Cla006083 (gene) Watermelon (97103) v1

Overview
NameCla006083
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionVHS domain-containing protein (AHRD V1 **-- D7MPR1_ARALL)
LocationChr4 : 12775724 .. 12777230 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCTCGTGTTGTCTTCTCGGTATGGTTCCATCTTTTTGCCTGTTTCTTCCACACTGCACCAGTAACATATTCCATTCAATGAATGGTTATTGCTTTATGAAACAATAACGTACTATGATGAAATAAATGAAAGGTCGACAGGGAGCTAAAAATATTGTTGATATTGTAGTTGACAACTTTTGTAAATGAAAAACTGTGCAATAATGTTTTTGTTTTTGGAACAACTTTGCGTATAACTGAAAAAATCTCTTATATTACTCTCCCTATTGTAGATAGCTTTAAGGATGCTGGATTTGACACATCTCAAGATATCCTATAAATTAGTACATTCTTTTGAAAAAAAGTTGTTTAATTTATAAGAAATAAGCTAAATATGTGTTACTACCTTTTTCCAATTTCCTGACCTAAGAACTCTCTGCTATGTGTCTGTTGTTTTGAATTTCCCTTTTTCTTTTTGTATATTGTGGTTGTTACTCTTGTTAGCCTGCGACAGATATCAACTATTAGTATTGCATGAGTAGCAATGGTATATTTTTTCATTTCTCTCAATAAAGTTGATTTTGTTTTTTATAAATAATAGTAATATGTGAATTTTTCTCTCCAAATTTCTTGTTTAATTGGAGGAATATTATTATTTTTTATTATTTTTGCCTATTCTTAGTTGTAATGCATGGCTCAGTTTGGATTGTTTTTTTTTTTCTGGCTCTACAATAGTCTCTCTTCTCTTCTCTTCATTTTATTAATGAAAAGTTATGTCTCATTTAATAAAAAAAAATAATAATAATAATCTACTTAATTGGCGTACTTGCAAACTTCAGTATCTTGTAATTCTATTGGTCTATCATTCAGATTTCCGGTTGCTTTCACTGTGTTTCAGGGACGAGAAGATTGTCTGTCGTGCCATTGAATTGAATGAGAAGCTCCAAAAGGTCCTTGCAAGACATGATGCCCTCCTCTCGGGTCAGTTTATGTCGGCTCAAAATCAGTTCAATGGGGAAGAAGCCGGTATGTCTAGGTTGCCTGCCAATCATTATAACCAAGACGAAGGAGAAGATGAAGAAGAGGCCGAACAACTTTTCCGAAGGTAATACATAAAATCCAATGTTGAGTCCAGTATGGCGCATGCAAGTATAAGCAAACTAAGTAGTAAGTGATATGGACAATGACAGGCTGCGAAAAGGAAAAGCTTGTGTAAGGCCTGAAGATGAAGAAGATTCTTCAGAGGAGCGACCGTCGTTGGGTTTGCTAGGATTGTCAATTCCAGTCGAACGAGCTAACCGTCCGATCATTCGACCTATCACTGAGAAGCTGTCAACAATATCGGTTATGCAGCATGGCGAGGGTGTTTCAATACCACCACCACCTGTAAAACATGCAGAAAGGGAGAAGTTCTTTAAGGATAAGAAGATGGATGTTGGAGTTGGGCATATGAGAGGCCTTTCTTTACACAGTCGTAATGCTAGCAGCTCTCGCAGTGGGAGCATAGATTTCAATGAGTCATGA

mRNA sequence

ATGCATCTCGTGTTGTCTTCTCGGGACGAGAAGATTGTCTGTCGTGCCATTGAATTGAATGAGAAGCTCCAAAAGGTCCTTGCAAGACATGATGCCCTCCTCTCGGGTCAGTTTATGTCGGCTCAAAATCAGTTCAATGGGGAAGAAGCCGGTATGTCTAGGTTGCCTGCCAATCATTATAACCAAGACGAAGGAGAAGATGAAGAAGAGGCCGAACAACTTTTCCGAAGGCTGCGAAAAGGAAAAGCTTGTGTAAGGCCTGAAGATGAAGAAGATTCTTCAGAGGAGCGACCGTCGTTGGGTTTGCTAGGATTGTCAATTCCAGTCGAACGAGCTAACCGTCCGATCATTCGACCTATCACTGAGAAGCTGTCAACAATATCGGTTATGCAGCATGGCGAGGGTGTTTCAATACCACCACCACCTGTAAAACATGCAGAAAGGGAGAAGTTCTTTAAGGATAAGAAGATGGATGTTGGAGTTGGGCATATGAGAGGCCTTTCTTTACACAGTCGTAATGCTAGCAGCTCTCGCAGTGGGAGCATAGATTTCAATGAGTCATGA

Coding sequence (CDS)

ATGCATCTCGTGTTGTCTTCTCGGGACGAGAAGATTGTCTGTCGTGCCATTGAATTGAATGAGAAGCTCCAAAAGGTCCTTGCAAGACATGATGCCCTCCTCTCGGGTCAGTTTATGTCGGCTCAAAATCAGTTCAATGGGGAAGAAGCCGGTATGTCTAGGTTGCCTGCCAATCATTATAACCAAGACGAAGGAGAAGATGAAGAAGAGGCCGAACAACTTTTCCGAAGGCTGCGAAAAGGAAAAGCTTGTGTAAGGCCTGAAGATGAAGAAGATTCTTCAGAGGAGCGACCGTCGTTGGGTTTGCTAGGATTGTCAATTCCAGTCGAACGAGCTAACCGTCCGATCATTCGACCTATCACTGAGAAGCTGTCAACAATATCGGTTATGCAGCATGGCGAGGGTGTTTCAATACCACCACCACCTGTAAAACATGCAGAAAGGGAGAAGTTCTTTAAGGATAAGAAGATGGATGTTGGAGTTGGGCATATGAGAGGCCTTTCTTTACACAGTCGTAATGCTAGCAGCTCTCGCAGTGGGAGCATAGATTTCAATGAGTCATGA

Protein sequence

MHLVLSSRDEKIVCRAIELNEKLQKVLARHDALLSGQFMSAQNQFNGEEAGMSRLPANHYNQDEGEDEEEAEQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPITEKLSTISVMQHGEGVSIPPPPVKHAEREKFFKDKKMDVGVGHMRGLSLHSRNASSSRSGSIDFNES
Homology
[Close]
BLAST of Cla006083 vs. TrEMBL
Match: A0A0A0KXZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338940 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 2.8e-93
Identity = 174/187 (93.05%), Postives = 179/187 (95.72%), Query Frame = 1 

Query: 1   MHLVLSSRDEKIVCRAIELNEKLQKVLARHDALLSGQFMSAQNQFNGEEAGMSRLPANHY 60
           MHLVLSSRDEKIVC AIELNEKLQKVLARHDALLSGQFMS QNQFNGEE GMSRLPANHY
Sbjct: 1   MHLVLSSRDEKIVCGAIELNEKLQKVLARHDALLSGQFMSTQNQFNGEEVGMSRLPANHY 60

Query: 61  NQDEGEDEEEAEQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI 120
           N DEGEDEEEA+QLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI
Sbjct: 61  NHDEGEDEEEADQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI 120

Query: 121 TEKLSTISVMQHGEGVSIPPPPVKHAEREKFFKDKKMDVGVGHMRGLSLHSRNASSSRSG 180
            EK+ST   +QHG+GVSIPPPPVKHAEREKFFKDKK+DVGVGHMRGLSLHSRNASSSRSG
Sbjct: 121 DEKVSTTLEIQHGQGVSIPPPPVKHAEREKFFKDKKIDVGVGHMRGLSLHSRNASSSRSG 180

Query: 181 SIDFNES 188
           SIDFNES
Sbjct: 181 SIDFNES 187

[Close]
BLAST of Cla006083 vs. TrEMBL
Match: A0A067KK37_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09342 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.0e-51
Identity = 114/188 (60.64%), Postives = 139/188 (73.94%), Query Frame = 1 

Query: 1   MHLVLSSRDEKIVCRAIELNEKLQKVLARHDALLSGQFMSAQNQFNGEEAGMSRLPANHY 60
           MHLV++SRDEK+V RAIELNE+L KVLAR+DA +SG+ M +      ++   +   ANH+
Sbjct: 231 MHLVMTSRDEKVVSRAIELNEQLHKVLARYDAFISGRSMPSDRSAVSDKTTST---ANHF 290

Query: 61  NQDEGEDEEEAEQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI 120
             DE E+EEEAEQLFRRLRKGKAC RP DE +S EER S+GLLG SI  ER NRP+IRPI
Sbjct: 291 IHDEEEEEEEAEQLFRRLRKGKACARPVDEVNS-EERLSMGLLGSSIAGERLNRPLIRPI 350

Query: 121 TEKLSTISVMQHGEGVSIPPPPVKHAEREKFFKDKKMDVG--VGHMRGLSLHSRNASSSR 180
                    + +   V+IPPPP KH ERE+FF++KK+D     GHMRGLSLHSRNASSSR
Sbjct: 351 ISSDQPHEPLVNPPPVAIPPPPAKHVERERFFQEKKVDGSGVTGHMRGLSLHSRNASSSR 410

Query: 181 SGSIDFNE 187
           SGSIDF++
Sbjct: 411 SGSIDFSD 414

[Close]
BLAST of Cla006083 vs. TrEMBL
Match: M5WJL6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006676mg PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.6e-51
Identity = 119/188 (63.30%), Postives = 137/188 (72.87%), Query Frame = 1 

Query: 1   MHLVLSSRDEKIVCRAIELNEKLQKVLARHDALLSGQFMSAQNQFNGEEAGMSRLPANHY 60
           MHLV++SRDEK V RAIELNE+LQKVLARHDALLS +  S                 NH 
Sbjct: 230 MHLVMTSRDEKAVSRAIELNEQLQKVLARHDALLSCKPTST---------------VNHL 289

Query: 61  NQDEGEDEEEAEQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI 120
           NQD+ E+EEEAEQLFRRLRKGKACVRPEDEE S+ ERP LGLLG S P ER NRP+IRP+
Sbjct: 290 NQDQAEEEEEAEQLFRRLRKGKACVRPEDEEQSA-ERPHLGLLGSSQPGERLNRPLIRPL 349

Query: 121 TEKLSTISVMQHGEGVSIPPPPVKHAEREKFFKDKKMDVG--VGHMRGLSLHSRNASSSR 180
             +    S   H   V+IPPPP KH EREK+F++ KMD     GH+RGLSLHSRNASSSR
Sbjct: 350 CLEPPQES-NGHLPPVAIPPPPAKHIEREKYFQETKMDGSGLAGHVRGLSLHSRNASSSR 400

Query: 181 SGSIDFNE 187
           SGS+DF++
Sbjct: 410 SGSMDFSD 400

[Close]
BLAST of Cla006083 vs. TrEMBL
Match: U5GFF3_POPTR (VHS domain-containing family protein OS=Populus trichocarpa GN=POPTR_0004s14580g PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.0e-50
Identity = 114/189 (60.32%), Postives = 138/189 (73.02%), Query Frame = 1 

Query: 1   MHLVLSSRDEKIVCRAIELNEKLQKVLARHDALLSGQ-FMSAQNQFNGEEAGMSRLPANH 60
           MHLV++SRDEK+V RAIELNE+LQKVLARHDA+LSG+  +S +N F+      +    NH
Sbjct: 236 MHLVMTSRDEKLVSRAIELNEQLQKVLARHDAILSGRSTVSDRNTFSDR----TTTAPNH 295

Query: 61  YNQDEGEDEEEAEQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRP 120
           +N +E E+EEE EQLFRRLRKGKAC RPED E +SEERP LG++G +IP ER NRP+IRP
Sbjct: 296 FNHEESEEEEEPEQLFRRLRKGKACARPED-EGNSEERPPLGIIGSTIPGERLNRPLIRP 355

Query: 121 ITEKLSTISVMQHGEGVSIPPPPVKHAEREKFFKDKKMDVG--VGHMRGLSLHSRNASSS 180
           +  +        H   V IPPPP KH EREKFF++ K D      HMRGLSLH  NASSS
Sbjct: 356 LPSE-QPQEPSAHPAPVVIPPPPAKHIEREKFFQETKADGSDVDSHMRGLSLHCHNASSS 415

Query: 181 RSGSIDFNE 187
           R+GSIDF+E
Sbjct: 416 RAGSIDFSE 418

[Close]
BLAST of Cla006083 vs. TrEMBL
Match: A0A067F6C8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0143901mg PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 8.5e-50
Identity = 111/195 (56.92%), Postives = 135/195 (69.23%), Query Frame = 1 

Query: 1   MHLVLSSRDEKIVCRAIELNEKLQKVLARHDALLSGQFMSAQNQFNGEEAGMS------- 60
           MHLV++SRDEK+V +AI+LNE+LQ VLARHD LLS +  S  N  N ++  +S       
Sbjct: 233 MHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLLSERSTSTANHVNHQDGHLSTRSTTTA 292

Query: 61  RLPANHYNQDEGEDEEEAEQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERAN 120
              ANH +  E E+EEEAEQL RR+RKGK C RPEDEE   E  P LG+LG SIP  R N
Sbjct: 293 NHSANHADHAEEEEEEEAEQLSRRMRKGKGCARPEDEEHLPERHP-LGILGSSIPAARLN 352

Query: 121 RPIIRPITEKLSTISVMQHGEGVSIPPPPVKHAEREKFFKDKKMD--VGVGHMRGLSLHS 180
           RP+IRP+  +        H + V+IPPPP KH EREKFF++KK+D     GHMRGLSLHS
Sbjct: 353 RPLIRPVQAE-PPHETNAHPQPVTIPPPPAKHVEREKFFQEKKVDASAAAGHMRGLSLHS 412

Query: 181 RNASSSRSGSIDFNE 187
           RNASSSRSGS DF++
Sbjct: 413 RNASSSRSGSTDFSD 425

[Close]
BLAST of Cla006083 vs. NCBI nr
Match: gi|449449813|ref|XP_004142659.1| (PREDICTED: target of Myb protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 4.0e-93
Identity = 174/187 (93.05%), Postives = 179/187 (95.72%), Query Frame = 1 

Query: 1   MHLVLSSRDEKIVCRAIELNEKLQKVLARHDALLSGQFMSAQNQFNGEEAGMSRLPANHY 60
           MHLVLSSRDEKIVC AIELNEKLQKVLARHDALLSGQFMS QNQFNGEE GMSRLPANHY
Sbjct: 230 MHLVLSSRDEKIVCGAIELNEKLQKVLARHDALLSGQFMSTQNQFNGEEVGMSRLPANHY 289

Query: 61  NQDEGEDEEEAEQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI 120
           N DEGEDEEEA+QLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI
Sbjct: 290 NHDEGEDEEEADQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI 349

Query: 121 TEKLSTISVMQHGEGVSIPPPPVKHAEREKFFKDKKMDVGVGHMRGLSLHSRNASSSRSG 180
            EK+ST   +QHG+GVSIPPPPVKHAEREKFFKDKK+DVGVGHMRGLSLHSRNASSSRSG
Sbjct: 350 DEKVSTTLEIQHGQGVSIPPPPVKHAEREKFFKDKKIDVGVGHMRGLSLHSRNASSSRSG 409

Query: 181 SIDFNES 188
           SIDFNES
Sbjct: 410 SIDFNES 416

[Close]
BLAST of Cla006083 vs. NCBI nr
Match: gi|778694136|ref|XP_011653749.1| (PREDICTED: target of Myb protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 4.0e-93
Identity = 174/187 (93.05%), Postives = 179/187 (95.72%), Query Frame = 1 

Query: 1   MHLVLSSRDEKIVCRAIELNEKLQKVLARHDALLSGQFMSAQNQFNGEEAGMSRLPANHY 60
           MHLVLSSRDEKIVC AIELNEKLQKVLARHDALLSGQFMS QNQFNGEE GMSRLPANHY
Sbjct: 213 MHLVLSSRDEKIVCGAIELNEKLQKVLARHDALLSGQFMSTQNQFNGEEVGMSRLPANHY 272

Query: 61  NQDEGEDEEEAEQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI 120
           N DEGEDEEEA+QLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI
Sbjct: 273 NHDEGEDEEEADQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI 332

Query: 121 TEKLSTISVMQHGEGVSIPPPPVKHAEREKFFKDKKMDVGVGHMRGLSLHSRNASSSRSG 180
            EK+ST   +QHG+GVSIPPPPVKHAEREKFFKDKK+DVGVGHMRGLSLHSRNASSSRSG
Sbjct: 333 DEKVSTTLEIQHGQGVSIPPPPVKHAEREKFFKDKKIDVGVGHMRGLSLHSRNASSSRSG 392

Query: 181 SIDFNES 188
           SIDFNES
Sbjct: 393 SIDFNES 399

[Close]
BLAST of Cla006083 vs. NCBI nr
Match: gi|700199332|gb|KGN54490.1| (hypothetical protein Csa_4G338940 [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 4.0e-93
Identity = 174/187 (93.05%), Postives = 179/187 (95.72%), Query Frame = 1 

Query: 1   MHLVLSSRDEKIVCRAIELNEKLQKVLARHDALLSGQFMSAQNQFNGEEAGMSRLPANHY 60
           MHLVLSSRDEKIVC AIELNEKLQKVLARHDALLSGQFMS QNQFNGEE GMSRLPANHY
Sbjct: 1   MHLVLSSRDEKIVCGAIELNEKLQKVLARHDALLSGQFMSTQNQFNGEEVGMSRLPANHY 60

Query: 61  NQDEGEDEEEAEQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI 120
           N DEGEDEEEA+QLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI
Sbjct: 61  NHDEGEDEEEADQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI 120

Query: 121 TEKLSTISVMQHGEGVSIPPPPVKHAEREKFFKDKKMDVGVGHMRGLSLHSRNASSSRSG 180
            EK+ST   +QHG+GVSIPPPPVKHAEREKFFKDKK+DVGVGHMRGLSLHSRNASSSRSG
Sbjct: 121 DEKVSTTLEIQHGQGVSIPPPPVKHAEREKFFKDKKIDVGVGHMRGLSLHSRNASSSRSG 180

Query: 181 SIDFNES 188
           SIDFNES
Sbjct: 181 SIDFNES 187

[Close]
BLAST of Cla006083 vs. NCBI nr
Match: gi|659069348|ref|XP_008449359.1| (PREDICTED: LOW QUALITY PROTEIN: TOM1-like protein 1 [Cucumis melo])

HSP 1 Score: 343.2 bits (879), Expect = 2.9e-91
Identity = 171/187 (91.44%), Postives = 176/187 (94.12%), Query Frame = 1 

Query: 1   MHLVLSSRDEKIVCRAIELNEKLQKVLARHDALLSGQFMSAQNQFNGEEAGMSRLPANHY 60
           MHLVLSSRDEKIVC AIELNEKLQKVLARHDALLSGQFMS QNQFNGEE GMSRLPANHY
Sbjct: 230 MHLVLSSRDEKIVCGAIELNEKLQKVLARHDALLSGQFMSTQNQFNGEEVGMSRLPANHY 289

Query: 61  NQDEGEDEEEAEQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI 120
           N DEGEDEEEAEQL+RRLRKGKACV PEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI
Sbjct: 290 NHDEGEDEEEAEQLYRRLRKGKACVMPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI 349

Query: 121 TEKLSTISVMQHGEGVSIPPPPVKHAEREKFFKDKKMDVGVGHMRGLSLHSRNASSSRSG 180
            EK+ST   +QHG+GV IPPPPVKHAEREKFFK+KK DVGVGHMRGLSLHSRNASSSRSG
Sbjct: 350 DEKVSTTLEIQHGQGVGIPPPPVKHAEREKFFKEKKXDVGVGHMRGLSLHSRNASSSRSG 409

Query: 181 SIDFNES 188
           SIDFNES
Sbjct: 410 SIDFNES 416

[Close]
BLAST of Cla006083 vs. NCBI nr
Match: gi|802607792|ref|XP_012073991.1| (PREDICTED: TOM1-like protein 2 [Jatropha curcas])

HSP 1 Score: 210.3 bits (534), Expect = 2.9e-51
Identity = 114/188 (60.64%), Postives = 139/188 (73.94%), Query Frame = 1 

Query: 1   MHLVLSSRDEKIVCRAIELNEKLQKVLARHDALLSGQFMSAQNQFNGEEAGMSRLPANHY 60
           MHLV++SRDEK+V RAIELNE+L KVLAR+DA +SG+ M +      ++   +   ANH+
Sbjct: 231 MHLVMTSRDEKVVSRAIELNEQLHKVLARYDAFISGRSMPSDRSAVSDKTTST---ANHF 290

Query: 61  NQDEGEDEEEAEQLFRRLRKGKACVRPEDEEDSSEERPSLGLLGLSIPVERANRPIIRPI 120
             DE E+EEEAEQLFRRLRKGKAC RP DE +S EER S+GLLG SI  ER NRP+IRPI
Sbjct: 291 IHDEEEEEEEAEQLFRRLRKGKACARPVDEVNS-EERLSMGLLGSSIAGERLNRPLIRPI 350

Query: 121 TEKLSTISVMQHGEGVSIPPPPVKHAEREKFFKDKKMDVG--VGHMRGLSLHSRNASSSR 180
                    + +   V+IPPPP KH ERE+FF++KK+D     GHMRGLSLHSRNASSSR
Sbjct: 351 ISSDQPHEPLVNPPPVAIPPPPAKHVERERFFQEKKVDGSGVTGHMRGLSLHSRNASSSR 410

Query: 181 SGSIDFNE 187
           SGSIDF++
Sbjct: 411 SGSIDFSD 414

The following BLAST results are available for this feature:
BLAST of Cla006083 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXZ2_CUCSA2.8e-9393.05Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338940 PE=4 SV=1[more]
A0A067KK37_JATCU2.0e-5160.64Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09342 PE=4 SV=1[more]
M5WJL6_PRUPE2.6e-5163.30Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006676mg PE=4 SV=1[more]
U5GFF3_POPTR1.0e-5060.32VHS domain-containing family protein OS=Populus trichocarpa GN=POPTR_0004s14580g... [more]
A0A067F6C8_CITSI8.5e-5056.92Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0143901mg PE=4 SV=1[more]
BLAST of Cla006083 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449449813|ref|XP_004142659.1|4.0e-9393.05PREDICTED: target of Myb protein 1 isoform X1 [Cucumis sativus][more]
gi|778694136|ref|XP_011653749.1|4.0e-9393.05PREDICTED: target of Myb protein 1 isoform X2 [Cucumis sativus][more]
gi|700199332|gb|KGN54490.1|4.0e-9393.05hypothetical protein Csa_4G338940 [Cucumis sativus][more]
gi|659069348|ref|XP_008449359.1|2.9e-9191.44PREDICTED: LOW QUALITY PROTEIN: TOM1-like protein 1 [Cucumis melo][more]
gi|802607792|ref|XP_012073991.1|2.9e-5160.64PREDICTED: TOM1-like protein 2 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006886 intracellular protein transport
cellular_component GO:0044464 cell part
cellular_component GO:0005622 intracellular
cellular_component GO:0005886 plasma membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU15070watermelon EST collection version 2.0transcribed_cluster
WMU15456watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU59468watermelon EST collection version 2.0transcribed_cluster
WMU79079watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006083Cla006083.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU79079WMU79079transcribed_cluster
WMU15456WMU15456transcribed_cluster
WMU15070WMU15070transcribed_cluster
WMU59468WMU59468transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13856VHS DOMAIN CONTAINING PROTEIN FAMILYcoord: 1..148
score: 5.3
NoneNo IPR availablePANTHERPTHR13856:SF81ENTH/VHS/GAT FAMILY PROTEINcoord: 1..148
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006083Cla97C04G070300Watermelon (97103) v2wmwmbB293
Cla006083ClCG04G002940Watermelon (Charleston Gray)wcgwmB257
Cla006083CmaCh07G013760Cucurbita maxima (Rimu)cmawmB834
Cla006083CmoCh07G014170Cucurbita moschata (Rifu)cmowmB822
Cla006083Lsi01G020100Bottle gourd (USVL1VR-Ls)lsiwmB149
Cla006083Cp4.1LG19g00050Cucurbita pepo (Zucchini)cpewmB497
Cla006083Carg21091Silver-seed gourdcarwmB0471
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006083Cucumber (Gy14) v2cgybwmB312
Cla006083Cucumber (Gy14) v1cgywmB325
Cla006083Cucumber (Chinese Long) v2cuwmB336