Cla005691 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005691
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Short-chain dehydrogenase/reductase SDR (AHRD V1 ***- B3QWD6_CHLT3); contains Interpro domain(s) IPR002198 Short-chain dehydrogenase/reductase SDR
Location	Chr10 : 3649143 .. 3649541 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGGTCCGGCAGCCTTCTCCTCCCCTCGAGCCATGGAACGATTTACAGGGGAAAGTGGTGATGGTGACCGGAGCCTCGTCAGGGCTCGGCCGCGAGTTCTGTGTCGATCTCGCCGCCGCCGGTTGCAGGATTGTAGCTGCCGCACGGCGTACGGATCGACTGGAATCGCTTTGTGAAGAAATTAATCGGCTGGAATTGGGCGGCTCTTCTTCTTCGATTGAGACGGGGAGCCGCCGGGCTGTGGCGGTGGAGCTTGATATCAGCGGCGATGGGAAGAGTATTGAGAAATCCGTTAGAAAAGCATGGGATTCCTTCGGCTTCATTGATGCTTTGGTTAACAATGCTGGTTTGAGAGGTCGTTTCTTCTTACTTCTTTCGAGATCAAGGTTTTAA

mRNA sequence

ATGGCGGCGGTCCGGCAGCCTTCTCCTCCCCTCGAGCCATGGAACGATTTACAGGGGAAAGTGGTGATGGTGACCGGAGCCTCGTCAGGGCTCGGCCGCGAGTTCTGTGTCGATCTCGCCGCCGCCGGTTGCAGGATTGTAGCTGCCGCACGGCGTACGGATCGACTGGAATCGCTTTGTGAAGAAATTAATCGGCTGGAATTGGGCGGCTCTTCTTCTTCGATTGAGACGGGGAGCCGCCGGGCTGTGGCGGTGGAGCTTGATATCAGCGGCGATGGGAAGAGTATTGAGAAATCCGTTAGAAAAGCATGGGATTCCTTCGGCTTCATTGATGCTTTGGTTAACAATGCTGGTTTGAGAGGTCGTTTCTTCTTACTTCTTTCGAGATCAAGGTTTTAA

Coding sequence (CDS)

ATGGCGGCGGTCCGGCAGCCTTCTCCTCCCCTCGAGCCATGGAACGATTTACAGGGGAAAGTGGTGATGGTGACCGGAGCCTCGTCAGGGCTCGGCCGCGAGTTCTGTGTCGATCTCGCCGCCGCCGGTTGCAGGATTGTAGCTGCCGCACGGCGTACGGATCGACTGGAATCGCTTTGTGAAGAAATTAATCGGCTGGAATTGGGCGGCTCTTCTTCTTCGATTGAGACGGGGAGCCGCCGGGCTGTGGCGGTGGAGCTTGATATCAGCGGCGATGGGAAGAGTATTGAGAAATCCGTTAGAAAAGCATGGGATTCCTTCGGCTTCATTGATGCTTTGGTTAACAATGCTGGTTTGAGAGGTCGTTTCTTCTTACTTCTTTCGAGATCAAGGTTTTAA

Protein sequence

MAAVRQPSPPLEPWNDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCEEINRLELGGSSSSIETGSRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDALVNNAGLRGRFFLLLSRSRF

Homology

[Close]

BLAST of Cla005691 vs. Swiss-Prot
Match: DHRS7_ANOGA (Dehydrogenase/reductase SDR family protein 7-like OS=Anopheles gambiae GN=AGAP005532 PE=3 SV=3)

HSP 1 Score: 64.7 bits (156), Expect = 8.7e-10
Identity = 43/106 (40.57%), Postives = 57/106 (53.77%), Query Frame = 1


Query: 17  LQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCEEINRLELGGSSSSIE 76
           L GKVV++TGASSGLG         AGC++V AARR D LE + +++  LEL  +     
Sbjct: 46  LNGKVVLITGASSGLGEALAHSFFLAGCKVVLAARRKDELERVRKDL--LELHAT----- 105

Query: 77  TGSRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDALVNNAGLRGR 123
             +   + + LD+S D  SI   V+   +  G ID LVNN G+  R
Sbjct: 106 VPTHPPIILPLDLS-DLNSIGGKVQSVLEIHGAIDILVNNGGISVR 143

[Close]

BLAST of Cla005691 vs. Swiss-Prot
Match: Y1627_STAS1 (Uncharacterized oxidoreductase SSP1627 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1627 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-09
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 1


Query: 15  NDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCEEINRLELGGSSSS 74
           N+++ KVV++TGASSG+G E    L+  G ++V  ARR DRLE + +++     G  S S
Sbjct: 2   NNVKDKVVVITGASSGIGEETVNLLSENGAKLVLGARRLDRLEKIQQKV-----GHDSVS 61

Query: 75  IETGSRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDALVNNAGLRGRFFL 126
           I+         + D++   + +   +  A++ FG ID L+NNAGL  + FL
Sbjct: 62  IK---------KTDVTKPDE-VNALIETAYNDFGRIDVLINNAGLMPQSFL 97

[Close]

BLAST of Cla005691 vs. Swiss-Prot
Match: SDR1_AEDAE (Farnesol dehydrogenase OS=Aedes aegypti GN=SDR-1 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 9.6e-09
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 1


Query: 19  GKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCEEINRLELGGSSSSIETG 78
           GKV +VTGASSG+G     DLA AG  +V  ARR +R+E+L            ++  E+ 
Sbjct: 6   GKVAVVTGASSGIGAAITTDLAKAGMVVVGLARRVERVEAL-----------KANLPESA 65

Query: 79  SRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDALVNNAGL 120
             R  AV+ D+S + + I +  +     FG +D LVNNAG+
Sbjct: 66  KPRLHAVKCDVSKE-EDITQVFKWVEKKFGGVDVLVNNAGI 94

[Close]

BLAST of Cla005691 vs. Swiss-Prot
Match: DHRS7_DROME (Dehydrogenase/reductase SDR family protein 7-like OS=Drosophila melanogaster GN=CG7601 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-08
Identity = 37/108 (34.26%), Postives = 56/108 (51.85%), Query Frame = 1


Query: 15  NDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCEEINRLELGGSSSS 74
           N L GKVV++TGASSGLG         AGCR++ AARRT  LE + +++  L++  +   
Sbjct: 49  NQLPGKVVLITGASSGLGESLAHVFYRAGCRVILAARRTQELERVKKDLLALDVDPAYP- 108

Query: 75  IETGSRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDALVNNAGLRGR 123
                     + LD++ +  SI + V +    +  +D L+NN G+  R
Sbjct: 109 -------PTVLPLDLA-ELNSIPEFVTRVLAVYNQVDILINNGGISVR 147

[Close]

BLAST of Cla005691 vs. Swiss-Prot
Match: HSD2_ARATH (11-beta-hydroxysteroid dehydrogenase-like 2 OS=Arabidopsis thaliana GN=HSD2 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-08
Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 1


Query: 14  WNDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCEEINRLELGGSSS 73
           + ++ GKVV++TGASSG+G     + A  G ++   ARR DRLE + E           +
Sbjct: 41  FENVTGKVVLITGASSGIGEHVAYEYAKKGAKLALVARRKDRLEIVAE-----------T 100

Query: 74  SIETGSRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDALVNNAGL 120
           S + GS   + +  D+S + +  +K + +    FG +D L+NNAG+
Sbjct: 101 SRQLGSGDVIIIPGDVS-NVEDCKKFIDETIHHFGKLDHLINNAGV 134

[Close]

BLAST of Cla005691 vs. TrEMBL
Match: A0A0A0L3H5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G427270 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.3e-40
Identity = 90/118 (76.27%), Postives = 101/118 (85.59%), Query Frame = 1


Query: 5   RQPSPP-LEPWNDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCEEI 64
           RQ SP  LEPWN L GKVVMVTGASSGLGREFC+DLA AGC+++AAARR DRL+SLC+EI
Sbjct: 4   RQSSPTHLEPWNSLHGKVVMVTGASSGLGREFCLDLAKAGCKVIAAARRIDRLQSLCDEI 63

Query: 65  NRLELGGSSSSIETGSRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDALVNNAGLRG 122
           NRL L  SSSS+ T +  A+AVELDIS DGKSIEKSV+ AW+SFGFIDALVNNAG RG
Sbjct: 64  NRLNL-SSSSSLPTPT--AIAVELDISADGKSIEKSVKNAWESFGFIDALVNNAGFRG 118

[Close]

BLAST of Cla005691 vs. TrEMBL
Match: A0A0A0L258_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G427280 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-39
Identity = 91/128 (71.09%), Postives = 103/128 (80.47%), Query Frame = 1


Query: 3   AVRQPSP-PLEPWNDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCE 62
           A++Q SP  LEPWNDL GKVVMVTGASSGLGREFC+DLA AGC+I+AAARRT RL+SLC+
Sbjct: 2   AIQQHSPLKLEPWNDLNGKVVMVTGASSGLGREFCLDLARAGCKIIAAARRTSRLQSLCD 61

Query: 63  EINRLELGGSSSSI-----ETG---SRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDAL 122
           EIN L+   SSS++      TG   SR AVAVELD+ G GKSIE+SV KAWD FGFID L
Sbjct: 62  EINELDFSVSSSALASPISPTGAVESRPAVAVELDVCGHGKSIEESVTKAWDYFGFIDTL 121

[Close]

BLAST of Cla005691 vs. TrEMBL
Match: A0A0A0LCR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824880 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38
Identity = 84/119 (70.59%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 3   AVRQPSPPLEPWNDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCEE 62
           A+++ SP LEPWNDL GKVVMVTGASSGLGREFC+DLA AGC+IVA ARRTDRL+SLC+E
Sbjct: 2   ALQRDSPQLEPWNDLNGKVVMVTGASSGLGREFCLDLARAGCKIVAVARRTDRLQSLCQE 61

Query: 63  INRLELGGSSSSIETGSRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDALVNNAGLRG 122
           IN      S S+  T + RAVAVELD+  D   I+ +VRKAWDSFGFIDALVNN GLRG
Sbjct: 62  IN--SSSSSGSTFPTATPRAVAVELDLKADSTIIKDAVRKAWDSFGFIDALVNNGGLRG 118

[Close]

BLAST of Cla005691 vs. TrEMBL
Match: A0A0A0L3H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G429300 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38
Identity = 88/127 (69.29%), Postives = 103/127 (81.10%), Query Frame = 1


Query: 3   AVRQPSP-PLEPWNDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCE 62
           A+++ SP  LEPWNDL GKVVMVTGAS+GLGREFC+DLA AGC+I+AAARRT RL+SLC+
Sbjct: 2   AIQEHSPLKLEPWNDLNGKVVMVTGASAGLGREFCLDLARAGCKIIAAARRTSRLQSLCD 61

Query: 63  EINRLELGGSSSSI-----ETG---SRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDAL 121
           EIN L+    SS++      TG   SRRAVAVELD+ G+GKSIE+SVRKAWD FGFID L
Sbjct: 62  EINELDFSVLSSALASPISPTGAVESRRAVAVELDVCGNGKSIEESVRKAWDYFGFIDTL 121

[Close]

BLAST of Cla005691 vs. TrEMBL
Match: M5W2W1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009414mg PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.6e-37
Identity = 85/122 (69.67%), Postives = 96/122 (78.69%), Query Frame = 1


Query: 6   QPSPPLEPWNDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCEEINR 65
           Q +  LEPW  L GKVVMVTGASSGLGRE C+DLA AGCRIVAAARR DRL+S+C+EIN+
Sbjct: 4   QVADHLEPWRHLHGKVVMVTGASSGLGRELCLDLAKAGCRIVAAARRIDRLQSVCDEINQ 63

Query: 66  LELGGSSSSIET------GSRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDALVNNAGL 122
           L +   SSS  +      GS RAVAVELDIS DG +IEKSV KAWD+FG IDALVNNAG+
Sbjct: 64  LPVTAPSSSSSSSSVNGPGSSRAVAVELDISADGPAIEKSVNKAWDAFGRIDALVNNAGV 123

[Close]

BLAST of Cla005691 vs. NCBI nr
Match: gi|449453159|ref|XP_004144326.1| (PREDICTED: L-xylulose reductase-like [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 6.2e-40
Identity = 90/118 (76.27%), Postives = 101/118 (85.59%), Query Frame = 1


Query: 5   RQPSPP-LEPWNDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCEEI 64
           RQ SP  LEPWN L GKVVMVTGASSGLGREFC+DLA AGC+++AAARR DRL+SLC+EI
Sbjct: 4   RQSSPTHLEPWNSLHGKVVMVTGASSGLGREFCLDLAKAGCKVIAAARRIDRLQSLCDEI 63

Query: 65  NRLELGGSSSSIETGSRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDALVNNAGLRG 122
           NRL L  SSSS+ T +  A+AVELDIS DGKSIEKSV+ AW+SFGFIDALVNNAG RG
Sbjct: 64  NRLNL-SSSSSLPTPT--AIAVELDISADGKSIEKSVKNAWESFGFIDALVNNAGFRG 118

[Close]

BLAST of Cla005691 vs. NCBI nr
Match: gi|778697737|ref|XP_011654387.1| (PREDICTED: L-xylulose reductase-like [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 1.4e-39
Identity = 91/129 (70.54%), Postives = 104/129 (80.62%), Query Frame = 1


Query: 3   AVRQPSP-PLEPWNDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCE 62
           A++Q SP  LEPWNDL GKVVMVTGASSGLGREFC+DLA AGC+I+AAARRT RL+SLC+
Sbjct: 2   AIQQHSPLKLEPWNDLNGKVVMVTGASSGLGREFCLDLARAGCKIIAAARRTSRLQSLCD 61

Query: 63  EINRLELGGSSSSI-----ETG---SRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDAL 122
           EIN L+   SSS++      TG   SR AVAVELD+ G GKSIE+SV KAWD FGFID L
Sbjct: 62  EINELDFSVSSSALASPISPTGAVESRPAVAVELDVCGHGKSIEESVTKAWDYFGFIDTL 121

[Close]

BLAST of Cla005691 vs. NCBI nr
Match: gi|778697741|ref|XP_011654389.1| (PREDICTED: dehydrogenase/reductase SDR family protein 7-like [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-39
Identity = 89/129 (68.99%), Postives = 105/129 (81.40%), Query Frame = 1


Query: 3   AVRQPSP-PLEPWNDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCE 62
           A+++ SP  LEPWNDL GKVVMVTGAS+GLGREFC+DLA AGC+I+AAARRT RL+SLC+
Sbjct: 2   AIQEHSPLKLEPWNDLNGKVVMVTGASAGLGREFCLDLARAGCKIIAAARRTSRLQSLCD 61

Query: 63  EINRLELGGSSSSI-----ETG---SRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDAL 122
           EIN L+    SS++      TG   SRRAVAVELD+ G+GKSIE+SVRKAWD FGFID L
Sbjct: 62  EINELDFSVLSSALASPISPTGAVESRRAVAVELDVCGNGKSIEESVRKAWDYFGFIDTL 121

[Close]

BLAST of Cla005691 vs. NCBI nr
Match: gi|645270925|ref|XP_008240678.1| (PREDICTED: 3-oxoacyl-[acyl-carrier-protein])

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 90/128 (70.31%), Postives = 101/128 (78.91%), Query Frame = 1


Query: 6   QPSPPLEPWNDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCEEINR 65
           Q +  LEPW DL GKVVMVTGASSGLGREFC+DLA AGCRIVAAARR DRL+S+C+EIN+
Sbjct: 4   QVADHLEPWRDLHGKVVMVTGASSGLGREFCLDLAKAGCRIVAAARRIDRLQSVCDEINQ 63

Query: 66  LELGGSSSSIET---GSRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDALVNNAGLRGR 125
           L +  SSSS      GS RAVAVELDIS DG +IEKSV KAWD+FG IDALVNNAG+RG 
Sbjct: 64  LTITASSSSSSVNGPGSSRAVAVELDISADGPAIEKSVNKAWDAFGRIDALVNNAGVRGN 123

Query: 126 FFLLLSRS 131
              +L  S
Sbjct: 124 VSSVLELS 131

[Close]

BLAST of Cla005691 vs. NCBI nr
Match: gi|700199534|gb|KGN54692.1| (hypothetical protein Csa_4G427280 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 91/128 (71.09%), Postives = 103/128 (80.47%), Query Frame = 1


Query: 3   AVRQPSP-PLEPWNDLQGKVVMVTGASSGLGREFCVDLAAAGCRIVAAARRTDRLESLCE 62
           A++Q SP  LEPWNDL GKVVMVTGASSGLGREFC+DLA AGC+I+AAARRT RL+SLC+
Sbjct: 2   AIQQHSPLKLEPWNDLNGKVVMVTGASSGLGREFCLDLARAGCKIIAAARRTSRLQSLCD 61

Query: 63  EINRLELGGSSSSI-----ETG---SRRAVAVELDISGDGKSIEKSVRKAWDSFGFIDAL 122
           EIN L+   SSS++      TG   SR AVAVELD+ G GKSIE+SV KAWD FGFID L
Sbjct: 62  EINELDFSVSSSALASPISPTGAVESRPAVAVELDVCGHGKSIEESVTKAWDYFGFIDTL 121

The following BLAST results are available for this feature:

BLAST of Cla005691 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DHRS7_ANOGA	8.7e-10	40.57	Dehydrogenase/reductase SDR family protein 7-like OS=Anopheles gambiae GN=AGAP00...	[more]
Y1627_STAS1	3.3e-09	36.04	Uncharacterized oxidoreductase SSP1627 OS=Staphylococcus saprophyticus subsp. sa...	[more]
SDR1_AEDAE	9.6e-09	38.61	Farnesol dehydrogenase OS=Aedes aegypti GN=SDR-1 PE=1 SV=2	[more]
DHRS7_DROME	2.1e-08	34.26	Dehydrogenase/reductase SDR family protein 7-like OS=Drosophila melanogaster GN=...	[more]
HSD2_ARATH	3.6e-08	33.02	11-beta-hydroxysteroid dehydrogenase-like 2 OS=Arabidopsis thaliana GN=HSD2 PE=2...	[more]

BLAST of Cla005691 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3H5_CUCSA	4.3e-40	76.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G427270 PE=3 SV=1	[more]
A0A0A0L258_CUCSA	1.6e-39	71.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G427280 PE=3 SV=1	[more]
A0A0A0LCR1_CUCSA	1.1e-38	70.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824880 PE=3 SV=1	[more]
A0A0A0L3H9_CUCSA	1.1e-38	69.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G429300 PE=4 SV=1	[more]
M5W2W1_PRUPE	7.6e-37	69.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009414mg PE=3 SV=1	[more]

BLAST of Cla005691 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453159\|ref\|XP_004144326.1\|	6.2e-40	76.27	PREDICTED: L-xylulose reductase-like [Cucumis sativus]	[more]
gi\|778697737\|ref\|XP_011654387.1\|	1.4e-39	70.54	PREDICTED: L-xylulose reductase-like [Cucumis sativus]	[more]
gi\|778697741\|ref\|XP_011654389.1\|	1.8e-39	68.99	PREDICTED: dehydrogenase/reductase SDR family protein 7-like [Cucumis sativus]	[more]
gi\|645270925\|ref\|XP_008240678.1\|	2.3e-39	70.31	PREDICTED: 3-oxoacyl-[acyl-carrier-protein]	[more]
gi\|700199534\|gb\|KGN54692.1\|	2.3e-39	71.09	hypothetical protein Csa_4G427280 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0042967	acyl-carrier-protein biosynthetic process
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005835	fatty acid synthase complex
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004316	3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005691	Cla005691.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 108..119 score: 4.2E-8coord: 21..38 score: 4.
IPR002347	Short-chain dehydrogenase/reductase SDR	PANTHER	PTHR24322	FAMILY NOT NAMED	coord: 24..121 score: 2.0
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 20..121 score: 3.7
IPR016040	NAD(P)-binding domain	GENE3D	G3DSA:3.40.50.720		coord: 13..120 score: 4.4
IPR016040	NAD(P)-binding domain	unknown	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 14..121 score: 3.31
None	No IPR available	PANTHER	PTHR24322:SF364	SUBFAMILY NOT NAMED	coord: 24..121 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla005691	ClCG10G003170	Watermelon (Charleston Gray)	wcgwmB053
Cla005691	BhiUN285G33	Wax gourd	wgowmB163

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005691	Cucumber (Gy14) v1	cgywmB547
Cla005691	Cucumber (Gy14) v1	cgywmB585
Cla005691	Cucurbita maxima (Rimu)	cmawmB254
Cla005691	Cucurbita maxima (Rimu)	cmawmB301
Cla005691	Cucurbita maxima (Rimu)	cmawmB790
Cla005691	Cucurbita moschata (Rifu)	cmowmB245
Cla005691	Cucurbita moschata (Rifu)	cmowmB295
Cla005691	Cucurbita moschata (Rifu)	cmowmB784
Cla005691	Wild cucumber (PI 183967)	cpiwmB195
Cla005691	Wild cucumber (PI 183967)	cpiwmB381
Cla005691	Melon (DHL92) v3.5.1	mewmB006
Cla005691	Melon (DHL92) v3.5.1	mewmB452
Cla005691	Watermelon (Charleston Gray)	wcgwmB000
Cla005691	Watermelon (Charleston Gray)	wcgwmB119
Cla005691	Cucumber (Chinese Long) v2	cuwmB195
Cla005691	Cucumber (Chinese Long) v2	cuwmB375
Cla005691	Cucurbita pepo (Zucchini)	cpewmB169
Cla005691	Cucurbita pepo (Zucchini)	cpewmB211
Cla005691	Cucurbita pepo (Zucchini)	cpewmB828
Cla005691	Bottle gourd (USVL1VR-Ls)	lsiwmB008
Cla005691	Bottle gourd (USVL1VR-Ls)	lsiwmB428
Cla005691	Cucumber (Gy14) v2	cgybwmB184
Cla005691	Cucumber (Gy14) v2	cgybwmB348
Cla005691	Melon (DHL92) v3.6.1	medwmB004
Cla005691	Melon (DHL92) v3.6.1	medwmB433
Cla005691	Silver-seed gourd	carwmB0862
Cla005691	Silver-seed gourd	carwmB0865
Cla005691	Cucumber (Chinese Long) v3	cucwmB205
Cla005691	Cucumber (Chinese Long) v3	cucwmB398
Cla005691	Watermelon (97103) v2	wmwmbB050
Cla005691	Watermelon (97103) v2	wmwmbB053
Cla005691	Wax gourd	wgowmB057
Cla005691	Watermelon (97103) v1	wmwmB049