Cla006084 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006084
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Conserved domain protein (Fragment) (AHRD V1 -- E2ZEK6_9FIRM)
Location	Chr4 : 12795081 .. 12795640 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCTGACATGAGTGAGATGATGGTTGGCATACAGACAATGACCAACTTACTTAGGTCTTTCTGTCAAGTATGTTCAGTTAATATGTATGTTTCGCTTTATTTTCGTAATTGTTGTTTTCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCCTGGCCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGATATGGATTTTACCAAGACATACCACACGAAGCTAGAGTTGATGGAGACCACCACCCCACTCCCCATTAGGGTTGGCAACCCAGGGGGGGTCCTTGTCCCCGCCCTCGTGGGGGGAACTGACCCACGTGCCACCCCTGTCCCCGCCATTACAGTGGGTAAACTGAGTAAACTGTCATTACAAAATGTACACATGTAA

mRNA sequence

ATGAGGTCTGACATGAGTGAGATGATGGTTGGCATACAGACAATGACCAACTTACTTAGGTCTTTCTGTCAATTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCCTGGCCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGATATGGATTTTACCAAGACATACCACACGAAGCTAGAGTTGATGGAGACCACCACCCCACTCCCCATTAGGGTTGGCAACCCAGGGGGGGTCCTTGTCCCCGCCCTCGTGGGGGGAACTGACCCACGTGCCACCCCTGTCCCCGCCATTACAGTGGGTAAACTGAGTAAACTGTCATTACAAAATGTACACATGTAA

Coding sequence (CDS)

ATGAGGTCTGACATGAGTGAGATGATGGTTGGCATACAGACAATGACCAACTTACTTAGGTCTTTCTGTCAATTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCCTGGCCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGATATGGATTTTACCAAGACATACCACACGAAGCTAGAGTTGATGGAGACCACCACCCCACTCCCCATTAGGGTTGGCAACCCAGGGGGGGTCCTTGTCCCCGCCCTCGTGGGGGGAACTGACCCACGTGCCACCCCTGTCCCCGCCATTACAGTGGGTAAACTGAGTAAACTGTCATTACAAAATGTACACATGTAA

Protein sequence

MRSDMSEMMVGIQTMTNLLRSFCQLRPPFTGASVAGSPVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLCEEAPLLPKLRGYFADMDFTKTYHTKLELMETTTPLPIRVGNPGGVLVPALVGGTDPRATPVPAITVGKLSKLSLQNVHM

Homology

[Close]

BLAST of Cla006084 vs. TrEMBL
Match: S8DAJ4_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00248 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-36
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 1


Query: 25 LRPPFTGASVAGSPVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLCE 84
          LRPPFTGASVAGSPVIRSPTSL FRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC+PLCE
Sbjct: 1  LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60

Query: 85 EAPLLPKLRGYFAD 99
          EAPLLPKLRGYFA+
Sbjct: 61 EAPLLPKLRGYFAE 74

[Close]

BLAST of Cla006084 vs. TrEMBL
Match: A0A166GEI3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001521 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.1e-27
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 41  RSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLCEEAPLLPKLRGYFAD 99
           RSPTSL FRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC+PLCEEAPLLPKLRGYFA+
Sbjct: 199 RSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCEEAPLLPKLRGYFAE 256

[Close]

BLAST of Cla006084 vs. TrEMBL
Match: A0A0B2P353_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_035408 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.4e-26
Identity = 61/75 (81.33%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 24  QLRPPFTGASVAGSPVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLC 83
           QLR PFT ASV GSPVI S TSL FRH AGVSPHTWSYDFAETCVFGKQSP P H + LC
Sbjct: 40  QLRSPFTEASVIGSPVIWSLTSLTFRHLAGVSPHTWSYDFAETCVFGKQSPEPSHNDLLC 99

Query: 84  EEAPLLPKLRGYFAD 99
           EEAPLL KLRGYFA+
Sbjct: 100 EEAPLLSKLRGYFAE 114

[Close]

BLAST of Cla006084 vs. TrEMBL
Match: A0A061S5B2_9CHLO (Cell wall-associated hydrolase OS=Tetraselmis sp. GSL018 GN=TSPGSL018_10404 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 42 SPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC 80
          SPTS  FRHWAGVSPHT SYD AETCVFGKQSPGPGHC
Sbjct: 54 SPTSFTFRHWAGVSPHTLSYDLAETCVFGKQSPGPGHC 91

[Close]

BLAST of Cla006084 vs. TrEMBL
Match: E0XQN0_9BACT (Putative uncharacterized protein OS=uncultured Verrucomicrobiales bacterium HF0010_05E02 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-11
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 1


Query: 20  RSFCQLRPPFTGASVAGS--PVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPG 79
           + F  LR     A + G   P + SP +L F HW+ V+P+T +Y  AE+CVF KQS G  
Sbjct: 19  KEFRYLRTVIVTADIHGGLDPKL-SPQALTFPHWSQVTPYTSTYVLAESCVFAKQSVGLF 78

Query: 80  HCNPLCEEAPLLPKLRGYFADMDFTKTYHTKLELMETTTPLPIRVGNP 126
           HC     +APLLPKLRG FA+    +   T+L ++ + T + +R G P
Sbjct: 79  HCGLARSQAPLLPKLRGNFAEF-LKEVSLTRLRILISDTCVGLRYGRP 124

[Close]

BLAST of Cla006084 vs. NCBI nr
Match: gi|527209922|gb|EPS74531.1| (hypothetical protein M569_00248, partial [Genlisea aurea])

HSP 1 Score: 160.2 bits (404), Expect = 3.0e-36
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 1


Query: 25 LRPPFTGASVAGSPVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLCE 84
          LRPPFTGASVAGSPVIRSPTSL FRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC+PLCE
Sbjct: 1  LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60

Query: 85 EAPLLPKLRGYFAD 99
          EAPLLPKLRGYFA+
Sbjct: 61 EAPLLPKLRGYFAE 74

[Close]

BLAST of Cla006084 vs. NCBI nr
Match: gi|1021051087|gb|KZN08865.1| (hypothetical protein DCAR_001521 [Daucus carota subsp. sativus])

HSP 1 Score: 129.0 bits (323), Expect = 7.4e-27
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 41  RSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLCEEAPLLPKLRGYFAD 99
           RSPTSL FRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC+PLCEEAPLLPKLRGYFA+
Sbjct: 199 RSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCEEAPLLPKLRGYFAE 256

[Close]

BLAST of Cla006084 vs. NCBI nr
Match: gi|734320008|gb|KHN03665.1| (hypothetical protein glysoja_035408 [Glycine soja])

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 61/75 (81.33%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 24  QLRPPFTGASVAGSPVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCNPLC 83
           QLR PFT ASV GSPVI S TSL FRH AGVSPHTWSYDFAETCVFGKQSP P H + LC
Sbjct: 40  QLRSPFTEASVIGSPVIWSLTSLTFRHLAGVSPHTWSYDFAETCVFGKQSPEPSHNDLLC 99

Query: 84  EEAPLLPKLRGYFAD 99
           EEAPLL KLRGYFA+
Sbjct: 100 EEAPLLSKLRGYFAE 114

[Close]

BLAST of Cla006084 vs. NCBI nr
Match: gi|297180508|gb|ADI16721.1| (hypothetical protein [uncultured Verrucomicrobiales bacterium HF0010_05E02])

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 1


Query: 20  RSFCQLRPPFTGASVAGS--PVIRSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPG 79
           + F  LR     A + G   P + SP +L F HW+ V+P+T +Y  AE+CVF KQS G  
Sbjct: 19  KEFRYLRTVIVTADIHGGLDPKL-SPQALTFPHWSQVTPYTSTYVLAESCVFAKQSVGLF 78

Query: 80  HCNPLCEEAPLLPKLRGYFADMDFTKTYHTKLELMETTTPLPIRVGNP 126
           HC     +APLLPKLRG FA+    +   T+L ++ + T + +R G P
Sbjct: 79  HCGLARSQAPLLPKLRGNFAEF-LKEVSLTRLRILISDTCVGLRYGRP 124

[Close]

BLAST of Cla006084 vs. NCBI nr
Match: gi|1021149513|gb|ANA08048.1| (hypothetical protein 5G4_019 [uncultured bacterium 5G4])

HSP 1 Score: 72.8 bits (177), Expect = 6.3e-10
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 41  RSPTSLAFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC--------NPLCEEAPLLPKL 99
           R P  L F+HWAGVSP+T  Y  AET VFGKQSPGP  C        +P   EA L+PKL
Sbjct: 41  REPLPLTFQHWAGVSPYTSPYGLAETYVFGKQSPGPALCGLSSLQTRSPSQAEALLIPKL 100

The following BLAST results are available for this feature:

BLAST of Cla006084 vs. TrEMBL


Match Name	E-value	Identity	Description
S8DAJ4_9LAMI	2.1e-36	95.95	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00248 PE=4 SV=1	[more]
A0A166GEI3_DAUCA	5.1e-27	94.83	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001521 PE=4 SV=1	[more]
A0A0B2P353_GLYSO	7.4e-26	81.33	Uncharacterized protein OS=Glycine soja GN=glysoja_035408 PE=4 SV=1	[more]
A0A061S5B2_9CHLO	1.2e-12	89.47	Cell wall-associated hydrolase OS=Tetraselmis sp. GSL018 GN=TSPGSL018_10404 PE=4...	[more]
E0XQN0_9BACT	8.8e-11	40.74	Putative uncharacterized protein OS=uncultured Verrucomicrobiales bacterium HF00...	[more]

BLAST of Cla006084 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|527209922\|gb\|EPS74531.1\|	3.0e-36	95.95	hypothetical protein M569_00248, partial [Genlisea aurea]	[more]
gi\|1021051087\|gb\|KZN08865.1\|	7.4e-27	94.83	hypothetical protein DCAR_001521 [Daucus carota subsp. sativus]	[more]
gi\|734320008\|gb\|KHN03665.1\|	1.1e-25	81.33	hypothetical protein glysoja_035408 [Glycine soja]	[more]
gi\|297180508\|gb\|ADI16721.1\|	1.3e-10	40.74	hypothetical protein [uncultured Verrucomicrobiales bacterium HF0010_05E02]	[more]
gi\|1021149513\|gb\|ANA08048.1\|	6.3e-10	56.06	hypothetical protein 5G4_019 [uncultured bacterium 5G4]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006084	Cla006084.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006084	ClCG04G002950	Watermelon (Charleston Gray)	wcgwmB257

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006084	Cucurbita pepo (Zucchini)	cpewmB497
Cla006084	Bottle gourd (USVL1VR-Ls)	lsiwmB149
Cla006084	Cucumber (Gy14) v2	cgybwmB312
Cla006084	Silver-seed gourd	carwmB0471
Cla006084	Watermelon (97103) v2	wmwmbB293
Cla006084	Cucumber (Gy14) v1	cgywmB325
Cla006084	Cucurbita maxima (Rimu)	cmawmB834
Cla006084	Cucurbita moschata (Rifu)	cmowmB822
Cla006084	Cucumber (Chinese Long) v2	cuwmB336