Cla005720 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005720
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	tRNA/rRNA methyltransferase family protein (AHRD V1 ***- D7M9L1_ARALL)
Location	Chr10 : 8577551 .. 8579164 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATGCTCCTGCGTTTCCTGGTCCTCAACTCTGAAACTCGGACCTTCCTTTCCCAAATCGAAGCTATCATCAATTAACCAAGCAGAGGCCATCGATTTTGCTGGAAGAATTTCTCTTCCTTCTCATGTGAAAGCCATCACCAGCACCTCCAACCCCTTCGTTAAGCACTGCGTCAAACTTCGCTTCAGTTCTTCTTATCGCCACTTCTATGGCTCCGTTCTTGTCGTCGGAGCTACTCCAATAAGGTTCTCTCTTAATAAGTTACTTTGCCCCCAATTTTTCTGGGTTCTGTTCATGATTGTCAGTTCCTGATTGAAATACCAAAGTAGTCTATGCGGGGTTTTATTTTTTGAATATTTTTTTGATTAAATTTCATTTGTTCTCGAGCAAGGGACTGTAGACCCTTGAATTTCCTTTGCAAATCTATCATATGGGTTAATAAATCAATTTTCTAACATGGATTTTTAGTACTTCGTCTCTCATGCTATTTTTCGTCCATACTATTTCTAATTGCCCATTTCAGTTTTGTGTCTGGTGTTTTGCTGGCGAATGCTTTGAAGAACTGAGTTCTTGGAATCAAGTCCTGTGTATAGCAATTTTGTGACTTAAAATTTTGGAAGCACCCTTAAGCTTCATCCAGTGTTGTATTTGCTTGTGACTATTCGCTAATTGATCTATGATGTAGTTTCTGTTCTTTGAACTTTGGAAAGTCGATGTTGATTTGGAAAATGATACATTGTTGGCGCTATGTAGAATCTGTGCTGTCCTGCAACAATTTCTGCATAAATTCTCTCTTCTGAAGTCATATTTTGTCTTTCTAGTTACTCCATTTAATCTATAGGTTACTCCCTCCATGGTTGGCAAGGAAGACAATCCTATTCCTCTGTTGTGTGGATGCTTACACATATTGCAGTTCATTTTTAGTTAGAATTGTTCAAAGTTTACGTGTGGTCTGCTGGTCTTCGTATATATCTACTCCAATCATTTCGTGATAGATTATTTATATTTATTCTAAGAACAGTATCTAGGATAAAATAATGTAATCTATATATCCTAGTTCACTGTTCTTGGAGCATGGCAAACTTCATGTAATGGTCTTCCCATGAGAAAATTTACCGACACTTTTCCATGAGATTAGCTCTCCCTCCCCTTAGGAGTTCTAATTCTGTCTTGTATCAGTTCATTTTTCTGAAGTGGTCATTCTTTGTGGTAAAATGTTTTGCTGGACTTCATTTGGTTTGTATGCACTGACATCTAATTTAAGTCTTTTACAGGGAAATTTGCCAGTTTCATGAGTCTCTGCATGGGATAACTTGTAAATTGGAGTGCCTACTTCTGCTAGATGACGTTGAGGTTCCTGATGGACTAGTTGATACAACATCTGTTCGCATTGTGCGGGTGAGCCCAACTGTGATGAAAAAGCTTTCTGGCATGCAATCAGTAGAATCTATTGATGCAATTGCCCTCATGAGAATACCTGCCAGTTTTTGTAGTGTAGATGGCAATGAAAAAGAAGTAGATTTTAAAAGATGTTTTCCATCTCCACATCGAATATTAGTCCTTGAGGGAATTCAGGTATTCTTTCATTTGGAGTTGAACGAAGTCTTGTGA

mRNA sequence

ATGCAATGCTCCTGCGTTTCCTGGTCCTCAACTCTGAAACTCGGACCTTCCTTTCCCAAATCGAAGCTATCATCAATTAACCAAGCAGAGGCCATCGATTTTGCTGGAAGAATTTCTCTTCCTTCTCATGTGAAAGCCATCACCAGCACCTCCAACCCCTTCGTTAAGCACTGCGTCAAACTTCGCTTCAGTTCTTCTTATCGCCACTTCTATGGCTCCGTTCTTGTCGTCGGAGCTACTCCAATAAGGGAAATTTGCCAGTTTCATGAGTCTCTGCATGGGATAACTTGTAAATTGGAGTGCCTACTTCTGCTAGATGACGTTGAGGTTCCTGATGGACTAGTTGATACAACATCTGTTCGCATTGTGCGGGTGAGCCCAACTGTGATGAAAAAGCTTTCTGGCATGCAATCAGTAGAATCTATTGATGCAATTGCCCTCATGAGAATACCTGCCAGTTTTTGTAGTGTAGATGGCAATGAAAAAGAAGTAGATTTTAAAAGATGTTTTCCATCTCCACATCGAATATTAGTCCTTGAGGGAATTCAGGTATTCTTTCATTTGGAGTTGAACGAAGTCTTGTGA

Coding sequence (CDS)

ATGCAATGCTCCTGCGTTTCCTGGTCCTCAACTCTGAAACTCGGACCTTCCTTTCCCAAATCGAAGCTATCATCAATTAACCAAGCAGAGGCCATCGATTTTGCTGGAAGAATTTCTCTTCCTTCTCATGTGAAAGCCATCACCAGCACCTCCAACCCCTTCGTTAAGCACTGCGTCAAACTTCGCTTCAGTTCTTCTTATCGCCACTTCTATGGCTCCGTTCTTGTCGTCGGAGCTACTCCAATAAGGGAAATTTGCCAGTTTCATGAGTCTCTGCATGGGATAACTTGTAAATTGGAGTGCCTACTTCTGCTAGATGACGTTGAGGTTCCTGATGGACTAGTTGATACAACATCTGTTCGCATTGTGCGGGTGAGCCCAACTGTGATGAAAAAGCTTTCTGGCATGCAATCAGTAGAATCTATTGATGCAATTGCCCTCATGAGAATACCTGCCAGTTTTTGTAGTGTAGATGGCAATGAAAAAGAAGTAGATTTTAAAAGATGTTTTCCATCTCCACATCGAATATTAGTCCTTGAGGGAATTCAGGTATTCTTTCATTTGGAGTTGAACGAAGTCTTGTGA

Protein sequence

MQCSCVSWSSTLKLGPSFPKSKLSSINQAEAIDFAGRISLPSHVKAITSTSNPFVKHCVKLRFSSSYRHFYGSVLVVGATPIREICQFHESLHGITCKLECLLLLDDVEVPDGLVDTTSVRIVRVSPTVMKKLSGMQSVESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLEGIQVFFHLELNEVL

Homology

[Close]

BLAST of Cla005720 vs. TrEMBL
Match: A0A0A0L5K1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115080 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.3e-82
Identity = 158/183 (86.34%), Postives = 167/183 (91.26%), Query Frame = 1


Query: 1   MQCSCVSWSSTLKLGPSFPKSKLSSINQAEAIDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+SWSS  KL PSFPKSKLSSIN AEAIDF GRI LPSHVKAITS SNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLAPSFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFYGSVLVVGATPIREICQFHESLHGITCKLECLLLLDDVEVPDGLVDTTSV 120
           LRFSSSYRHF+GSV+VVGATPIREIC+F ESLHG+TC LECLLLLD+VEVP+GLV+ T V
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLT-V 120

Query: 121 RIVRVSPTVMKKLSGMQSVESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLE 180
           RIVRVS  VMKKLSG+QS ESIDAIALMRIP SFCSVDGNEKEVDFKR FPSPHRILVLE
Sbjct: 121 RIVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLE 180

Query: 181 GIQ 184
           GIQ
Sbjct: 181 GIQ 182

[Close]

BLAST of Cla005720 vs. TrEMBL
Match: B9T2B4_RICCO (RNA binding protein, putative OS=Ricinus communis GN=RCOM_0410040 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 105/193 (54.40%), Postives = 136/193 (70.47%), Query Frame = 1


Query: 1   MQCSCVSWSSTLKLGP-----SFPKSKLSSINQAEA---IDFAG--RISLPSHVKAITST 60
           MQ +  SW  T+   P     S P+   +S NQ +    ID +   R  LP+H+K+ITST
Sbjct: 1   MQSTYASWVPTVSPSPLNLTNSKPRLSNTSPNQTQRNGDIDNSAEVRFPLPTHIKSITST 60

Query: 61  SNPFVKHCVKLRFSSSYRHFYGSVLVVGATPIREICQFHESLHGITCKLECLLLLDDVEV 120
           SNPF+KHCVKLR SS YRH +GS LVVG TPIREIC+F +SL   T ++ECL+L D  +V
Sbjct: 61  SNPFIKHCVKLRQSSPYRHAHGSALVVGTTPIREICKFQKSLKEETVEMECLILPDKAKV 120

Query: 121 PDGLVDTTSVRIVRVSPTVMKKLSGMQSVESIDAIALMRIPASFCSVDGNEKEVDFKRCF 180
           P+GL D++S R +RVS  VMK+LS +QS ESI+AIALM+ P S+  V  ++K+ DF++ F
Sbjct: 121 PEGL-DSSSTRTLRVSALVMKRLSQLQSTESIEAIALMKFPTSYFVVGDHQKDADFRKWF 180

Query: 181 PSPHRILVLEGIQ 184
           PSPHRILVLEGIQ
Sbjct: 181 PSPHRILVLEGIQ 192

[Close]

BLAST of Cla005720 vs. TrEMBL
Match: M5VZY4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008148mg PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 8.5e-45
Identity = 103/174 (59.20%), Postives = 126/174 (72.41%), Query Frame = 1


Query: 10  STLKLGPSFPKSKLSSINQAEAIDFAGRISLPSHVKAITSTSNPFVKHCVKLRFSSSYRH 69
           S L +GPS    ++ +  Q+   D+  ++ LPSHV +ITSTSNPFVKHC KLR SSSYRH
Sbjct: 24  SELSVGPS----QIHTQRQSNFEDYDVKLPLPSHVNSITSTSNPFVKHCHKLRQSSSYRH 83

Query: 70  FYGSVLVVGATPIREICQFHESLHGITCKLECLLLLDDVEVPDGLVDTTSVRIVRVSPTV 129
            +GS LVVGATPIREI +F  S    T  ++CLLLL+  EVP+  +D  SVRIV VS  V
Sbjct: 84  SHGSALVVGATPIREIYRFQRSSQEKTVIIDCLLLLEKAEVPE-WIDGFSVRIVEVSSVV 143

Query: 130 MKKLSGMQSVESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLEGIQ 184
           MKKLSGMQS ESI+AIALMR+P SF  +D  EKEV+ K  FPS HR+LVL+G+Q
Sbjct: 144 MKKLSGMQSTESIEAIALMRMPTSFSDIDSEEKEVNCKTWFPSLHRVLVLDGVQ 192

[Close]

BLAST of Cla005720 vs. TrEMBL
Match: V4SKU5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025907mg PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.9e-44
Identity = 101/159 (63.52%), Postives = 119/159 (74.84%), Query Frame = 1


Query: 25  SINQAEAIDFAGRISLPSHVKAITSTSNPFVKHCVKLRFSSSYRHFYGSVLVVGATPIRE 84
           +IN  +  D   + +LP HVK ITSTSNPFVKHC+KLR SSSYRH +GS LVVG TPIRE
Sbjct: 60  NININDDEDDGRKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIRE 119

Query: 85  ICQFHESLHGITCKLECLLLLDDVEVPDGLVDTTSVRIVRVSPTVMKKLSGMQSVESIDA 144
           I  F+ SL   T +++CLLLLD VEVP+GL D  S   VRVS  VMKKLSG+QS ESI+A
Sbjct: 120 IYNFNRSLQERTVRMDCLLLLDKVEVPEGL-DNISTHTVRVSSVVMKKLSGVQSSESIEA 179

Query: 145 IALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLEGIQ 184
           IALM+IP S  S+D N+KE D +  FPS HRILVL+GIQ
Sbjct: 180 IALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQ 217

[Close]

BLAST of Cla005720 vs. TrEMBL
Match: F6HWY1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1664g00010 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.5e-44
Identity = 104/184 (56.52%), Postives = 129/184 (70.11%), Query Frame = 1


Query: 1   MQCSCVSWSSTLKLGPSFPKSKLSSINQAEAIDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCS   W+S++     F     SS +  +       + LPSHVK+ITS SNPFVKHC K
Sbjct: 1   MQCSNTYWASSVHPPGRFFTQ--SSHHNEDTSCPVVTLPLPSHVKSITSPSNPFVKHCFK 60

Query: 61  LRFSSSYRHFYGSVLVVGATPIREICQFHESLHGITCKLECLLLLDDVEVPDGLVDTTSV 120
           LR SSSYR+ +GS LVVG TPIREI +F +S    T +++CLL+LD  E+P+GL D  SV
Sbjct: 61  LRHSSSYRYSHGSALVVGTTPIREIYKFQQSTQERTVEMDCLLILDKAEIPEGL-DVFSV 120

Query: 121 RIVRVSPTVMKKLSGMQSVESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLE 180
           R+VRVS  VMKKLSG+QS ES++AIALMRIP SF SV+ +  E D +R F SPHRILVL+
Sbjct: 121 RLVRVSSMVMKKLSGLQSTESVEAIALMRIPTSFFSVNDDTYEKDCRRWFQSPHRILVLD 180

Query: 181 GIQV 185
            IQV
Sbjct: 181 RIQV 181

[Close]

BLAST of Cla005720 vs. NCBI nr
Match: gi|778676548|ref|XP_011650605.1| (PREDICTED: rRNA methyltransferase 3, mitochondrial [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 3.3e-82
Identity = 158/183 (86.34%), Postives = 167/183 (91.26%), Query Frame = 1


Query: 1   MQCSCVSWSSTLKLGPSFPKSKLSSINQAEAIDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+SWSS  KL PSFPKSKLSSIN AEAIDF GRI LPSHVKAITS SNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLAPSFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFYGSVLVVGATPIREICQFHESLHGITCKLECLLLLDDVEVPDGLVDTTSV 120
           LRFSSSYRHF+GSV+VVGATPIREIC+F ESLHG+TC LECLLLLD+VEVP+GLV+ T V
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLT-V 120

Query: 121 RIVRVSPTVMKKLSGMQSVESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLE 180
           RIVRVS  VMKKLSG+QS ESIDAIALMRIP SFCSVDGNEKEVDFKR FPSPHRILVLE
Sbjct: 121 RIVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLE 180

Query: 181 GIQ 184
           GIQ
Sbjct: 181 GIQ 182

[Close]

BLAST of Cla005720 vs. NCBI nr
Match: gi|700201186|gb|KGN56319.1| (hypothetical protein Csa_3G115080 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 3.3e-82
Identity = 158/183 (86.34%), Postives = 167/183 (91.26%), Query Frame = 1


Query: 1   MQCSCVSWSSTLKLGPSFPKSKLSSINQAEAIDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+SWSS  KL PSFPKSKLSSIN AEAIDF GRI LPSHVKAITS SNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLAPSFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFYGSVLVVGATPIREICQFHESLHGITCKLECLLLLDDVEVPDGLVDTTSV 120
           LRFSSSYRHF+GSV+VVGATPIREIC+F ESLHG+TC LECLLLLD+VEVP+GLV+ T V
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLT-V 120

Query: 121 RIVRVSPTVMKKLSGMQSVESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLE 180
           RIVRVS  VMKKLSG+QS ESIDAIALMRIP SFCSVDGNEKEVDFKR FPSPHRILVLE
Sbjct: 121 RIVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLE 180

Query: 181 GIQ 184
           GIQ
Sbjct: 181 GIQ 182

[Close]

BLAST of Cla005720 vs. NCBI nr
Match: gi|659098507|ref|XP_008450171.1| (PREDICTED: RNA methyltransferase-like protein 1 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 305.8 bits (782), Expect = 5.3e-80
Identity = 157/183 (85.79%), Postives = 166/183 (90.71%), Query Frame = 1


Query: 1   MQCSCVSWSSTLKLGPSFPKSKLSSINQAEAIDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+SWSS  KLGPSF KSKLSSINQAEAIDF GRISLPSHVKAI+S SNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLGPSFHKSKLSSINQAEAIDFTGRISLPSHVKAISSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFYGSVLVVGATPIREICQFHESLHGITCKLECLLLLDDVEVPDGLVDTTSV 120
           LRFSSSYRHF+GSV+VVGATPIREIC+F ESLHGITC LE LLLLD+VEVP+GLV+ T V
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGITCTLEYLLLLDEVEVPEGLVNLT-V 120

Query: 121 RIVRVSPTVMKKLSGMQSVESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLE 180
           RIVRVS  VMKKLSG+QS ESIDAIALMRIP SFCSVDGNEK VDFKR FPSPHRILVLE
Sbjct: 121 RIVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKVVDFKRWFPSPHRILVLE 180

Query: 181 GIQ 184
            IQ
Sbjct: 181 RIQ 182

[Close]

BLAST of Cla005720 vs. NCBI nr
Match: gi|659098505|ref|XP_008450170.1| (PREDICTED: RNA methyltransferase-like protein 1 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 300.4 bits (768), Expect = 2.2e-78
Identity = 157/186 (84.41%), Postives = 166/186 (89.25%), Query Frame = 1


Query: 1   MQCSCVSWSSTLKLGPSFPKSKLSSINQAEAIDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+SWSS  KLGPSF KSKLSSINQAEAIDF GRISLPSHVKAI+S SNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLGPSFHKSKLSSINQAEAIDFTGRISLPSHVKAISSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFYGSVLVVGATPI---REICQFHESLHGITCKLECLLLLDDVEVPDGLVDT 120
           LRFSSSYRHF+GSV+VVGATPI   REIC+F ESLHGITC LE LLLLD+VEVP+GLV+ 
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPISLYREICKFQESLHGITCTLEYLLLLDEVEVPEGLVNL 120

Query: 121 TSVRIVRVSPTVMKKLSGMQSVESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRIL 180
           T VRIVRVS  VMKKLSG+QS ESIDAIALMRIP SFCSVDGNEK VDFKR FPSPHRIL
Sbjct: 121 T-VRIVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKVVDFKRWFPSPHRIL 180

Query: 181 VLEGIQ 184
           VLE IQ
Sbjct: 181 VLERIQ 185

[Close]

BLAST of Cla005720 vs. NCBI nr
Match: gi|255583237|ref|XP_002532383.1| (PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA [Ricinus communis])

HSP 1 Score: 191.4 bits (485), Expect = 1.4e-45
Identity = 105/193 (54.40%), Postives = 136/193 (70.47%), Query Frame = 1


Query: 1   MQCSCVSWSSTLKLGP-----SFPKSKLSSINQAEA---IDFAG--RISLPSHVKAITST 60
           MQ +  SW  T+   P     S P+   +S NQ +    ID +   R  LP+H+K+ITST
Sbjct: 1   MQSTYASWVPTVSPSPLNLTNSKPRLSNTSPNQTQRNGDIDNSAEVRFPLPTHIKSITST 60

Query: 61  SNPFVKHCVKLRFSSSYRHFYGSVLVVGATPIREICQFHESLHGITCKLECLLLLDDVEV 120
           SNPF+KHCVKLR SS YRH +GS LVVG TPIREIC+F +SL   T ++ECL+L D  +V
Sbjct: 61  SNPFIKHCVKLRQSSPYRHAHGSALVVGTTPIREICKFQKSLKEETVEMECLILPDKAKV 120

Query: 121 PDGLVDTTSVRIVRVSPTVMKKLSGMQSVESIDAIALMRIPASFCSVDGNEKEVDFKRCF 180
           P+GL D++S R +RVS  VMK+LS +QS ESI+AIALM+ P S+  V  ++K+ DF++ F
Sbjct: 121 PEGL-DSSSTRTLRVSALVMKRLSQLQSTESIEAIALMKFPTSYFVVGDHQKDADFRKWF 180

Query: 181 PSPHRILVLEGIQ 184
           PSPHRILVLEGIQ
Sbjct: 181 PSPHRILVLEGIQ 192

The following BLAST results are available for this feature:

BLAST of Cla005720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5K1_CUCSA	2.3e-82	86.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115080 PE=4 SV=1	[more]
B9T2B4_RICCO	1.0e-45	54.40	RNA binding protein, putative OS=Ricinus communis GN=RCOM_0410040 PE=4 SV=1	[more]
M5VZY4_PRUPE	8.5e-45	59.20	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008148mg PE=4 SV=1	[more]
V4SKU5_9ROSI	1.9e-44	63.52	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025907mg PE=4 SV=1	[more]
F6HWY1_VITVI	5.5e-44	56.52	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1664g00010 PE=4 SV=...	[more]

BLAST of Cla005720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676548\|ref\|XP_011650605.1\|	3.3e-82	86.34	PREDICTED: rRNA methyltransferase 3, mitochondrial [Cucumis sativus]	[more]
gi\|700201186\|gb\|KGN56319.1\|	3.3e-82	86.34	hypothetical protein Csa_3G115080 [Cucumis sativus]	[more]
gi\|659098507\|ref\|XP_008450171.1\|	5.3e-80	85.79	PREDICTED: RNA methyltransferase-like protein 1 homolog isoform X2 [Cucumis melo...	[more]
gi\|659098505\|ref\|XP_008450170.1\|	2.2e-78	84.41	PREDICTED: RNA methyltransferase-like protein 1 homolog isoform X1 [Cucumis melo...	[more]
gi\|255583237\|ref\|XP_002532383.1\|	1.4e-45	54.40	PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006396	RNA processing
biological_process	GO:0009451	RNA modification
biological_process	GO:0032259	methylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008173	RNA methyltransferase activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005720	Cla005720.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla005720	Cla97C10G191720	Watermelon (97103) v2	wmwmbB055
Cla005720	Csa3G115080	Cucumber (Chinese Long) v2	cuwmB206
Cla005720	MELO3C014951	Melon (DHL92) v3.5.1	mewmB451
Cla005720	ClCG10G008240	Watermelon (Charleston Gray)	wcgwmB055
Cla005720	CSPI03G06910	Wild cucumber (PI 183967)	cpiwmB206
Cla005720	Cucsa.260180	Cucumber (Gy14) v1	cgywmB473
Cla005720	Lsi05G007970	Bottle gourd (USVL1VR-Ls)	lsiwmB352
Cla005720	CsGy3G007020	Cucumber (Gy14) v2	cgybwmB194
Cla005720	MELO3C014951.2	Melon (DHL92) v3.6.1	medwmB441
Cla005720	CsaV3_3G006990	Cucumber (Chinese Long) v3	cucwmB215
Cla005720	Bhi11G000754	Wax gourd	wgowmB017

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None