Cla005741 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005741
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Retrotransposon protein (AHRD V1 -- E5GCB5_CUCME)
Location	Chr11 : 10964010 .. 10964743 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCATCCCGATCACGCGCAAGAGCCGCAAAACATATATGGACGGATGAGGAGGATAAAATCCTCGTGGAGTATTTGGTCCAGTGTGTGCAGTCTGGACACTGGTGAGCTGATAACGGGACTTTTCGACCTGGATTCCTATCAAACATACTACGGATGATGTAGCAGAAGGTACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAGAGACAGTACAGCGCGATCGCTGAAATGTTGGGCCCAGACTGTAGTGGGTTTGTGGAATGCGGAGCGCAAATGTATTGATTGTGAGGCGGAGATATTTGATGCATGGGTCAAGTTAATTTAATTACATGTTTTATTTATTTCTTCTTCGTTTAAATTTGTATAGGCCACATAACACAAGTCACCTTTAACAGAGTCATCCGAGTGCAAAAGAACTGCGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAGAACGAGGACATCCTGAACAACCAGTCCCTAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGCTCGCCCACGTTAGAGGATTTTTCGACTACCCCAGCGGTAGAGGGTCTGGGAGTAGCTTGCCATCAAGGAGTAGGAGGTACTGAAGTTCATTGA

mRNA sequence

ATGGAAGCATCCCGATCACGCGCAAGAGCCGCAAAACATATATGGACGGATGAGGAGGATAAAATCCTCGTGGAGTATTTGGTCCAGTGTGTGCAGTCTGGACACTGTCATCCGAGTGCAAAAGAACTGCGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAGAACGAGGACATCCTGAACAACCAGTCCCTAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGCTCGCCCACGTTAGAGGATTTTTCGACTACCCCAGCGGTAGAGGGTCTGGGAGTAGCTTGCCATCAAGGAGTAGGAGGTACTGAAGTTCATTGA

Coding sequence (CDS)

ATGGAAGCATCCCGATCACGCGCAAGAGCCGCAAAACATATATGGACGGATGAGGAGGATAAAATCCTCGTGGAGTATTTGGTCCAGTGTGTGCAGTCTGGACACTGTCATCCGAGTGCAAAAGAACTGCGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAGAACGAGGACATCCTGAACAACCAGTCCCTAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGCTCGCCCACGTTAGAGGATTTTTCGACTACCCCAGCGGTAGAGGGTCTGGGAGTAGCTTGCCATCAAGGAGTAGGAGGTACTGAAGTTCATTGA

Protein sequence

MEASRSRARAAKHIWTDEEDKILVEYLVQCVQSGHCHPSAKELRHKSFPYYDDLAIVFGKDRATGSHATTTAEVGSEPVMEEENEDILNNQSLDFENFYIPDPPFASSPTLEDFSTTPAVEGLGVACHQGVGGTEVH

Homology

[Close]

BLAST of Cla005741 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 5   RSRARAAKHIWTDEEDKILVEYLVQCVQSGHCHPSAKELRHKSFPYYDDLAIVFGKDRAT 64
           R R R  K +WT  ED+ LVE LV+   SG  H  A  LR K FP++DDL++VFGKDRA 
Sbjct: 377 RGRGRN-KRVWTPGEDEKLVECLVELCVSGKGHKDANGLRLKPFPHFDDLSLVFGKDRAN 436

Query: 65  GSHATTTAEVGSE 78
           G  A + A++  E
Sbjct: 437 GKGAMSAADILEE 448

[Close]

BLAST of Cla005741 vs. TrEMBL
Match: A0A161WV79_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011368 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1


Query: 37  HPSAKELRHKSFPYYDDLAIVFGKDRATGSHATTTAEVGSEPVMEEEN 85
           HP+AK LR+KSFPYYD+L+ VFGKDRA G    + A+   E   EEEN
Sbjct: 55  HPNAKGLRNKSFPYYDELSQVFGKDRANGECVESPADAAEEIANEEEN 102

[Close]

BLAST of Cla005741 vs. TrEMBL
Match: M5VKI8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016911mg PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-06
Identity = 42/100 (42.00%), Postives = 53/100 (53.00%), Query Frame = 1


Query: 15  WTDEEDKILVEYLV--QCVQSGHCHPSAKELRHKSFPYYDDLAIVFGKDRATGSHATTTA 74
           W DEE  ++ E  V    V+    H SAK LR+K FP+YD L  VFGKDRA G  A   A
Sbjct: 23  WNDEEKMVVCEKQVFDDWVK---VHNSAKRLRNKQFPHYDTLVEVFGKDRANGKGAEGPA 82

Query: 75  EVGSEPVMEEENEDILNNQSLDFENFYIPDPPFASSPTLE 113
           EV          ED+ +N + +FE   + D  F SSPT +
Sbjct: 83  EV---------IEDLTDNNTFNFEGDGLDDINF-SSPTTQ 109

[Close]

BLAST of Cla005741 vs. TrEMBL
Match: A0A161XV48_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-06
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1


Query: 37  HPSAKELRHKSFPYYDDLAIVFGKDRATGSHATTTAEVGSEPVMEEEN 85
           HP+AK LR+KSFPYYD+L+ VFGKDRA G    + A+   E   EEEN
Sbjct: 124 HPNAKGLRNKSFPYYDELSQVFGKDRANGECVESPADAVEEIANEEEN 171

[Close]

BLAST of Cla005741 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 48/130 (36.92%), Postives = 60/130 (46.15%), Query Frame = 1


Query: 6   SRARAAKHIWTDEEDKILVEYLVQCVQSG------------------------------- 65
           S +RA KH WT EE+  LVE LV+ V +G                               
Sbjct: 3   SSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQ 62

Query: 66  -------HCHPSAKELRHKSFPYYDDLAIVFGKDRATGSHATTTAEVGSE---------P 89
                    HP+AK L HKSFPYYDDL+ VFG D ATG+H+ T A+ GS          P
Sbjct: 63  GSPTIDCRSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVP 122

[Close]

BLAST of Cla005741 vs. NCBI nr
Match: gi|659125959|ref|XP_008462939.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-09
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1


Query: 37  HPSAKELRHKSFPYYDDLAIVFGKDRATGSHATTTAEVGSEPVMEEENEDILNNQSLDFE 96
           HP+A++L +K FPY+ DL IVFG+D ATG    T  E+GS+   + E +D+     ++ E
Sbjct: 86  HPNARDLLNKPFPYFYDLKIVFGRDMATGDRCKTPVEMGSQTARDTEEDDM----DINLE 145

Query: 97  NFYIPDPPFASSPTLEDFSTTP 119
           +F IP+P     P+ ED  +TP
Sbjct: 146 DFDIPNPHGLEPPSGEDMPSTP 163

[Close]

BLAST of Cla005741 vs. NCBI nr
Match: gi|659125959|ref|XP_008462939.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 32.3 bits (72), Expect = 7.9e+02
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 1


Query: 8  ARAAKHIWTDEEDKILVEYLVQCVQSG 35
          ++A KH WT  ED+ LVE L+Q V+ G
Sbjct: 6  SKATKHRWTTIEDETLVECLLQLVEEG 32

HSP 2 Score: 70.9 bits (172), Expect = 2.0e-09
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 37  HPSAKELRHKSFPYYDDLAIVFGKDRATGSHATTTAEVGSEPVMEEENEDILNNQSLDFE 96
           HP+A+ L +KSFPY+ DL I+FG+DRATG    T  E+G +   + E +D+     ++ E
Sbjct: 31  HPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKTPIEMGLQIARDTEEDDM----DINLE 90

Query: 97  NFYIPDPPFASSPTLEDFSTTP 119
           +F IP+P     P+ ED S+TP
Sbjct: 91  DFDIPNPHGLEPPSGEDMSSTP 108

[Close]

BLAST of Cla005741 vs. NCBI nr
Match: gi|147779878|emb|CAN65842.1| (hypothetical protein VITISV_027369 [Vitis vinifera])

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-08
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 5   RSRARAAKHIWTDEEDKILVEYLVQCVQSGHCHPSAKELRHKSFPYYDDLAIVFGKDRAT 64
           R R R  K +WT  ED+ LVE LV+   SG  H  A  LR K FP++DDL++VFGKDRA 
Sbjct: 377 RGRGRN-KRVWTPGEDEKLVECLVELCVSGKGHKDANGLRLKPFPHFDDLSLVFGKDRAN 436

Query: 65  GSHATTTAEVGSE 78
           G  A + A++  E
Sbjct: 437 GKGAMSAADILEE 448

[Close]

BLAST of Cla005741 vs. NCBI nr
Match: gi|659125386|ref|XP_008462659.1| (PREDICTED: uncharacterized protein LOC103500963 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-08
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 37  HPSAKELRHKSFPYYDDLAIVFGKDRATGSHATTTAEVGSEPVMEEENEDILNNQSLDFE 96
           HP+A+ L +K+FPY+ DL +VFG+DRAT     T  ++GS+   + E +D+     ++ E
Sbjct: 32  HPNARGLLNKAFPYFYDLEVVFGRDRATIGRCKTPVQMGSQIAKDTEEDDM----DINLE 91

Query: 97  NFYIPDPPFASSPTLEDFSTTP 119
           +F IP+P     P+ ED ++TP
Sbjct: 92  DFDIPNPHELEPPSREDMTSTP 109

The following BLAST results are available for this feature:

BLAST of Cla005741 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BND9_VITVI	1.2e-08	49.32	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1	[more]
A0A161WV79_DAUCA	2.5e-06	58.33	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011368 PE=4 SV=1	[more]
M5VKI8_PRUPE	3.2e-06	42.00	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016911mg PE=4 S...	[more]
A0A161XV48_DAUCA	5.5e-06	58.33	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1	[more]

BLAST of Cla005741 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113923\|ref\|XP_008456820.1\|	1.1e-10	36.92	PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo]	[more]
gi\|659125959\|ref\|XP_008462939.1\|	2.0e-09	41.46	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659125959\|ref\|XP_008462939.1\|	7.9e+02	51.85	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|147779878\|emb\|CAN65842.1\|	1.7e-08	49.32	hypothetical protein VITISV_027369 [Vitis vinifera]	[more]
gi\|659125386\|ref\|XP_008462659.1\|	1.7e-08	39.02	PREDICTED: uncharacterized protein LOC103500963 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005741	Cla005741.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005741	Wax gourd	wgowmB138
Cla005741	Cucumber (Gy14) v1	cgywmB341
Cla005741	Cucurbita maxima (Rimu)	cmawmB176
Cla005741	Cucurbita maxima (Rimu)	cmawmB767
Cla005741	Cucurbita moschata (Rifu)	cmowmB163
Cla005741	Cucurbita moschata (Rifu)	cmowmB760
Cla005741	Wild cucumber (PI 183967)	cpiwmB166
Cla005741	Melon (DHL92) v3.5.1	mewmB422
Cla005741	Watermelon (Charleston Gray)	wcgwmB103
Cla005741	Cucumber (Chinese Long) v2	cuwmB163
Cla005741	Cucurbita pepo (Zucchini)	cpewmB814
Cla005741	Bottle gourd (USVL1VR-Ls)	lsiwmB117
Cla005741	Cucumber (Gy14) v2	cgybwmB155
Cla005741	Melon (DHL92) v3.6.1	medwmB411
Cla005741	Silver-seed gourd	carwmB0008
Cla005741	Cucumber (Chinese Long) v3	cucwmB175
Cla005741	Watermelon (97103) v2	wmwmbB358