Cla006000 (gene) Watermelon (97103) v1

Overview
NameCla006000
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 2127221 .. 2127505 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATTCACTTTCCTTTTAGCCATTTTGCTTCTTCTTGCCAATGCTCATCAGCTCCAAAGTTGTAGAACCATGAAACATGATCGTCAAAATTGGTCCATGCTGATTCAACAGTCGCTGCAGAGGGCGCCCGTACCTCCGTCCGCCCGAGACGGTGGCACCAACATTCCGGTTCCGGTTGGGCAACAGGCCTTTGCCGGAAAATTCACGGCGCCGCCGGCATACGCCTATCCAGATCATCTATTGGTTCCTTCTGGTGTGGCCTTGAAGACAAATTGA

mRNA sequence

ATGAAGATCCAATTCACTTTCCTTTTAGCCATTTTGCTTCTTCTTGCCAATGCTCATCAGCTCCAAAGTTGTAGAACCATGAAACATGATCGTCAAAATTGGTCCATGCTGATTCAACAGTCGCTGCAGAGGGCGCCCGTACCTCCGTCCGCCCGAGACGGTGGCACCAACATTCCGGTTCCGGTTGGGCAACAGGCCTTTGCCGGAAAATTCACGGCGCCGCCGGCATACGCCTATCCAGATCATCTATTGGTTCCTTCTGGTGTGGCCTTGAAGACAAATTGA

Coding sequence (CDS)

ATGAAGATCCAATTCACTTTCCTTTTAGCCATTTTGCTTCTTCTTGCCAATGCTCATCAGCTCCAAAGTTGTAGAACCATGAAACATGATCGTCAAAATTGGTCCATGCTGATTCAACAGTCGCTGCAGAGGGCGCCCGTACCTCCGTCCGCCCGAGACGGTGGCACCAACATTCCGGTTCCGGTTGGGCAACAGGCCTTTGCCGGAAAATTCACGGCGCCGCCGGCATACGCCTATCCAGATCATCTATTGGTTCCTTCTGGTGTGGCCTTGAAGACAAATTGA

Protein sequence

MKIQFTFLLAILLLLANAHQLQSCRTMKHDRQNWSMLIQQSLQRAPVPPSARDGGTNIPVPVGQQAFAGKFTAPPAYAYPDHLLVPSGVALKTN
Homology
[Close]
BLAST of Cla006000 vs. TrEMBL
Match: A0A0A0LCY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-23
Identity = 59/82 (71.95%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 1  MKIQFTFLLAILLLLANAHQLQSCRTMKHDRQNWSM---LIQQSLQRAPVPPSARDGGTN 60
          MKIQF+FLLAIL+LLAN H LQSCRT+K D+QNWS+   L+QQSLQR PVPPSA++G TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPVGQQAFAGKFTAPPAYAY 80
          IPVPVGQ+AFAGK +A  A  Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

[Close]
BLAST of Cla006000 vs. NCBI nr
Match: gi|700202793|gb|KGN57926.1| (hypothetical protein Csa_3G393150 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-23
Identity = 59/82 (71.95%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 1  MKIQFTFLLAILLLLANAHQLQSCRTMKHDRQNWSM---LIQQSLQRAPVPPSARDGGTN 60
          MKIQF+FLLAIL+LLAN H LQSCRT+K D+QNWS+   L+QQSLQR PVPPSA++G TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPVGQQAFAGKFTAPPAYAY 80
          IPVPVGQ+AFAGK +A  A  Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

The following BLAST results are available for this feature:
BLAST of Cla006000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCY5_CUCSA1.5e-2371.95Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1[more]
BLAST of Cla006000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202793|gb|KGN57926.1|2.2e-2371.95hypothetical protein Csa_3G393150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006000Cla006000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006000Cla97C07G129110Watermelon (97103) v2wmwmbB175
Cla006000ClCG07G000830Watermelon (Charleston Gray)wcgwmB373
Cla006000CmaCh19G000710Cucurbita maxima (Rimu)cmawmB491
Cla006000CmoCh19G000800Cucurbita moschata (Rifu)cmowmB485
Cla006000Lsi05G009940Bottle gourd (USVL1VR-Ls)lsiwmB356
Cla006000Bhi05G000175Wax gourdwgowmB265
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006000Silver-seed gourdcarwmB0750
Cla006000Silver-seed gourdcarwmB0778
Cla006000Silver-seed gourdcarwmB0960
Cla006000Cucumber (Chinese Long) v3cucwmB130
Cla006000Cucumber (Chinese Long) v3cucwmB227
Cla006000Watermelon (97103) v2wmwmbB161
Cla006000Watermelon (97103) v2wmwmbB165
Cla006000Watermelon (97103) v1wmwmB099
Cla006000Watermelon (97103) v1wmwmB116
Cla006000Cucumber (Gy14) v1cgywmB475
Cla006000Cucurbita maxima (Rimu)cmawmB236
Cla006000Cucurbita maxima (Rimu)cmawmB558
Cla006000Cucurbita maxima (Rimu)cmawmB866
Cla006000Cucurbita moschata (Rifu)cmowmB223
Cla006000Cucurbita moschata (Rifu)cmowmB339
Cla006000Cucurbita moschata (Rifu)cmowmB551
Cla006000Cucurbita moschata (Rifu)cmowmB853
Cla006000Melon (DHL92) v3.5.1mewmB410
Cla006000Melon (DHL92) v3.5.1mewmB459
Cla006000Watermelon (Charleston Gray)wcgwmB324
Cla006000Cucumber (Chinese Long) v2cuwmB116
Cla006000Cucumber (Chinese Long) v2cuwmB221
Cla006000Cucurbita pepo (Zucchini)cpewmB257
Cla006000Cucurbita pepo (Zucchini)cpewmB326
Cla006000Cucurbita pepo (Zucchini)cpewmB605
Cla006000Cucurbita pepo (Zucchini)cpewmB700
Cla006000Cucurbita pepo (Zucchini)cpewmB841
Cla006000Bottle gourd (USVL1VR-Ls)lsiwmB013
Cla006000Bottle gourd (USVL1VR-Ls)lsiwmB359
Cla006000Cucumber (Gy14) v2cgybwmB114
Cla006000Cucumber (Gy14) v2cgybwmB207
Cla006000Melon (DHL92) v3.6.1medwmB401
Cla006000Melon (DHL92) v3.6.1medwmB444