Cla006084 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006084
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Conserved domain protein (Fragment) (AHRD V1 -- E2ZEK6_9FIRM)
Location	Chr4 : 12795081 .. 12795640 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCTGACATGAGTGAGATGATGGTTGGCATACAGACAATGACCAACTTACTTAGGTCTTTCTGTCAAGTATGTTCAGTTAATATGTATGTTTCGCTTTATTTTCGTAATTGTTGTTTTCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCCTGGCCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGATATGGATTTTACCAAGACATACCACACGAAGCTAGAGTTGATGGAGACCACCACCCCACTCCCCATTAGGGTTGGCAACCCAGGGGGGGTCCTTGTCCCCGCCCTCGTGGGGGGAACTGACCCACGTGCCACCCCTGTCCCCGCCATTACAGTGGGTAAACTGAGTAAACTGTCATTACAAAATGTACACATGTAA

mRNA sequence

ATGAGGTCTGACATGAGTGAGATGATGGTTGGCATACAGACAATGACCAACTTACTTAGGTCTTTCTGTCAATTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCCTGGCCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGATATGGATTTTACCAAGACATACCACACGAAGCTAGAGTTGATGGAGACCACCACCCCACTCCCCATTAGGGTTGGCAACCCAGGGGGGGTCCTTGTCCCCGCCCTCGTGGGGGGAACTGACCCACGTGCCACCCCTGTCCCCGCCATTACAGTGGGTAAACTGAGTAAACTGTCATTACAAAATGTACACATGTAA

Coding sequence (CDS)

ATGAGGTCTGACATGAGTGAGATGATGGTTGGCATACAGACAATGACCAACTTACTTAGGTCTTTCTGTCAATTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCCTGGCCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGATATGGATTTTACCAAGACATACCACACGAAGCTAGAGTTGATGGAGACCACCACCCCACTCCCCATTAGGGTTGGCAACCCAGGGGGGGTCCTTGTCCCCGCCCTCGTGGGGGGAACTGACCCACGTGCCACCCCTGTCCCCGCCATTACAGTGGGTAAACTGAGTAAACTGTCATTACAAAATGTACACATGTAA

Protein sequence

MRSDMSEMMVGIQTMTNLLRSFCQLRPPFTGASVAGSPVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLCEEAPLLPKLRGYFADMDFTKTYHTKLELMETTTPLPIRVGNPGGVLVPALVGGTDPRATPVPAITVGKLSKLSLQNVHM

Homology

[Close]

BLAST of Cla006084 vs. TrEMBL
Match: S8DAJ4_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00248 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-36
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 1


Query: 25 LRPPFTGASVAGSPVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLCE 84
          LRPPFTGASVAGSPVIRSPTSL FRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC+PLCE
Sbjct: 1  LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60

Query: 85 EAPLLPKLRGYFAD 99
          EAPLLPKLRGYFA+
Sbjct: 61 EAPLLPKLRGYFAE 74

[Close]

BLAST of Cla006084 vs. TrEMBL
Match: A0A166GEI3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001521 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.1e-27
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 41  RSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLCEEAPLLPKLRGYFAD 99
           RSPTSL FRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC+PLCEEAPLLPKLRGYFA+
Sbjct: 199 RSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCEEAPLLPKLRGYFAE 256

[Close]

BLAST of Cla006084 vs. TrEMBL
Match: A0A0B2P353_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_035408 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.4e-26
Identity = 61/75 (81.33%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 24  QLRPPFTGASVAGSPVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLC 83
           QLR PFT ASV GSPVI S TSL FRH AGVSPHTWSYDFAETCVFGKQSP P H + LC
Sbjct: 40  QLRSPFTEASVIGSPVIWSLTSLTFRHLAGVSPHTWSYDFAETCVFGKQSPEPSHNDLLC 99

Query: 84  EEAPLLPKLRGYFAD 99
           EEAPLL KLRGYFA+
Sbjct: 100 EEAPLLSKLRGYFAE 114

[Close]

BLAST of Cla006084 vs. TrEMBL
Match: A0A061S5B2_9CHLO (Cell wall-associated hydrolase OS=Tetraselmis sp. GSL018 GN=TSPGSL018_10404 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 42 SPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC 80
          SPTS  FRHWAGVSPHT SYD AETCVFGKQSPGPGHC
Sbjct: 54 SPTSFTFRHWAGVSPHTLSYDLAETCVFGKQSPGPGHC 91

[Close]

BLAST of Cla006084 vs. TrEMBL
Match: E0XQN0_9BACT (Putative uncharacterized protein OS=uncultured Verrucomicrobiales bacterium HF0010_05E02 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-11
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 1


Query: 20  RSFCQLRPPFTGASVAGS--PVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPG 79
           + F  LR     A + G   P + SP +L F HW+ V+P+T +Y  AE+CVF KQS G  
Sbjct: 19  KEFRYLRTVIVTADIHGGLDPKL-SPQALTFPHWSQVTPYTSTYVLAESCVFAKQSVGLF 78

Query: 80  HCNPLCEEAPLLPKLRGYFADMDFTKTYHTKLELMETTTPLPIRVGNP 126
           HC     +APLLPKLRG FA+    +   T+L ++ + T + +R G P
Sbjct: 79  HCGLARSQAPLLPKLRGNFAEF-LKEVSLTRLRILISDTCVGLRYGRP 124

[Close]

BLAST of Cla006084 vs. NCBI nr
Match: gi|527209922|gb|EPS74531.1| (hypothetical protein M569_00248, partial [Genlisea aurea])

HSP 1 Score: 160.2 bits (404), Expect = 3.0e-36
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 1


Query: 25 LRPPFTGASVAGSPVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLCE 84
          LRPPFTGASVAGSPVIRSPTSL FRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC+PLCE
Sbjct: 1  LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60

Query: 85 EAPLLPKLRGYFAD 99
          EAPLLPKLRGYFA+
Sbjct: 61 EAPLLPKLRGYFAE 74

[Close]

BLAST of Cla006084 vs. NCBI nr
Match: gi|1021051087|gb|KZN08865.1| (hypothetical protein DCAR_001521 [Daucus carota subsp. sativus])

HSP 1 Score: 129.0 bits (323), Expect = 7.4e-27
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 41  RSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLCEEAPLLPKLRGYFAD 99
           RSPTSL FRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC+PLCEEAPLLPKLRGYFA+
Sbjct: 199 RSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCEEAPLLPKLRGYFAE 256

[Close]

BLAST of Cla006084 vs. NCBI nr
Match: gi|734320008|gb|KHN03665.1| (hypothetical protein glysoja_035408 [Glycine soja])

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 61/75 (81.33%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 24  QLRPPFTGASVAGSPVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLC 83
           QLR PFT ASV GSPVI S TSL FRH AGVSPHTWSYDFAETCVFGKQSP P H + LC
Sbjct: 40  QLRSPFTEASVIGSPVIWSLTSLTFRHLAGVSPHTWSYDFAETCVFGKQSPEPSHNDLLC 99

Query: 84  EEAPLLPKLRGYFAD 99
           EEAPLL KLRGYFA+
Sbjct: 100 EEAPLLSKLRGYFAE 114

[Close]

BLAST of Cla006084 vs. NCBI nr
Match: gi|297180508|gb|ADI16721.1| (hypothetical protein [uncultured Verrucomicrobiales bacterium HF0010_05E02])

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 1


Query: 20  RSFCQLRPPFTGASVAGS--PVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPG 79
           + F  LR     A + G   P + SP +L F HW+ V+P+T +Y  AE+CVF KQS G  
Sbjct: 19  KEFRYLRTVIVTADIHGGLDPKL-SPQALTFPHWSQVTPYTSTYVLAESCVFAKQSVGLF 78

Query: 80  HCNPLCEEAPLLPKLRGYFADMDFTKTYHTKLELMETTTPLPIRVGNP 126
           HC     +APLLPKLRG FA+    +   T+L ++ + T + +R G P
Sbjct: 79  HCGLARSQAPLLPKLRGNFAEF-LKEVSLTRLRILISDTCVGLRYGRP 124

[Close]

BLAST of Cla006084 vs. NCBI nr
Match: gi|1021149513|gb|ANA08048.1| (hypothetical protein 5G4_019 [uncultured bacterium 5G4])

HSP 1 Score: 72.8 bits (177), Expect = 6.3e-10
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 41  RSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC--------NPLCEEAPLLPKL 99
           R P  L F+HWAGVSP+T  Y  AET VFGKQSPGP  C        +P   EA L+PKL
Sbjct: 41  REPLPLTFQHWAGVSPYTSPYGLAETYVFGKQSPGPALCGLSSLQTRSPSQAEALLIPKL 100

The following BLAST results are available for this feature:

BLAST of Cla006084 vs. TrEMBL


Match Name	E-value	Identity	Description
S8DAJ4_9LAMI	2.1e-36	95.95	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00248 PE=4 SV=1	[more]
A0A166GEI3_DAUCA	5.1e-27	94.83	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001521 PE=4 SV=1	[more]
A0A0B2P353_GLYSO	7.4e-26	81.33	Uncharacterized protein OS=Glycine soja GN=glysoja_035408 PE=4 SV=1	[more]
A0A061S5B2_9CHLO	1.2e-12	89.47	Cell wall-associated hydrolase OS=Tetraselmis sp. GSL018 GN=TSPGSL018_10404 PE=4...	[more]
E0XQN0_9BACT	8.8e-11	40.74	Putative uncharacterized protein OS=uncultured Verrucomicrobiales bacterium HF00...	[more]

BLAST of Cla006084 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|527209922\|gb\|EPS74531.1\|	3.0e-36	95.95	hypothetical protein M569_00248, partial [Genlisea aurea]	[more]
gi\|1021051087\|gb\|KZN08865.1\|	7.4e-27	94.83	hypothetical protein DCAR_001521 [Daucus carota subsp. sativus]	[more]
gi\|734320008\|gb\|KHN03665.1\|	1.1e-25	81.33	hypothetical protein glysoja_035408 [Glycine soja]	[more]
gi\|297180508\|gb\|ADI16721.1\|	1.3e-10	40.74	hypothetical protein [uncultured Verrucomicrobiales bacterium HF0010_05E02]	[more]
gi\|1021149513\|gb\|ANA08048.1\|	6.3e-10	56.06	hypothetical protein 5G4_019 [uncultured bacterium 5G4]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006084	Cla006084.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006084	ClCG04G002950	Watermelon (Charleston Gray)	wcgwmB257

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006084	Watermelon (97103) v2	wmwmbB293
Cla006084	Cucumber (Gy14) v1	cgywmB325
Cla006084	Cucurbita maxima (Rimu)	cmawmB834
Cla006084	Cucurbita moschata (Rifu)	cmowmB822
Cla006084	Cucumber (Chinese Long) v2	cuwmB336
Cla006084	Cucurbita pepo (Zucchini)	cpewmB497
Cla006084	Bottle gourd (USVL1VR-Ls)	lsiwmB149
Cla006084	Cucumber (Gy14) v2	cgybwmB312
Cla006084	Silver-seed gourd	carwmB0471