Cla005973 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005973
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALL); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640
Location	Chr7 : 1864981 .. 1865562 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAATACTCTCTGAATTTGAAGCCCTCAACAACAACAACAACAATCAACAATTTGGATTAGTAGTATCCAACAATAATCTTCAAAATTTAGTTGTTGGTTCTTCTTCTTCGTCGTCTTCATCTTCATCTTCATCTTCAAGTCGTTACGAGAATCAAAAACGGCGAGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCACTTGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGGTATTTAGATCAATTTGGTAAAACCAAAGTTCATACTCCAATTTGCCCTTTTTATGGCCATCCTAACCCACCAGCCCCTTGCCCTTGCCCTCTACGTCAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTAGACTTCGGGCAGCCTTTGAAGAGAATGGTGGGATGCCCGAAGCTAATCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTTCGAGAAGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGCTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAACAACAAATTCCTCAATCAACTAATGGAGCTTGA

mRNA sequence

ATGGATTCAATACTCTCTGAATTTGAAGCCCTCAACAACAACAACAACAATCAACAATTTGGATTAGTAGTATCCAACAATAATCTTCAAAATTTAGTTGTTGGTTCTTCTTCTTCGTCGTCTTCATCTTCATCTTCATCTTCAAGTCGTTACGAGAATCAAAAACGGCGAGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCACTTGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGGTATTTAGATCAATTTGGTAAAACCAAAGTTCATACTCCAATTTGCCCTTTTTATGGCCATCCTAACCCACCAGCCCCTTGCCCTTGCCCTCTACGTCAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTAGACTTCGGGCAGCCTTTGAAGAGAATGGTGGGATGCCCGAAGCTAATCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTTCGAGAAGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGCTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAACAACAAATTCCTCAATCAACTAATGGAGCTTGA

Coding sequence (CDS)

ATGGATTCAATACTCTCTGAATTTGAAGCCCTCAACAACAACAACAACAATCAACAATTTGGATTAGTAGTATCCAACAATAATCTTCAAAATTTAGTTGTTGGTTCTTCTTCTTCGTCGTCTTCATCTTCATCTTCATCTTCAAGTCGTTACGAGAATCAAAAACGGCGAGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCACTTGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGGTATTTAGATCAATTTGGTAAAACCAAAGTTCATACTCCAATTTGCCCTTTTTATGGCCATCCTAACCCACCAGCCCCTTGCCCTTGCCCTCTACGTCAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTAGACTTCGGGCAGCCTTTGAAGAGAATGGTGGGATGCCCGAAGCTAATCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTTCGAGAAGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGCTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAACAACAAATTCCTCAATCAACTAATGGAGCTTGA

Protein sequence

MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQIPQSTNGA

Homology

[Close]

BLAST of Cla005973 vs. Swiss-Prot
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 8.6e-75
Identity = 136/166 (81.93%), Postives = 146/166 (87.95%), Query Frame = 1


Query: 23  VVSNNNLQNLVVGSSS-------SSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLAL 82
           ++SNN+  + V G++        SSSSS S++SSRYENQKRRDWNTF QYL+NHRPPL+L
Sbjct: 22  IISNNS--SSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSL 81

Query: 83  SRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 142
           SRCSGAHVLEFLRYLDQFGKTKVHT IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRA
Sbjct: 82  SRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 141

Query: 143 AFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 182
           AFEENGG PE NPFGARAVRLYLREVRD+QSKARG+SYEKKKRKRP
Sbjct: 142 AFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of Cla005973 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.8e-73
Identity = 133/164 (81.10%), Postives = 141/164 (85.98%), Query Frame = 1


Query: 26  NNNLQNLVVGSSSSSSSSSSSSS--------SRYENQKRRDWNTFCQYLKNHRPPLALSR 85
           N NL      +++++SSSSSSSS        SRYENQKRRDWNTF QYL+NHRPPL+LSR
Sbjct: 16  NTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSR 75

Query: 86  CSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 145
           CSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPAPC CPLRQAWGSLDALIGRLRAAF
Sbjct: 76  CSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAF 135

Query: 146 EENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 182
           EENGG PE NPFGARAVRLYLREVRD Q+KARGISYEKKKRKRP
Sbjct: 136 EENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of Cla005973 vs. Swiss-Prot
Match: G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.4e-72
Identity = 125/147 (85.03%), Postives = 134/147 (91.16%), Query Frame = 1


Query: 35  GSSSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFG 94
           G    S SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFG
Sbjct: 65  GGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFG 124

Query: 95  KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAV 154
           KTKVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAV
Sbjct: 125 KTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAV 184

Query: 155 RLYLREVRDLQSKARGISYEKKKRKRP 182
           RLYLREVR+ Q++ARGISYEKKKRK+P
Sbjct: 185 RLYLREVRETQARARGISYEKKKRKKP 211

[Close]

BLAST of Cla005973 vs. Swiss-Prot
Match: G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.4e-72
Identity = 125/147 (85.03%), Postives = 134/147 (91.16%), Query Frame = 1


Query: 35  GSSSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFG 94
           G    S SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFG
Sbjct: 65  GGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFG 124

Query: 95  KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAV 154
           KTKVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAV
Sbjct: 125 KTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAV 184

Query: 155 RLYLREVRDLQSKARGISYEKKKRKRP 182
           RLYLREVR+ Q++ARGISYEKKKRK+P
Sbjct: 185 RLYLREVRETQARARGISYEKKKRKKP 211

[Close]

BLAST of Cla005973 vs. Swiss-Prot
Match: G1L4_ORYSI (Protein G1-like4 OS=Oryza sativa subsp. indica GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 5.8e-71
Identity = 126/157 (80.25%), Postives = 139/157 (88.54%), Query Frame = 1


Query: 35  GSSSSSSSSSSS-----SSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRY 94
           GSSSS+SS S       S SRYE QKRRDWNTF QYL+NHRPPL+L++CSGAHVLEFLRY
Sbjct: 21  GSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRY 80

Query: 95  LDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPF 154
           LDQFGKTKVHT  CPF+GHP+PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG PE+NPF
Sbjct: 81  LDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPF 140

Query: 155 GARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQI 187
            ARAVRLYLREVR+ Q++ARG+SYEKKKRK+PQQQQ+
Sbjct: 141 AARAVRLYLREVREHQARARGVSYEKKKRKKPQQQQL 177

[Close]

BLAST of Cla005973 vs. TrEMBL
Match: A0A0A0LB62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383780 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.1e-99
Identity = 182/192 (94.79%), Postives = 186/192 (96.88%), Query Frame = 1


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSILSEFE+LNNNNN Q FG+VV+NN LQNLVVGSSSS  SSSSSSSSRYENQKRRDWN
Sbjct: 1   MDSILSEFESLNNNNN-QPFGVVVTNNTLQNLVVGSSSS--SSSSSSSSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQQQQIPQSTNG 193
           PQQQQI QS+NG
Sbjct: 181 PQQQQIAQSSNG 189

[Close]

BLAST of Cla005973 vs. TrEMBL
Match: A0A072VL17_MEDTR (G1-like protein OS=Medicago truncatula GN=MTR_1g069825 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.9e-81
Identity = 153/192 (79.69%), Postives = 164/192 (85.42%), Query Frame = 1


Query: 1   MDSILSEFEALNNNNN----NQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKR 60
           MDSI    ++ N++N+    N       SNNN+ N +VGSSS S S+++SS  RYENQKR
Sbjct: 1   MDSIQDFMDSCNSDNSCSLTNSTITTNSSNNNISNAIVGSSSPSGSTTTSS--RYENQKR 60

Query: 61  RDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCP 120
           RDWNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCP
Sbjct: 61  RDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCP 120

Query: 121 CPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKK 180
           CPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRDLQSKARGISYEKK
Sbjct: 121 CPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDLQSKARGISYEKK 180

Query: 181 KRKRPQQQQIPQ 189
           KRKRP QQQ  Q
Sbjct: 181 KRKRPPQQQPQQ 190

[Close]

BLAST of Cla005973 vs. TrEMBL
Match: A0A061DNN8_THECC (IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao GN=TCM_004015 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.6e-81
Identity = 150/175 (85.71%), Postives = 159/175 (90.86%), Query Frame = 1


Query: 13  NNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPP 72
           +++N++   L VSNN   +L    +SSSS SSSS+SSRYENQKRRDWNTF QYLKNHRPP
Sbjct: 8   DSSNSENASLNVSNNGTASL----ASSSSPSSSSTSSRYENQKRRDWNTFGQYLKNHRPP 67

Query: 73  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGR 132
           L+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGR
Sbjct: 68  LSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGR 127

Query: 133 LRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQIP 188
           LRAAFEENGG PEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP  QQIP
Sbjct: 128 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPAQQIP 178

[Close]

BLAST of Cla005973 vs. TrEMBL
Match: A0A072U2M0_MEDTR (G1-like protein OS=Medicago truncatula GN=MTR_7g097030 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 7.3e-81
Identity = 153/190 (80.53%), Postives = 159/190 (83.68%), Query Frame = 1


Query: 11  LNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSS----SSSSSSRYENQKRRDWNTFCQYL 70
           +NNNNNN       S         GSSSSS++S    S +SSSRYENQKRRDWNTF QYL
Sbjct: 21  MNNNNNNTISTTTTSLTTTTTTASGSSSSSAASTIINSPNSSSRYENQKRRDWNTFGQYL 80

Query: 71  KNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSL 130
           KNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSL
Sbjct: 81  KNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSL 140

Query: 131 DALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP---QQ 190
           DALIGRLRAAFEENGG PE NPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP   QQ
Sbjct: 141 DALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPPQQQ 200

Query: 191 QQIPQSTNGA 194
           QQ+P    GA
Sbjct: 201 QQVPPPAQGA 210

[Close]

BLAST of Cla005973 vs. TrEMBL
Match: A0A151U4F8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_006838 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 6.2e-80
Identity = 152/193 (78.76%), Postives = 165/193 (85.49%), Query Frame = 1


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSI    E+ +++  N    +  SNN+L    VGSS+S S+SS+++SSRYENQKRRDWN
Sbjct: 1   MDSIQEFMESCHSDITNTATTITTSNNSL----VGSSNSPSASSTTTSSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVR+LQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRELQSKARGISYEKKKRKR 180

Query: 181 -----PQQQQIPQ 189
                PQQQQ  Q
Sbjct: 181 PPPPTPQQQQQQQ 189

[Close]

BLAST of Cla005973 vs. NCBI nr
Match: gi|700202769|gb|KGN57902.1| (hypothetical protein Csa_3G383780 [Cucumis sativus])

HSP 1 Score: 369.8 bits (948), Expect = 2.9e-99
Identity = 182/192 (94.79%), Postives = 186/192 (96.88%), Query Frame = 1


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSILSEFE+LNNNNN Q FG+VV+NN LQNLVVGSSSS  SSSSSSSSRYENQKRRDWN
Sbjct: 1   MDSILSEFESLNNNNN-QPFGVVVTNNTLQNLVVGSSSS--SSSSSSSSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQQQQIPQSTNG 193
           PQQQQI QS+NG
Sbjct: 181 PQQQQIAQSSNG 189

[Close]

BLAST of Cla005973 vs. NCBI nr
Match: gi|659093194|ref|XP_008447416.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo])

HSP 1 Score: 367.5 bits (942), Expect = 1.5e-98
Identity = 181/192 (94.27%), Postives = 185/192 (96.35%), Query Frame = 1


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSILSEFE+LNNNNN   FG+VV+NN LQNLVVGSSSS  SSSSSSSSRYENQKRRDWN
Sbjct: 1   MDSILSEFESLNNNNN-PPFGVVVTNNTLQNLVVGSSSS--SSSSSSSSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQQQQIPQSTNG 193
           PQQQQI QS+NG
Sbjct: 181 PQQQQIAQSSNG 189

[Close]

BLAST of Cla005973 vs. NCBI nr
Match: gi|778681005|ref|XP_011651439.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 365.2 bits (936), Expect = 7.3e-98
Identity = 180/190 (94.74%), Postives = 184/190 (96.84%), Query Frame = 1


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSILSEFE+LNNNNN Q FG+VV+NN LQNLVVGSSSS  SSSSSSSSRYENQKRRDWN
Sbjct: 1   MDSILSEFESLNNNNN-QPFGVVVTNNTLQNLVVGSSSS--SSSSSSSSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQQQQIPQST 191
           PQQQQI QS+
Sbjct: 181 PQQQQIAQSS 187

[Close]

BLAST of Cla005973 vs. NCBI nr
Match: gi|778681002|ref|XP_004152052.2| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 364.8 bits (935), Expect = 9.5e-98
Identity = 180/189 (95.24%), Postives = 183/189 (96.83%), Query Frame = 1


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSILSEFE+LNNNNN Q FG+VV+NN LQNLVVGSSSS  SSSSSSSSRYENQKRRDWN
Sbjct: 1   MDSILSEFESLNNNNN-QPFGVVVTNNTLQNLVVGSSSS--SSSSSSSSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQQQQIPQS 190
           PQQQQI QS
Sbjct: 181 PQQQQIAQS 186

[Close]

BLAST of Cla005973 vs. NCBI nr
Match: gi|1012180484|ref|XP_015968040.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Arachis duranensis])

HSP 1 Score: 312.0 bits (798), Expect = 7.3e-82
Identity = 155/191 (81.15%), Postives = 163/191 (85.34%), Query Frame = 1


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSS---SSSSSSRYENQKRR 60
           MDSI    +  ++  N   F    +NNN  N V G+S SSSSS   S++SSSRYENQKRR
Sbjct: 1   MDSIQEFMDTCHSAGNT--FTTTTTNNNNNNTVAGTSGSSSSSPAGSTTSSSRYENQKRR 60

Query: 61  DWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPC 120
           DWNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPC
Sbjct: 61  DWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPC 120

Query: 121 PLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKK 180
           PLRQAWGSLDALIGRLRAAFEENGG PEANPFGARAVRLYLREVRDLQSKARGISYEKKK
Sbjct: 121 PLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKK 180

Query: 181 RKRPQQQQIPQ 189
           RKRP  QQ PQ
Sbjct: 181 RKRPPPQQQPQ 189

The following BLAST results are available for this feature:

BLAST of Cla005973 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSH3_ARATH	8.6e-75	81.93	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 ...	[more]
LSH4_ARATH	2.8e-73	81.10	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ...	[more]
G1L6_ORYSI	1.4e-72	85.03	Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1	[more]
G1L6_ORYSJ	1.4e-72	85.03	Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1	[more]
G1L4_ORYSI	5.8e-71	80.25	Protein G1-like4 OS=Oryza sativa subsp. indica GN=OsI_16643 PE=3 SV=1	[more]

BLAST of Cla005973 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB62_CUCSA	2.1e-99	94.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383780 PE=4 SV=1	[more]
A0A072VL17_MEDTR	1.9e-81	79.69	G1-like protein OS=Medicago truncatula GN=MTR_1g069825 PE=4 SV=1	[more]
A0A061DNN8_THECC	5.6e-81	85.71	IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao GN=TCM_004015 P...	[more]
A0A072U2M0_MEDTR	7.3e-81	80.53	G1-like protein OS=Medicago truncatula GN=MTR_7g097030 PE=4 SV=1	[more]
A0A151U4F8_CAJCA	6.2e-80	78.76	Uncharacterized protein OS=Cajanus cajan GN=KK1_006838 PE=4 SV=1	[more]

BLAST of Cla005973 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202769\|gb\|KGN57902.1\|	2.9e-99	94.79	hypothetical protein Csa_3G383780 [Cucumis sativus]	[more]
gi\|659093194\|ref\|XP_008447416.1\|	1.5e-98	94.27	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo]	[more]
gi\|778681005\|ref\|XP_011651439.1\|	7.3e-98	94.74	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativu...	[more]
gi\|778681002\|ref\|XP_004152052.2\|	9.5e-98	95.24	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativu...	[more]
gi\|1012180484\|ref\|XP_015968040.1\|	7.3e-82	81.15	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0048439	flower morphogenesis
biological_process	GO:0010492	maintenance of shoot apical meristem identity
biological_process	GO:0010014	meristem initiation
biological_process	GO:0010199	organ boundary specification between lateral organs and the meristem
biological_process	GO:0048441	petal development
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0048834	specification of petal number
biological_process	GO:0048438	floral whorl development
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005973	Cla005973.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 43..163 score: 8.0
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 50..177 score: 84
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 2..189 score: 4.1E
None	No IPR available	PANTHER	PTHR31165:SF13	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED	coord: 2..189 score: 4.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla005973	CmaCh19G000930	Cucurbita maxima (Rimu)	cmawmB491
Cla005973	Cp4.1LG15g00860	Cucurbita pepo (Zucchini)	cpewmB257

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005973	Silver-seed gourd	carwmB0216
Cla005973	Silver-seed gourd	carwmB0750
Cla005973	Silver-seed gourd	carwmB0778
Cla005973	Silver-seed gourd	carwmB0960
Cla005973	Silver-seed gourd	carwmB1073
Cla005973	Cucumber (Chinese Long) v3	cucwmB130
Cla005973	Cucumber (Chinese Long) v3	cucwmB227
Cla005973	Cucumber (Chinese Long) v3	cucwmB228
Cla005973	Watermelon (97103) v2	wmwmbB161
Cla005973	Watermelon (97103) v2	wmwmbB165
Cla005973	Watermelon (97103) v2	wmwmbB175
Cla005973	Wax gourd	wgowmB060
Cla005973	Wax gourd	wgowmB186
Cla005973	Wax gourd	wgowmB265
Cla005973	Watermelon (97103) v1	wmwmB099
Cla005973	Watermelon (97103) v1	wmwmB116
Cla005973	Cucumber (Gy14) v1	cgywmB039
Cla005973	Cucumber (Gy14) v1	cgywmB475
Cla005973	Cucumber (Gy14) v1	cgywmB689
Cla005973	Cucurbita maxima (Rimu)	cmawmB236
Cla005973	Cucurbita maxima (Rimu)	cmawmB340
Cla005973	Cucurbita maxima (Rimu)	cmawmB558
Cla005973	Cucurbita maxima (Rimu)	cmawmB796
Cla005973	Cucurbita maxima (Rimu)	cmawmB866
Cla005973	Cucurbita moschata (Rifu)	cmowmB223
Cla005973	Cucurbita moschata (Rifu)	cmowmB337
Cla005973	Cucurbita moschata (Rifu)	cmowmB485
Cla005973	Cucurbita moschata (Rifu)	cmowmB551
Cla005973	Cucurbita moschata (Rifu)	cmowmB790
Cla005973	Cucurbita moschata (Rifu)	cmowmB853
Cla005973	Melon (DHL92) v3.5.1	mewmB357
Cla005973	Melon (DHL92) v3.5.1	mewmB410
Cla005973	Melon (DHL92) v3.5.1	mewmB459
Cla005973	Watermelon (Charleston Gray)	wcgwmB280
Cla005973	Watermelon (Charleston Gray)	wcgwmB324
Cla005973	Watermelon (Charleston Gray)	wcgwmB373
Cla005973	Cucumber (Chinese Long) v2	cuwmB116
Cla005973	Cucumber (Chinese Long) v2	cuwmB220
Cla005973	Cucumber (Chinese Long) v2	cuwmB221
Cla005973	Cucurbita pepo (Zucchini)	cpewmB147
Cla005973	Cucurbita pepo (Zucchini)	cpewmB326
Cla005973	Cucurbita pepo (Zucchini)	cpewmB605
Cla005973	Cucurbita pepo (Zucchini)	cpewmB700
Cla005973	Cucurbita pepo (Zucchini)	cpewmB841
Cla005973	Bottle gourd (USVL1VR-Ls)	lsiwmB013
Cla005973	Bottle gourd (USVL1VR-Ls)	lsiwmB356
Cla005973	Bottle gourd (USVL1VR-Ls)	lsiwmB359
Cla005973	Cucumber (Gy14) v2	cgybwmB114
Cla005973	Cucumber (Gy14) v2	cgybwmB206
Cla005973	Cucumber (Gy14) v2	cgybwmB207
Cla005973	Melon (DHL92) v3.6.1	medwmB355
Cla005973	Melon (DHL92) v3.6.1	medwmB401
Cla005973	Melon (DHL92) v3.6.1	medwmB444