Cla005879 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005879
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 7791661 .. 7792014 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTGTCAAACCAAATTGCAAAGACCAAACTATCAACTTCTTTCACTCTTCCAACAATAATCTTAAAATCAATATTGTTTTTGTCTTTGAACAGTCTTACAATCCTTGTGTTATTTGCAGGCAGTGCAGTGGGGACTGTGATTTTTCATGGCCTTCCCTCTTCTGCCATTGATGCCTTTGTTATCTCAATTGTCTTTGCTTTTTCAGGTGCTTTGAGTGCTCTTTTGGTTCCTCAAAGGCAAAACTTAGCAAAATTTTGTGCCTTGTATTCTATGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGATTTGGGGACTGTATCATATACTCATTATTGGCAAACCTCACTAG

mRNA sequence

ATGAGATTGTCAAACCAAATTGCAAAGACCAAACTATCAACTTCTTTCACTCTTCCAACAATAATCTTAAAATCAATATTGTTTTTGTCTTTGAACAGTCTTACAATCCTTGTGTTATTTGCAGGCAGTGCAGTGGGGACTGTGATTTTTCATGGCCTTCCCTCTTCTGCCATTGATGCCTTTGTTATCTCAATTGTCTTTGCTTTTTCAGGTGCTTTGAGTGCTCTTTTGGTTCCTCAAAGGCAAAACTTAGCAAAATTTTGTGCCTTGTATTCTATGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGATTTGGGGACTGTATCATATACTCATTATTGGCAAACCTCACTAG

Coding sequence (CDS)

ATGAGATTGTCAAACCAAATTGCAAAGACCAAACTATCAACTTCTTTCACTCTTCCAACAATAATCTTAAAATCAATATTGTTTTTGTCTTTGAACAGTCTTACAATCCTTGTGTTATTTGCAGGCAGTGCAGTGGGGACTGTGATTTTTCATGGCCTTCCCTCTTCTGCCATTGATGCCTTTGTTATCTCAATTGTCTTTGCTTTTTCAGGTGCTTTGAGTGCTCTTTTGGTTCCTCAAAGGCAAAACTTAGCAAAATTTTGTGCCTTGTATTCTATGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGATTTGGGGACTGTATCATATACTCATTATTGGCAAACCTCACTAG

Protein sequence

MRLSNQIAKTKLSTSFTLPTIILKSILFLSLNSLTILVLFAGSAVGTVIFHGLPSSAIDAFVISIVFAFSGALSALLVPQRQNLAKFCALYSMASMASALLLLIWGLYHILIIGKPH

Homology

[Close]

BLAST of Cla005879 vs. TrEMBL
Match: A0A0A0KLQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137420 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.2e-47
Identity = 101/115 (87.83%), Postives = 108/115 (93.91%), Query Frame = 1


Query: 1   MRLSNQIAKTKLSTSFTLPTIILKSILFLSLNSLTILVLFAGSAVGTVIFHGLPSSAIDA 60
           M+LSNQIA  KL TSFTLPTIILKSILFLSLNSLTIL+LFAGSAVGTVIFHG PSSAIDA
Sbjct: 12  MKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGTVIFHGFPSSAIDA 71

Query: 61  FVISIVFAFSGALSALLVPQRQNLAKFCALYSMASMASALLLLIWGLYHILIIGK 116
           F+ISIVFAFSGALSALLVPQR  LA+FCALYS+AS+ASALLLLIWGLYH LI+GK
Sbjct: 72  FIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLIWGLYHTLILGK 126

[Close]

BLAST of Cla005879 vs. TrEMBL
Match: A0A0A0KN11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137400 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 1


Query: 11  KLSTSFTLPTIILKSILFLSLNSLTILVLFAGSAV---GTVIFHGL--PSSAIDAFVISI 70
           K+ ++    T +L SILF+S N+LTIL+  +  +      VIF+ L  PS A DAFV+SI
Sbjct: 7   KMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAFVLSI 66

Query: 71  VFAFSGALSALLVPQRQNLAKFCALYSMASMASALLLLIWGLYHIL 112
            F+FS AL ALL+P +  LA + A YS+A MA AL LLI GLY+ +
Sbjct: 67  TFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI 112

[Close]

BLAST of Cla005879 vs. TrEMBL
Match: A0A061E956_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011399 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-13
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 1


Query: 5   NQIAKTKLSTSFTLPTIILKSILFLSLNSLTILVLFA-----GSAVGTVIFHGLPSSAID 64
           + ++ +++ +S  + T IL+SILF+S    TIL+L       GS V  ++F G P++   
Sbjct: 18  HHVSFSEMLSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHPAT-FH 77

Query: 65  AFVISIVFAFSGALSALLVPQRQNLAKFCALYSMASMASALLLLIWGL 108
           AF I I+FAFSGA  AL+ P    +A  C  YS+ASMASA+ LLIW +
Sbjct: 78  AFTICIIFAFSGAFCALMTPNSPRIASLCGCYSIASMASAIGLLIWAV 124

[Close]

BLAST of Cla005879 vs. TrEMBL
Match: A0A0A0KT20_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G607970 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-11
Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = 1


Query: 11  KLSTSFTLPTIILKSILFLSLNSLTILVLFA-----GSAVGTVIFHGLPSSAIDAFVISI 70
           K  +S  + T +L SIL LS  ++T+++LF      G+ V  +IF GLPS+   AF++SI
Sbjct: 33  KTCSSLDISTNLLYSILCLSFKTVTLILLFPYEQVNGNLVPAIIFKGLPST-FHAFLLSI 92

Query: 71  VFAFSGALSAL-LVPQRQNLAKFCALYSMASMASALLLLIWGLY 109
           V AFSGA +AL L   +  +AKFC+ YS+  M SA++L  W ++
Sbjct: 93  VMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVLFFWAVF 135

[Close]

BLAST of Cla005879 vs. TrEMBL
Match: D7TA98_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g00800 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 39/93 (41.94%), Postives = 62/93 (66.67%), Query Frame = 1


Query: 21  IILKSILFLSLNSLTILVLFA-----GSAVGTVIFHGLPSSAIDAFVISIVFAFSGALSA 80
           + L  ILF+S +  T L++       G+ V T+IF G PS    AFVI + FAF+GAL+A
Sbjct: 44  VTLTVILFISFSIATSLMVVPSEQIDGNPVPTIIFKGHPS-IFHAFVILVSFAFNGALTA 103

Query: 81  LLVPQRQNLAKFCALYSMASMASALLLLIWGLY 109
           L++  +  +A+FC+ +S+ASMASA+ LL++ ++
Sbjct: 104 LMMENQSKIARFCSYFSIASMASAMSLLVFAIF 135

[Close]

BLAST of Cla005879 vs. NCBI nr
Match: gi|700194632|gb|KGN49809.1| (hypothetical protein Csa_5G137420 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 4.6e-47
Identity = 101/115 (87.83%), Postives = 108/115 (93.91%), Query Frame = 1


Query: 1   MRLSNQIAKTKLSTSFTLPTIILKSILFLSLNSLTILVLFAGSAVGTVIFHGLPSSAIDA 60
           M+LSNQIA  KL TSFTLPTIILKSILFLSLNSLTIL+LFAGSAVGTVIFHG PSSAIDA
Sbjct: 12  MKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGTVIFHGFPSSAIDA 71

Query: 61  FVISIVFAFSGALSALLVPQRQNLAKFCALYSMASMASALLLLIWGLYHILIIGK 116
           F+ISIVFAFSGALSALLVPQR  LA+FCALYS+AS+ASALLLLIWGLYH LI+GK
Sbjct: 72  FIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLIWGLYHTLILGK 126

[Close]

BLAST of Cla005879 vs. NCBI nr
Match: gi|700194630|gb|KGN49807.1| (hypothetical protein Csa_5G137400 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 1


Query: 11  KLSTSFTLPTIILKSILFLSLNSLTILVLFAGSAV---GTVIFHGL--PSSAIDAFVISI 70
           K+ ++    T +L SILF+S N+LTIL+  +  +      VIF+ L  PS A DAFV+SI
Sbjct: 7   KMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAFVLSI 66

Query: 71  VFAFSGALSALLVPQRQNLAKFCALYSMASMASALLLLIWGLYHIL 112
            F+FS AL ALL+P +  LA + A YS+A MA AL LLI GLY+ +
Sbjct: 67  TFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI 112

[Close]

BLAST of Cla005879 vs. NCBI nr
Match: gi|590698395|ref|XP_007045703.1| (Uncharacterized protein TCM_011399 [Theobroma cacao])

HSP 1 Score: 82.8 bits (203), Expect = 4.4e-13
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 1


Query: 5   NQIAKTKLSTSFTLPTIILKSILFLSLNSLTILVLFA-----GSAVGTVIFHGLPSSAID 64
           + ++ +++ +S  + T IL+SILF+S    TIL+L       GS V  ++F G P++   
Sbjct: 18  HHVSFSEMLSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHPAT-FH 77

Query: 65  AFVISIVFAFSGALSALLVPQRQNLAKFCALYSMASMASALLLLIWGL 108
           AF I I+FAFSGA  AL+ P    +A  C  YS+ASMASA+ LLIW +
Sbjct: 78  AFTICIIFAFSGAFCALMTPNSPRIASLCGCYSIASMASAIGLLIWAV 124

[Close]

BLAST of Cla005879 vs. NCBI nr
Match: gi|700196832|gb|KGN52009.1| (hypothetical protein Csa_5G607970 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-11
Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = 1


Query: 11  KLSTSFTLPTIILKSILFLSLNSLTILVLFA-----GSAVGTVIFHGLPSSAIDAFVISI 70
           K  +S  + T +L SIL LS  ++T+++LF      G+ V  +IF GLPS+   AF++SI
Sbjct: 33  KTCSSLDISTNLLYSILCLSFKTVTLILLFPYEQVNGNLVPAIIFKGLPST-FHAFLLSI 92

Query: 71  VFAFSGALSAL-LVPQRQNLAKFCALYSMASMASALLLLIWGLY 109
           V AFSGA +AL L   +  +AKFC+ YS+  M SA++L  W ++
Sbjct: 93  VMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVLFFWAVF 135

[Close]

BLAST of Cla005879 vs. NCBI nr
Match: gi|297738219|emb|CBI27420.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-09
Identity = 39/93 (41.94%), Postives = 62/93 (66.67%), Query Frame = 1


Query: 21  IILKSILFLSLNSLTILVLFA-----GSAVGTVIFHGLPSSAIDAFVISIVFAFSGALSA 80
           + L  ILF+S +  T L++       G+ V T+IF G PS    AFVI + FAF+GAL+A
Sbjct: 44  VTLTVILFISFSIATSLMVVPSEQIDGNPVPTIIFKGHPS-IFHAFVILVSFAFNGALTA 103

Query: 81  LLVPQRQNLAKFCALYSMASMASALLLLIWGLY 109
           L++  +  +A+FC+ +S+ASMASA+ LL++ ++
Sbjct: 104 LMMENQSKIARFCSYFSIASMASAMSLLVFAIF 135

The following BLAST results are available for this feature:

BLAST of Cla005879 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLQ9_CUCSA	3.2e-47	87.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137420 PE=4 SV=1	[more]
A0A0A0KN11_CUCSA	1.4e-13	48.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137400 PE=4 SV=1	[more]
A0A061E956_THECC	3.0e-13	42.59	Uncharacterized protein OS=Theobroma cacao GN=TCM_011399 PE=4 SV=1	[more]
A0A0A0KT20_CUCSA	2.2e-11	42.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G607970 PE=4 SV=1	[more]
D7TA98_VITVI	2.0e-09	41.94	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g00800 PE=4 SV=...	[more]

BLAST of Cla005879 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194632\|gb\|KGN49809.1\|	4.6e-47	87.83	hypothetical protein Csa_5G137420 [Cucumis sativus]	[more]
gi\|700194630\|gb\|KGN49807.1\|	2.0e-13	48.11	hypothetical protein Csa_5G137400 [Cucumis sativus]	[more]
gi\|590698395\|ref\|XP_007045703.1\|	4.4e-13	42.59	Uncharacterized protein TCM_011399 [Theobroma cacao]	[more]
gi\|700196832\|gb\|KGN52009.1\|	3.1e-11	42.31	hypothetical protein Csa_5G607970 [Cucumis sativus]	[more]
gi\|297738219\|emb\|CBI27420.3\|	2.9e-09	41.94	unnamed protein product [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005879	Cla005879.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla005879	Cla97C01G007750	Watermelon (97103) v2	wmwmbB236
Cla005879	Csa5G137400	Cucumber (Chinese Long) v2	cuwmB409
Cla005879	ClCG01G007380	Watermelon (Charleston Gray)	wcgwmB143
Cla005879	CSPI05G02630	Wild cucumber (PI 183967)	cpiwmB417
Cla005879	Cucsa.374370	Cucumber (Gy14) v1	cgywmB675
Cla005879	CmoCh15G008740	Cucurbita moschata (Rifu)	cmowmB268
Cla005879	Cp4.1LG01g19030	Cucurbita pepo (Zucchini)	cpewmB440
Cla005879	CsGy5G012720	Cucumber (Gy14) v2	cgybwmB382
Cla005879	CsaV3_5G018830	Cucumber (Chinese Long) v3	cucwmB434

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005879	Cucurbita pepo (Zucchini)	cpewmB184
Cla005879	Bottle gourd (USVL1VR-Ls)	lsiwmB028
Cla005879	Melon (DHL92) v3.6.1	medwmB028
Cla005879	Silver-seed gourd	carwmB0472
Cla005879	Silver-seed gourd	carwmB0830
Cla005879	Wax gourd	wgowmB075
Cla005879	Cucurbita maxima (Rimu)	cmawmB278
Cla005879	Cucurbita maxima (Rimu)	cmawmB710
Cla005879	Cucurbita moschata (Rifu)	cmowmB706
Cla005879	Melon (DHL92) v3.5.1	mewmB030