Cla006002 (gene) Watermelon (97103) v1

Overview
NameCla006002
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 2141142 .. 2141405 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATTTGCTTTCTTTTTTTCAATTTTGCTTCTTCTTATCAACACTCATAGGCTTGAAGGTGGCAGAATTATGAAAGAAGGGAACCCAAAATGGTCAACGGTAGCGTTTCTCCAGTCATCGGAGAGGCCACCGGTTCCTCCCTCTCGAAAAAATGGTGGCACCAATATTCCGACACCGGTCCGTCCTAGGGCTTTTGCGGGGAAATCCATGGCGGTGCCGTCGCTGCCAACGCAAGACTACTCAAACCATGTTTAA

mRNA sequence

ATGAAGATCCAATTTGCTTTCTTTTTTTCAATTTTGCTTCTTCTTATCAACACTCATAGGCTTGAAGGTGGCAGAATTATGAAAGAAGGGAACCCAAAATGGTCAACGGTAGCGTTTCTCCAGTCATCGGAGAGGCCACCGGTTCCTCCCTCTCGAAAAAATGGTGGCACCAATATTCCGACACCGGTCCGTCCTAGGGCTTTTGCGGGGAAATCCATGGCGGTGCCGTCGCTGCCAACGCAAGACTACTCAAACCATGTTTAA

Coding sequence (CDS)

ATGAAGATCCAATTTGCTTTCTTTTTTTCAATTTTGCTTCTTCTTATCAACACTCATAGGCTTGAAGGTGGCAGAATTATGAAAGAAGGGAACCCAAAATGGTCAACGGTAGCGTTTCTCCAGTCATCGGAGAGGCCACCGGTTCCTCCCTCTCGAAAAAATGGTGGCACCAATATTCCGACACCGGTCCGTCCTAGGGCTTTTGCGGGGAAATCCATGGCGGTGCCGTCGCTGCCAACGCAAGACTACTCAAACCATGTTTAA

Protein sequence

MKIQFAFFFSILLLLINTHRLEGGRIMKEGNPKWSTVAFLQSSERPPVPPSRKNGGTNIPTPVRPRAFAGKSMAVPSLPTQDYSNHV
Homology
[Close]
BLAST of Cla006002 vs. TrEMBL
Match: A0A0A0LCY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.6e-13
Identity = 43/76 (56.58%), Postives = 51/76 (67.11%), Query Frame = 1 

Query: 1  MKIQFAFFFSILLLLINTHRLEGGRIMKEGNPKWSTVAFL--QSSERPPVPPSRKNGGTN 60
          MKIQF+F  +IL+LL NTH L+  R +K+    WS    L  QS +R PVPPS KNG TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPTPVRPRAFAGKSMA 75
          IP PV  RAFAGK+ A
Sbjct: 61 IPVPVGQRAFAGKTSA 76

[Close]
BLAST of Cla006002 vs. NCBI nr
Match: gi|700202793|gb|KGN57926.1| (hypothetical protein Csa_3G393150 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 9.4e-13
Identity = 43/76 (56.58%), Postives = 51/76 (67.11%), Query Frame = 1 

Query: 1  MKIQFAFFFSILLLLINTHRLEGGRIMKEGNPKWSTVAFL--QSSERPPVPPSRKNGGTN 60
          MKIQF+F  +IL+LL NTH L+  R +K+    WS    L  QS +R PVPPS KNG TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPTPVRPRAFAGKSMA 75
          IP PV  RAFAGK+ A
Sbjct: 61 IPVPVGQRAFAGKTSA 76

The following BLAST results are available for this feature:
BLAST of Cla006002 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCY5_CUCSA6.6e-1356.58Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1[more]
BLAST of Cla006002 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202793|gb|KGN57926.1|9.4e-1356.58hypothetical protein Csa_3G393150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006002Cla006002.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006002Cucurbita pepo (Zucchini)cpewmB257
Cla006002Cucurbita pepo (Zucchini)cpewmB326
Cla006002Cucurbita pepo (Zucchini)cpewmB605
Cla006002Cucurbita pepo (Zucchini)cpewmB700
Cla006002Cucurbita pepo (Zucchini)cpewmB841
Cla006002Bottle gourd (USVL1VR-Ls)lsiwmB013
Cla006002Bottle gourd (USVL1VR-Ls)lsiwmB356
Cla006002Bottle gourd (USVL1VR-Ls)lsiwmB359
Cla006002Cucumber (Gy14) v2cgybwmB114
Cla006002Cucumber (Gy14) v2cgybwmB207
Cla006002Melon (DHL92) v3.6.1medwmB401
Cla006002Melon (DHL92) v3.6.1medwmB444
Cla006002Silver-seed gourdcarwmB0750
Cla006002Silver-seed gourdcarwmB0778
Cla006002Silver-seed gourdcarwmB0960
Cla006002Cucumber (Chinese Long) v3cucwmB130
Cla006002Cucumber (Chinese Long) v3cucwmB227
Cla006002Watermelon (97103) v2wmwmbB161
Cla006002Watermelon (97103) v2wmwmbB165
Cla006002Watermelon (97103) v2wmwmbB175
Cla006002Wax gourdwgowmB265
Cla006002Watermelon (97103) v1wmwmB099
Cla006002Watermelon (97103) v1wmwmB116
Cla006002Cucumber (Gy14) v1cgywmB475
Cla006002Cucurbita maxima (Rimu)cmawmB236
Cla006002Cucurbita maxima (Rimu)cmawmB491
Cla006002Cucurbita maxima (Rimu)cmawmB558
Cla006002Cucurbita maxima (Rimu)cmawmB866
Cla006002Cucurbita moschata (Rifu)cmowmB223
Cla006002Cucurbita moschata (Rifu)cmowmB339
Cla006002Cucurbita moschata (Rifu)cmowmB485
Cla006002Cucurbita moschata (Rifu)cmowmB551
Cla006002Cucurbita moschata (Rifu)cmowmB853
Cla006002Melon (DHL92) v3.5.1mewmB410
Cla006002Melon (DHL92) v3.5.1mewmB459
Cla006002Watermelon (Charleston Gray)wcgwmB324
Cla006002Watermelon (Charleston Gray)wcgwmB373
Cla006002Cucumber (Chinese Long) v2cuwmB116
Cla006002Cucumber (Chinese Long) v2cuwmB221