLHHEIPLALKWAPNPAKLVFDCIGRFYLQGSKAYTK 154

Query: 229 DSPMIPARQASILILELFLISGAAETKNEKRTEIEPSLKMEADLAAIAWRKRLVNESGSC 288
            SPMIPARQASILILELFLISGAAETKN+KRTEIE SLK+EADLAAIAWRKRL+ ESGSC
Sbjct: 155 VSPMIPARQASILILELFLISGAAETKNDKRTEIESSLKVEADLAAIAWRKRLITESGSC 214

Query: 289 QASDIDARGLLLFLASFGIPTVFTNDDLRDLLRSSNSKGISKALRRSHCLLTRIP 344
           QASDIDARGLLLFLASFGIPTVFTNDDLRDLLRSSNSKG+S AL  SHCL TRIP
Sbjct: 215 QASDIDARGLLLFLASFGIPTVFTNDDLRDLLRSSNSKGLSNALCHSHCLRTRIP 269

[Close]

BLAST of Cla006107 vs. TrEMBL
Match: A0A0A0KYX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437530 PE=4 SV=1)

HSP 1 Score: 37.0 bits (84), Expect = 5.6e+01
Identity = 22/46 (47.83%), Postives = 27/46 (58.70%), Query Frame = 1


Query: 9  MAAAVDSFIEPMKEEQQQQHSEASKTDERLGKEPCQLRELGSESEP 55
          MAA VDS        ++++HSE   TD RLG+ PCQL  L S S P
Sbjct: 4  MAATVDS-------SKEEEHSE---TDSRLGEGPCQLSSLFSNSSP 39

HSP 2 Score: 254.6 bits (649), Expect = 1.7e-64
Identity = 146/328 (44.51%), Postives = 201/328 (61.28%), Query Frame = 1


Query: 17  IEPMKEEQQQQHSEASKTDERLGKEPCQLRELGSESEPQEASFQFLKISYVDELGSLSSA 76
           +EP + EQQQQ  E  + +++  KEP                 QFL+   +++L +LSS 
Sbjct: 48  VEPEQNEQQQQPQEEEE-EQQQQKEP-----------------QFLQS--INDLATLSSV 107

Query: 77  IHAFQCRLNELQDHLGFIHNAIDSRSKQHISLSSSSSIVATAESGPNPVSSPTHLSSSPR 136
           IHAF+CR  EL++HL FI+ AIDS+  +              E  P   + P        
Sbjct: 108 IHAFKCRFEELKEHLEFINQAIDSKFNE-----------PQKEQRPKIETQP-------- 167

Query: 137 INLPETSSDFGKIDGKEGVNKQPESSSLSELEHLCQTMCSRGLRKYIVSHLSDLASLRHE 196
              P  S++      K G    P  SS SE+++LC+ MCS+GLRKYI +HLS+++ LR E
Sbjct: 168 ---PAKSTETDNKTEKTGPETTPSKSSRSEIQNLCEMMCSKGLRKYIAAHLSNVSKLREE 227

Query: 197 IPLALKCAPNPAKLVFDCIGRFYLQGSKAYSKDSPMIPARQASILILELFLI-SGAAETK 256
           +P AL  AP PAKLV DCIGRF+LQG KAY+KDSPMIPARQAS+L+LE FL+  G    K
Sbjct: 228 VPAALTLAPKPAKLVLDCIGRFFLQGIKAYTKDSPMIPARQASVLVLEFFLLMMGGFRGK 287

Query: 257 NEKRTEIEPSLKMEADLAAIAWRKRLVNESGSCQASDIDARGLLLFLASFGIPTVFTNDD 316
            E   +I   +K+EA+  A+AWRKRL++E G  +AS++DARGLLL++A FGIP  F ++D
Sbjct: 288 GE--VQIAADIKLEAEKGALAWRKRLISEGGLARASEVDARGLLLYVACFGIPKAFRSED 331

Query: 317 LRDLLRSSNSKGISKALRRSHCLLTRIP 344
           L +LLR  N + I+ AL+ SH L  ++P
Sbjct: 348 LGNLLRLCNLRAIADALKGSHVLPVKMP 331

[Close]

BLAST of Cla006107 vs. TrEMBL
Match: A5AYD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004504 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 3.8e-64
Identity = 148/280 (52.86%), Postives = 181/280 (64.64%), Query Frame = 1


Query: 67  VDELGSLSSAIHAFQCRLNELQDHLGFIHNAIDSRSKQHISLSSSSSIVATAESGPNPVS 126
           V+EL +LS+ +HAF+ R +ELQ HL FI +AI SRS++   L +S        S     S
Sbjct: 37  VNELRNLSTVLHAFRRRWDELQKHLDFIQDAIASRSRE---LDASPQHHQALASNTLETS 96

Query: 127 SP--THLSSSPRINLPETSSDFGKIDGKEGVNKQPESSSLSELEHLCQTMCSRGLRKYIV 186
           SP    L S P                       P  +S+SEL  LC  M SRGLRKYI+
Sbjct: 97  SPESADLHSEP----------------------MPAQTSVSELGFLCGMMRSRGLRKYII 156

Query: 187 SHLSDLASLRHEIPLALKCAPNPAKLVFDCIGRFYLQGSKAYSKDSPMIPARQASILILE 246
           SHLSD+A LR E+P ALK AP PAKLV +CIGRF+LQGSKA+ K + M+P+RQAS+LILE
Sbjct: 157 SHLSDVAKLREEVPAALKGAPKPAKLVLECIGRFFLQGSKAFGKATHMVPSRQASLLILE 216

Query: 247 LFLISGAAETKNEKRTEIEPSLKMEADLAAIAWRKRLVNESGSCQASDIDARGLLLFLAS 306
            FL+S          TE+EPS+K EADLAA+ WRKRL+NE G   ASDIDARGLLL +AS
Sbjct: 217 FFLLSDC--------TEMEPSVKEEADLAAVTWRKRLINEGGVSNASDIDARGLLLLVAS 276

Query: 307 FGIPTVFTNDDLRDLLRSSNSKGISKALRRSHCLLTRIPG 345
           FGIP +F N+DLR+L+R S  K IS  LRRS  LL R+PG
Sbjct: 277 FGIPALFRNEDLRNLIRLSCPKEISDVLRRSRFLLARVPG 283

[Close]

BLAST of Cla006107 vs. TrEMBL
Match: F6H2J3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00030 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 6.5e-64
Identity = 148/279 (53.05%), Postives = 181/279 (64.87%), Query Frame = 1


Query: 67  VDELGSLSSAIHAFQCRLNELQDHLGFIHNAIDSRSKQHISLSSSSSIVATAESGPNPVS 126
           V+EL +LS+ +HAF+ R +ELQ HL FI +AI SRS++   L +S        S     S
Sbjct: 37  VNELRNLSTVLHAFRRRWDELQKHLDFIQDAIASRSRE---LDASPQHHQALASNTLETS 96

Query: 127 SP--THLSSSPRINLPETSSDFGKIDGKEGVNKQPESSSLSELEHLCQTMCSRGLRKYIV 186
           SP    L S P                       P  +S+SEL  LC  M SRGLRKYI+
Sbjct: 97  SPESADLHSEP----------------------MPAQTSVSELGFLCGMMRSRGLRKYII 156

Query: 187 SHLSDLASLRHEIPLALKCAPNPAKLVFDCIGRFYLQGSKAYSKDSPMIPARQASILILE 246
           SHLSD+A LR E+P ALK AP PAKLV +CIGRF+LQGSKA+ K + M+P+RQAS+LILE
Sbjct: 157 SHLSDVAKLREEVPAALKGAPKPAKLVLECIGRFFLQGSKAFGKATHMVPSRQASLLILE 216

Query: 247 LFLISGAAETKNEKRTEIEPSLKMEADLAAIAWRKRLVNESGSCQASDIDARGLLLFLAS 306
            FL+S          TE+EPS+K EADLAA+ WRKRL+NE G   ASDIDARGLLL +AS
Sbjct: 217 FFLLSDC--------TEMEPSVKEEADLAAVTWRKRLINEGGVSNASDIDARGLLLLVAS 276

Query: 307 FGIPTVFTNDDLRDLLRSSNSKGISKALRRSHCLLTRIP 344
           FGIP +F N+DLR+L+R S  K IS ALRRS  LL R+P
Sbjct: 277 FGIPALFRNEDLRNLIRLSCPKEISDALRRSRFLLARVP 282

[Close]

BLAST of Cla006107 vs. TrEMBL
Match: V7B009_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G159400g PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 3.2e-63
Identity = 142/276 (51.45%), Postives = 193/276 (69.93%), Query Frame = 1


Query: 67  VDELGSLSSAIHAFQCRLNELQDHLGFIHNAIDSRSKQHISLSSSSSIVATAESGPNPVS 126
           V++L +LS AI  F+ R +ELQ HL FI +AID+R+K+ + LS S++     E+    VS
Sbjct: 30  VNQLNNLSIAIQTFKSRYDELQRHLDFIEHAIDARTKE-LQLSGSNASPNAKETTEASVS 89

Query: 127 SPTHLSSSPRINLPETSSDFGKIDGKEGVNKQPESSSLSELEHLCQTMCSRGLRKYIVSH 186
                 S    ++P+ +    +  G+E   K+ E     EL  LC+TM SRGLRKY++S 
Sbjct: 90  QS---DSGKTDSIPKPNPKAEEEGGEEEKVKEEEKEE-DELLSLCKTMNSRGLRKYVLSR 149

Query: 187 LSDLASLRHEIPLALKCAPNPAKLVFDCIGRFYLQGSKAYSKDSPMIPARQASILILELF 246
           LS+ ASLR ++P+ALK AP P+KLVF+CIGRF+LQGSKAY+KDSPMIPARQ S+L+LE +
Sbjct: 150 LSETASLREQVPVALKSAPKPSKLVFECIGRFFLQGSKAYTKDSPMIPARQVSVLVLEYY 209

Query: 247 LISGAAETKNEKRTEIEPSLKMEADLAAIAWRKRLVNESGSCQASDIDARGLLLFLASFG 306
           L+SG     NE+  E+E SLK EAD AA+AWRKRL+ E G  +AS+IDARGL+LF+A FG
Sbjct: 210 LLSG--RVGNEE--EVEASLKKEADSAAVAWRKRLIVEGGLSKASEIDARGLILFVAGFG 269

Query: 307 IPTVFTNDDLRDLLRSSNSKGISKALRRSHCLLTRI 343
           IP VF ++D+ +L+  SN + IS ALR+S  LL R+
Sbjct: 270 IPGVFRDEDICNLVSVSNGREISDALRQSQLLLKRV 296

[Close]

BLAST of Cla006107 vs. NCBI nr
Match: gi|659069372|ref|XP_008449489.1| (PREDICTED: protein FRIGIDA [Cucumis melo])

HSP 1 Score: 511.5 bits (1316), Expect = 1.1e-141
Identity = 272/351 (77.49%), Postives = 293/351 (83.48%), Query Frame = 1


Query: 9   MAAAVDSFIEPMKEEQQQQHSEASKTDERLGKEPCQLRELGSESEPQEASFQFLKISYVD 68
           MAA VDSF       + ++HSEA     RL + PCQLRELGSES PQ+  F+ LK SY D
Sbjct: 1   MAATVDSF-------KDEEHSEAVS---RLVEGPCQLRELGSESNPQQPPFKLLKNSYFD 60

Query: 69  ELGSLSSAIHAFQCRLNELQDHLGFIHNAIDSRSKQHISLSSS----------------S 128
           ELGSLS+AIHAFQCR NELQDHL FIHNAID+RSKQH+S S+S                S
Sbjct: 61  ELGSLSTAIHAFQCRFNELQDHLCFIHNAIDARSKQHMSSSNSLLDNHSQLLSSLSFKSS 120

Query: 129 SIVATAESGPNPVSSPTHLSSSPRINLPETSSDFGKIDGKEGVNKQPESSSLSELEHLCQ 188
           ++V TAESG NPV S TH S SPR NLPET +  GK+DGKEGV+KQ ESSSLSELEHLCQ
Sbjct: 121 TLVPTAESGRNPVYSSTHPSRSPRSNLPETRTYSGKVDGKEGVDKQTESSSLSELEHLCQ 180

Query: 189 TMCSRGLRKYIVSHLSDLASLRHEIPLALKCAPNPAKLVFDCIGRFYLQGSKAYSKDSPM 248
           TMCSRGLRKYIVSHLSDLA+LRHEIPLALKCAPNPAKLVFDCIGRFYLQGSKAY+KDSPM
Sbjct: 181 TMCSRGLRKYIVSHLSDLANLRHEIPLALKCAPNPAKLVFDCIGRFYLQGSKAYTKDSPM 240

Query: 249 IPARQASILILELFLISGAAETKNEKRTEIEPSLKMEADLAAIAWRKRLVNESGSCQASD 308
           IPARQASILILELFLISGAAETKN+KRTEIE SLK+EADLAAIAWRKRL+ ESGSCQASD
Sbjct: 241 IPARQASILILELFLISGAAETKNDKRTEIESSLKVEADLAAIAWRKRLITESGSCQASD 300

Query: 309 IDARGLLLFLASFGIPTVFTNDDLRDLLRSSNSKGISKALRRSHCLLTRIP 344
           IDARGLLLFLASFGIPTVFTNDDLRDLLRSSNSKG+S AL  SHCL TRIP
Sbjct: 301 IDARGLLLFLASFGIPTVFTNDDLRDLLRSSNSKGLSNALCHSHCLRTRIP 341

[Close]

BLAST of Cla006107 vs. NCBI nr
Match: gi|449453187|ref|XP_004144340.1| (PREDICTED: protein FRIGIDA [Cucumis sativus])

HSP 1 Score: 399.4 bits (1025), Expect = 6.2e-108
Identity = 204/235 (86.81%), Postives = 216/235 (91.91%), Query Frame = 1


Query: 109 SSSSSIVATAESGPNPVSSPTHLSSSPRINLPETSSDFGKIDGKEGVNKQPESSSLSELE 168
           S+SS +V TAESG NPV S THLS S R NLPET +DFGK+DGKEGV+KQPESSSLS+LE
Sbjct: 35  SNSSPLVPTAESGRNPVYSSTHLSRSSRSNLPETRTDFGKVDGKEGVDKQPESSSLSQLE 94

Query: 169 HLCQTMCSRGLRKYIVSHLSDLASLRHEIPLALKCAPNPAKLVFDCIGRFYLQGSKAYSK 228
           HLC+TMCSRGLRKYIVSHLSDLA L HEIPLALK APNPAKLVFDCIGRFYLQGSKAY+K
Sbjct: 95  HLCRTMCSRGLRKYIVSHLSDLARLHHEIPLALKWAPNPAKLVFDCIGRFYLQGSKAYTK 154

Query: 229 DSPMIPARQASILILELFLISGAAETKNEKRTEIEPSLKMEADLAAIAWRKRLVNESGSC 288
            SPMIPARQASILILELFLISGAAETKN+KRTEIE SLK+EADLAAIAWRKRL+ ESGSC
Sbjct: 155 VSPMIPARQASILILELFLISGAAETKNDKRTEIESSLKVEADLAAIAWRKRLITESGSC 214

Query: 289 QASDIDARGLLLFLASFGIPTVFTNDDLRDLLRSSNSKGISKALRRSHCLLTRIP 344
           QASDIDARGLLLFLASFGIPTVFTNDDLRDLLRSSNSKG+S AL  SHCL TRIP
Sbjct: 215 QASDIDARGLLLFLASFGIPTVFTNDDLRDLLRSSNSKGLSNALCHSHCLRTRIP 269

[Close]

BLAST of Cla006107 vs. NCBI nr
Match: gi|449453187|ref|XP_004144340.1| (PREDICTED: protein FRIGIDA [Cucumis sativus])

HSP 1 Score: 37.0 bits (84), Expect = 8.1e+01
Identity = 22/46 (47.83%), Postives = 27/46 (58.70%), Query Frame = 1


Query: 9  MAAAVDSFIEPMKEEQQQQHSEASKTDERLGKEPCQLRELGSESEP 55
          MAA VDS        ++++HSE   TD RLG+ PCQL  L S S P
Sbjct: 4  MAATVDS-------SKEEEHSE---TDSRLGEGPCQLSSLFSNSSP 39

HSP 2 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 147/278 (52.88%), Postives = 185/278 (66.55%), Query Frame = 1


Query: 67  VDELGSLSSAIHAFQCRLNELQDHLGFIHNAIDSRSKQHISLSSSSSIVATAESGPNPVS 126
           ++EL  LSS +  F+ R ++LQ HL  I  AID+R KQ + + ++  +    +  P  V 
Sbjct: 83  INELRVLSSTLTTFKRRWDDLQKHLDSIQTAIDARFKQ-LGIDNTPQL---HQQQPQQVV 142

Query: 127 SP-THLSSSPRINLPETSSDFGKIDGKEGVNKQPESSSLSELEHLCQTMCSRGLRKYIVS 186
           +P T   +S  +     +S  G        +     +S SELE LC T  +RGLRKYI S
Sbjct: 143 APATDARASESLAPDSANSPVGDKTQDSSPSDGTSKNSGSELESLCSTG-NRGLRKYIAS 202

Query: 187 HLSDLASLRHEIPLALKCAPNPAKLVFDCIGRFYLQGSKAYSKDSPMIPARQASILILEL 246
           HL+D+A LR E P ALK A NPAKLV DCIGRFYLQGSKAY+KDSPM+PARQAS+ +LE 
Sbjct: 203 HLADIAKLREEAPAALKRAANPAKLVLDCIGRFYLQGSKAYTKDSPMVPARQASVFLLEF 262

Query: 247 FLISGAAETKNEKRTEIEPSLKMEADLAAIAWRKRLVNESGSCQASDIDARGLLLFLASF 306
           FL++G +E       EIE S+K EA+ AAIAWRKRLVNE G   A+ IDARGLLLF+ SF
Sbjct: 263 FLVAGCSE------NEIEESVKNEAETAAIAWRKRLVNEGGVANANSIDARGLLLFIGSF 322

Query: 307 GIPTVFTNDDLRDLLRSSNSKGISKALRRSHCLLTRIP 344
           G+P+VF NDDL DL+R SN K I+ ALRRSH LL R+P
Sbjct: 323 GVPSVFGNDDLSDLIRLSNPKEIAGALRRSHFLLERVP 349

[Close]

BLAST of Cla006107 vs. NCBI nr
Match: gi|590670963|ref|XP_007038203.1| (FRIGIDA-like protein, putative [Theobroma cacao])

HSP 1 Score: 254.6 bits (649), Expect = 2.5e-64
Identity = 146/328 (44.51%), Postives = 201/328 (61.28%), Query Frame = 1


Query: 17  IEPMKEEQQQQHSEASKTDERLGKEPCQLRELGSESEPQEASFQFLKISYVDELGSLSSA 76
           +EP + EQQQQ  E  + +++  KEP                 QFL+   +++L +LSS 
Sbjct: 48  VEPEQNEQQQQPQEEEE-EQQQQKEP-----------------QFLQS--INDLATLSSV 107

Query: 77  IHAFQCRLNELQDHLGFIHNAIDSRSKQHISLSSSSSIVATAESGPNPVSSPTHLSSSPR 136
           IHAF+CR  EL++HL FI+ AIDS+  +              E  P   + P        
Sbjct: 108 IHAFKCRFEELKEHLEFINQAIDSKFNE-----------PQKEQRPKIETQP-------- 167

Query: 137 INLPETSSDFGKIDGKEGVNKQPESSSLSELEHLCQTMCSRGLRKYIVSHLSDLASLRHE 196
              P  S++      K G    P  SS SE+++LC+ MCS+GLRKYI +HLS+++ LR E
Sbjct: 168 ---PAKSTETDNKTEKTGPETTPSKSSRSEIQNLCEMMCSKGLRKYIAAHLSNVSKLREE 227

Query: 197 IPLALKCAPNPAKLVFDCIGRFYLQGSKAYSKDSPMIPARQASILILELFLI-SGAAETK 256
           +P AL  AP PAKLV DCIGRF+LQG KAY+KDSPMIPARQAS+L+LE FL+  G    K
Sbjct: 228 VPAALTLAPKPAKLVLDCIGRFFLQGIKAYTKDSPMIPARQASVLVLEFFLLMMGGFRGK 287

Query: 257 NEKRTEIEPSLKMEADLAAIAWRKRLVNESGSCQASDIDARGLLLFLASFGIPTVFTNDD 316
            E   +I   +K+EA+  A+AWRKRL++E G  +AS++DARGLLL++A FGIP  F ++D
Sbjct: 288 GE--VQIAADIKLEAEKGALAWRKRLISEGGLARASEVDARGLLLYVACFGIPKAFRSED 331

Query: 317 LRDLLRSSNSKGISKALRRSHCLLTRIP 344
           L +LLR  N + I+ AL+ SH L  ++P
Sbjct: 348 LGNLLRLCNLRAIADALKGSHVLPVKMP 331

[Close]

BLAST of Cla006107 vs. NCBI nr
Match: gi|147844133|emb|CAN80567.1| (hypothetical protein VITISV_004504 [Vitis vinifera])

HSP 1 Score: 253.4 bits (646), Expect = 5.5e-64
Identity = 148/280 (52.86%), Postives = 181/280 (64.64%), Query Frame = 1


Query: 67  VDELGSLSSAIHAFQCRLNELQDHLGFIHNAIDSRSKQHISLSSSSSIVATAESGPNPVS 126
           V+EL +LS+ +HAF+ R +ELQ HL FI +AI SRS++   L +S        S     S
Sbjct: 37  VNELRNLSTVLHAFRRRWDELQKHLDFIQDAIASRSRE---LDASPQHHQALASNTLETS 96

Query: 127 SP--THLSSSPRINLPETSSDFGKIDGKEGVNKQPESSSLSELEHLCQTMCSRGLRKYIV 186
           SP    L S P                       P  +S+SEL  LC  M SRGLRKYI+
Sbjct: 97  SPESADLHSEP----------------------MPAQTSVSELGFLCGMMRSRGLRKYII 156

Query: 187 SHLSDLASLRHEIPLALKCAPNPAKLVFDCIGRFYLQGSKAYSKDSPMIPARQASILILE 246
           SHLSD+A LR E+P ALK AP PAKLV +CIGRF+LQGSKA+ K + M+P+RQAS+LILE
Sbjct: 157 SHLSDVAKLREEVPAALKGAPKPAKLVLECIGRFFLQGSKAFGKATHMVPSRQASLLILE 216

Query: 247 LFLISGAAETKNEKRTEIEPSLKMEADLAAIAWRKRLVNESGSCQASDIDARGLLLFLAS 306
            FL+S          TE+EPS+K EADLAA+ WRKRL+NE G   ASDIDARGLLL +AS
Sbjct: 217 FFLLSDC--------TEMEPSVKEEADLAAVTWRKRLINEGGVSNASDIDARGLLLLVAS 276

Query: 307 FGIPTVFTNDDLRDLLRSSNSKGISKALRRSHCLLTRIPG 345
           FGIP +F N+DLR+L+R S  K IS  LRRS  LL R+PG
Sbjct: 277 FGIPALFRNEDLRNLIRLSCPKEISDVLRRSRFLLARVPG 283

The following BLAST results are available for this feature:

BLAST of Cla006107 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FRIGI_ARATH	2.2e-52	42.47	Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=1 SV=1	[more]
FRIG0_ARATH	4.8e-52	43.60	Inactive protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1	[more]
FRL3_ARATH	1.1e-14	29.10	FRIGIDA-like protein 3 OS=Arabidopsis thaliana GN=FRL3 PE=1 SV=1	[more]
FRL2A_ARATH	3.0e-09	23.17	FRIGIDA-like protein 2 OS=Arabidopsis thaliana GN=FRL2 PE=3 SV=1	[more]
FRL2I_ARATH	3.0e-09	23.17	Inactive FRIGIDA-like protein 2 OS=Arabidopsis thaliana GN=FRL2 PE=2 SV=1	[more]

BLAST of Cla006107 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYX9_CUCSA	4.3e-108	86.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437530 PE=4 SV=1	[more]
A0A0A0KYX9_CUCSA	5.6e+01	47.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437530 PE=4 SV=1	[more]
A5AYD6_VITVI	3.8e-64	52.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004504 PE=4 SV=1	[more]
F6H2J3_VITVI	6.5e-64	53.05	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00030 PE=4 SV=...	[more]
V7B009_PHAVU	3.2e-63	51.45	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G159400g PE=4 SV=1	[more]

BLAST of Cla006107 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069372\|ref\|XP_008449489.1\|	1.1e-141	77.49	PREDICTED: protein FRIGIDA [Cucumis melo]	[more]
gi\|449453187\|ref\|XP_004144340.1\|	6.2e-108	86.81	PREDICTED: protein FRIGIDA [Cucumis sativus]	[more]
gi\|449453187\|ref\|XP_004144340.1\|	8.1e+01	47.83	PREDICTED: protein FRIGIDA [Cucumis sativus]	[more]
gi\|590670963\|ref\|XP_007038203.1\|	2.5e-64	44.51	FRIGIDA-like protein, putative [Theobroma cacao]	[more]
gi\|147844133\|emb\|CAN80567.1\|	5.5e-64	52.86	hypothetical protein VITISV_004504 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012474	Frigida

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU48938	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006107	Cla006107.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU48938	WMU48938	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012474	Frigida-like	PFAM	PF07899	Frigida	coord: 161..345 score: 5.4
None	No IPR available	PANTHER	PTHR31791	FAMILY NOT NAMED	coord: 67..343 score: 1.5
None	No IPR available	PANTHER	PTHR31791:SF3	SUBFAMILY NOT NAMED	coord: 67..343 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006107	Lsi01G020260	Bottle gourd (USVL1VR-Ls)	lsiwmB149

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006107	Silver-seed gourd	carwmB0471
Cla006107	Watermelon (97103) v2	wmwmbB293
Cla006107	Cucumber (Gy14) v1	cgywmB325
Cla006107	Cucurbita maxima (Rimu)	cmawmB834
Cla006107	Cucurbita moschata (Rifu)	cmowmB822
Cla006107	Watermelon (Charleston Gray)	wcgwmB257
Cla006107	Cucumber (Chinese Long) v2	cuwmB336
Cla006107	Cucurbita pepo (Zucchini)	cpewmB497
Cla006107	Cucumber (Gy14) v2	cgybwmB312