Cla006001 (gene) Watermelon (97103) v1

Overview
NameCla006001
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 2135106 .. 2135375 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCAAATTTGCTTTCTTGTTAGCCATTTTGCTTCTTCTTGCCAACACTCATCAGCTCCAAAGTTGTAGAACCATGAAAGAGGATCGACAAAAGTGGTCGACGGAGCTACTTCTTCGGCAGTCTCTGCAGAGGGCACCGGTCCCTCCCTCGGCCAAAAACGGTGGCACCAATATCCCGGTACCGGTCGGGCAAAGGGCCTTCGCCGGAAAATCTACAATTGATCATGTACCGGTTCCTTTTGGTGCGGCCTTGAACACAAACTAA

mRNA sequence

ATGAAGATCAAATTTGCTTTCTTGTTAGCCATTTTGCTTCTTCTTGCCAACACTCATCAGCTCCAAAGTTGTAGAACCATGAAAGAGGATCGACAAAAGTGGTCGACGGAGCTACTTCTTCGGCAGTCTCTGCAGAGGGCACCGGTCCCTCCCTCGGCCAAAAACGGTGGCACCAATATCCCGGTACCGGTCGGGCAAAGGGCCTTCGCCGGAAAATCTACAATTGATCATGTACCGGTTCCTTTTGGTGCGGCCTTGAACACAAACTAA

Coding sequence (CDS)

ATGAAGATCAAATTTGCTTTCTTGTTAGCCATTTTGCTTCTTCTTGCCAACACTCATCAGCTCCAAAGTTGTAGAACCATGAAAGAGGATCGACAAAAGTGGTCGACGGAGCTACTTCTTCGGCAGTCTCTGCAGAGGGCACCGGTCCCTCCCTCGGCCAAAAACGGTGGCACCAATATCCCGGTACCGGTCGGGCAAAGGGCCTTCGCCGGAAAATCTACAATTGATCATGTACCGGTTCCTTTTGGTGCGGCCTTGAACACAAACTAA

Protein sequence

MKIKFAFLLAILLLLANTHQLQSCRTMKEDRQKWSTELLLRQSLQRAPVPPSAKNGGTNIPVPVGQRAFAGKSTIDHVPVPFGAALNTN
Homology
[Close]
BLAST of Cla006001 vs. TrEMBL
Match: A0A0A0LCY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-24
Identity = 59/75 (78.67%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1  MKIKFAFLLAILLLLANTHQLQSCRTMKEDRQKWSTEL-LLRQSLQRAPVPPSAKNGGTN 60
          MKI+F+FLLAIL+LLANTH LQSCRT+K+D+Q WS +L LL+QSLQR PVPPSAKNG TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPVGQRAFAGKST 75
          IPVPVGQRAFAGK++
Sbjct: 61 IPVPVGQRAFAGKTS 75

[Close]
BLAST of Cla006001 vs. NCBI nr
Match: gi|700202793|gb|KGN57926.1| (hypothetical protein Csa_3G393150 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-24
Identity = 59/75 (78.67%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1  MKIKFAFLLAILLLLANTHQLQSCRTMKEDRQKWSTEL-LLRQSLQRAPVPPSAKNGGTN 60
          MKI+F+FLLAIL+LLANTH LQSCRT+K+D+Q WS +L LL+QSLQR PVPPSAKNG TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPVGQRAFAGKST 75
          IPVPVGQRAFAGK++
Sbjct: 61 IPVPVGQRAFAGKTS 75

The following BLAST results are available for this feature:
BLAST of Cla006001 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCY5_CUCSA1.0e-2478.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1[more]
BLAST of Cla006001 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202793|gb|KGN57926.1|1.4e-2478.67hypothetical protein Csa_3G393150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006001Cla006001.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006001ClCG07G000820Watermelon (Charleston Gray)wcgwmB373
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006001Wax gourdwgowmB265
Cla006001Watermelon (97103) v1wmwmB099
Cla006001Watermelon (97103) v1wmwmB116
Cla006001Cucumber (Gy14) v1cgywmB475
Cla006001Cucurbita maxima (Rimu)cmawmB236
Cla006001Cucurbita maxima (Rimu)cmawmB491
Cla006001Cucurbita maxima (Rimu)cmawmB558
Cla006001Cucurbita maxima (Rimu)cmawmB866
Cla006001Cucurbita moschata (Rifu)cmowmB223
Cla006001Cucurbita moschata (Rifu)cmowmB339
Cla006001Cucurbita moschata (Rifu)cmowmB485
Cla006001Cucurbita moschata (Rifu)cmowmB551
Cla006001Cucurbita moschata (Rifu)cmowmB853
Cla006001Melon (DHL92) v3.5.1mewmB410
Cla006001Melon (DHL92) v3.5.1mewmB459
Cla006001Watermelon (Charleston Gray)wcgwmB324
Cla006001Cucumber (Chinese Long) v2cuwmB116
Cla006001Cucumber (Chinese Long) v2cuwmB221
Cla006001Cucurbita pepo (Zucchini)cpewmB257
Cla006001Cucurbita pepo (Zucchini)cpewmB326
Cla006001Cucurbita pepo (Zucchini)cpewmB605
Cla006001Cucurbita pepo (Zucchini)cpewmB700
Cla006001Cucurbita pepo (Zucchini)cpewmB841
Cla006001Bottle gourd (USVL1VR-Ls)lsiwmB013
Cla006001Bottle gourd (USVL1VR-Ls)lsiwmB356
Cla006001Bottle gourd (USVL1VR-Ls)lsiwmB359
Cla006001Cucumber (Gy14) v2cgybwmB114
Cla006001Cucumber (Gy14) v2cgybwmB207
Cla006001Melon (DHL92) v3.6.1medwmB401
Cla006001Melon (DHL92) v3.6.1medwmB444
Cla006001Silver-seed gourdcarwmB0750
Cla006001Silver-seed gourdcarwmB0778
Cla006001Silver-seed gourdcarwmB0960
Cla006001Cucumber (Chinese Long) v3cucwmB130
Cla006001Cucumber (Chinese Long) v3cucwmB227
Cla006001Watermelon (97103) v2wmwmbB161
Cla006001Watermelon (97103) v2wmwmbB165
Cla006001Watermelon (97103) v2wmwmbB175