Cla005662 (gene) Watermelon (97103) v1

NameCla005662
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCortical cell-delineating protein (AHRD V1 **-- B6U436_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical
LocationChr10 : 3273278 .. 3273688 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCTAAAAGAACTTCAAATGCTGCCATCTTTCTTGTCCTCAACCTTGTGTTTTTTGCCTTTGTTAATGTATGCCACGCCTGTAACGATCCGAAGCCGAAGCCAAATCCAAAGCCTTACCCTAACCCTAACCCTACTCCTGTAGTCAAGAGCTGCCCTAGAGATGCCCTAAAGCTCGGCGTGTGCACAAAGCTATTGAACGGACCGGTTAGTGCACTTGTCGGGTCCTTGCCGAACACCCAATGCTGCTCACTGCTTGACGGGCTTATCGACCTCGAAGCCGCAGTGTGTCTTTGCACAGCCATCAAAGCCAATGTTCTTGGTATCAACATTAACATCCCCATTTCTTTGAGCTTGCTTGTCAATGTCTGTGGAAAGAAGGTTCCCTCTGAGTTCCAGTGTGCCTAA

mRNA sequence

ATGGATTCTAAAAGAACTTCAAATGCTGCCATCTTTCTTGTCCTCAACCTTGTGTTTTTTGCCTTTGTTAATGTATGCCACGCCTGTAACGATCCGAAGCCGAAGCCAAATCCAAAGCCTTACCCTAACCCTAACCCTACTCCTGTAGTCAAGAGCTGCCCTAGAGATGCCCTAAAGCTCGGCGTGTGCACAAAGCTATTGAACGGACCGGTTAGTGCACTTGTCGGGTCCTTGCCGAACACCCAATGCTGCTCACTGCTTGACGGGCTTATCGACCTCGAAGCCGCAGTGTGTCTTTGCACAGCCATCAAAGCCAATGTTCTTGGTATCAACATTAACATCCCCATTTCTTTGAGCTTGCTTGTCAATGTCTGTGGAAAGAAGGTTCCCTCTGAGTTCCAGTGTGCCTAA

Coding sequence (CDS)

ATGGATTCTAAAAGAACTTCAAATGCTGCCATCTTTCTTGTCCTCAACCTTGTGTTTTTTGCCTTTGTTAATGTATGCCACGCCTGTAACGATCCGAAGCCGAAGCCAAATCCAAAGCCTTACCCTAACCCTAACCCTACTCCTGTAGTCAAGAGCTGCCCTAGAGATGCCCTAAAGCTCGGCGTGTGCACAAAGCTATTGAACGGACCGGTTAGTGCACTTGTCGGGTCCTTGCCGAACACCCAATGCTGCTCACTGCTTGACGGGCTTATCGACCTCGAAGCCGCAGTGTGTCTTTGCACAGCCATCAAAGCCAATGTTCTTGGTATCAACATTAACATCCCCATTTCTTTGAGCTTGCTTGTCAATGTCTGTGGAAAGAAGGTTCCCTCTGAGTTCCAGTGTGCCTAA

Protein sequence

MDSKRTSNAAIFLVLNLVFFAFVNVCHACNDPKPKPNPKPYPNPNPTPVVKSCPRDALKLGVCTKLLNGPVSALVGSLPNTQCCSLLDGLIDLEAAVCLCTAIKANVLGININIPISLSLLVNVCGKKVPSEFQCA
BLAST of Cla005662 vs. Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.5e-41
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1

Query: 1   MDSKRTSNAAIFLVLNLVFFAFVNVCHACNDP-KPKPNPKPYPNPNPTPVVKSCPRDALK 60
           M SK +++ A+F  LN++FFA V+    C DP KPKP P P P P P P    CPRDALK
Sbjct: 1   MGSKNSASVALFFTLNILFFALVSSTEKCPDPYKPKPKPTPKPTPTPYPSAGKCPRDALK 60

Query: 61  LGVCTKLLNGPVSALVGSLPNTQCCSLLDGLIDLEAAVCLCTAIKANVLGININIPISLS 120
           LGVC  +LN   + ++GS P   CCSLL+GL++LEAAVCLCTAIKAN+LG N+N+PI+LS
Sbjct: 61  LGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALS 120

Query: 121 LLVNVCGKKVPSEFQC 136
           L++N CGK+VP+ F+C
Sbjct: 121 LVLNNCGKQVPNGFEC 136

BLAST of Cla005662 vs. Swiss-Prot
Match: ERLL1_ARATH (pEARLI1-like lipid transfer protein 1 OS=Arabidopsis thaliana GN=AZI1 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.6e-35
Identity = 77/162 (47.53%), Postives = 103/162 (63.58%), Query Frame = 1

Query: 1   MDSKRTSNAAIFLVLNLVFFAFVNVCHACN-----DPKPKPNPKP------------YPN 60
           M SK +++ A+F  LN++FF  + V   CN      PKP P+PKP             P+
Sbjct: 1   MASKNSASLALFFALNILFFT-LTVATNCNCKPSPKPKPVPSPKPKPVQCPPPPRPSVPS 60

Query: 61  PNPTPVV---------KSCPRDALKLGVCTKLLNGPVSALVGSLPNTQCCSLLDGLIDLE 120
           PNP PV           SCP DALKLGVC  +L+  ++  +G   + QCCSL+ GL+D++
Sbjct: 61  PNPRPVTPPRTPGSSGNSCPIDALKLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVD 120

Query: 121 AAVCLCTAIKANVLGININIPISLSLLVNVCGKKVPSEFQCA 137
           AA+CLCTA++ANVLGIN+N+PISLS+L+NVC +K+PS FQCA
Sbjct: 121 AAICLCTALRANVLGINLNVPISLSVLLNVCNRKLPSGFQCA 161

BLAST of Cla005662 vs. Swiss-Prot
Match: ERLI1_ARATH (Lipid transfer protein EARLI 1 OS=Arabidopsis thaliana GN=EARLI1 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.6e-33
Identity = 75/168 (44.64%), Postives = 97/168 (57.74%), Query Frame = 1

Query: 1   MDSKRTSNAAIFLVLNLVFFAFVNVCHA-CN---------DPKPKPNPKPYPNPNPTPVV 60
           M SK +++ A+F  LN++FF         CN          PKPKP P P P P P+P V
Sbjct: 1   MASKNSASIALFFALNIIFFTLTAATDCGCNPSPKHKPVPSPKPKPVPSPKPKPVPSPSV 60

Query: 61  KS----------------------CPRDALKLGVCTKLLNGPVSALVGSLPNTQCCSLLD 120
            S                      CP DAL+LGVC  +L+  ++  +G      CCSL+ 
Sbjct: 61  PSPSVPSPNPRPVTPPRTPGSSGNCPIDALRLGVCANVLSSLLNIQLGQPSAQPCCSLIQ 120

Query: 121 GLIDLEAAVCLCTAIKANVLGININIPISLSLLVNVCGKKVPSEFQCA 137
           GL+DL+AA+CLCTA++ANVLGIN+N+PISLS+L+NVC +KVPS FQCA
Sbjct: 121 GLVDLDAAICLCTALRANVLGINLNVPISLSVLLNVCNRKVPSGFQCA 168

BLAST of Cla005662 vs. Swiss-Prot
Match: ERLL2_ARATH (pEARLI1-like lipid transfer protein 2 OS=Arabidopsis thaliana GN=At4g12490 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.8e-33
Identity = 76/182 (41.76%), Postives = 103/182 (56.59%), Query Frame = 1

Query: 1   MDSKRTSNAAIFLVLNLVFFAFVNV----CHACNDPKPKPNPK-------------PY-- 60
           M SK +++ A+F  LN++FF         C+    P+P PNPK             PY  
Sbjct: 1   MASKNSASLALFFALNILFFTLTAGTNCRCNPSPKPRPLPNPKVPSPKVPTPSVPSPYVP 60

Query: 61  -------------------PNPNPTPVVK--------SCPRDALKLGVCTKLLNGPVSAL 120
                              P+PNPTPV+         +CP DAL+LGVC  +L+G ++  
Sbjct: 61  TPSVPSPSVPTPSVPSPSVPSPNPTPVIPPRTPGSSGNCPIDALRLGVCANVLSGLLNVQ 120

Query: 121 VGSLPNTQCCSLLDGLIDLEAAVCLCTAIKANVLGININIPISLSLLVNVCGKKVPSEFQ 137
           +G      CCSL+ GL+DL+AAVCLCTA++ANVLGIN+N+PISLS+L+NVC +++PS FQ
Sbjct: 121 LGQPSPQPCCSLIQGLVDLDAAVCLCTALRANVLGINLNVPISLSVLLNVCNRRLPSNFQ 180

BLAST of Cla005662 vs. Swiss-Prot
Match: ERLL3_ARATH (pEARLI1-like lipid transfer protein 3 OS=Arabidopsis thaliana GN=At4g12500 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.9e-32
Identity = 72/177 (40.68%), Postives = 99/177 (55.93%), Query Frame = 1

Query: 1   MDSKRTSNAAIFLVLNLVFFAFVNV--CHACNDPKPKPNPKP------------------ 60
           M SK +++ A+F  LN++FF       C     PKP+  P P                  
Sbjct: 1   MASKNSTSLALFFALNILFFTLTTATDCRCNLSPKPRTVPSPKVPSPKYPSPSIPSPSVP 60

Query: 61  -------------YPNPNPTPVVK--------SCPRDALKLGVCTKLLNGPVSALVGSLP 120
                         P+PNPTPV          +CP DAL+LGVC  +L+G ++  +G   
Sbjct: 61  TPSVPTPSVPTPSVPSPNPTPVTPPRTPGSSGNCPIDALRLGVCANVLSGLLNVQLGQPS 120

Query: 121 NTQCCSLLDGLIDLEAAVCLCTAIKANVLGININIPISLSLLVNVCGKKVPSEFQCA 137
              CCSL+ GL+DL+AA+CLCTA++ANVLGIN+N+PISLS+L+NVC +++PS+FQCA
Sbjct: 121 AQPCCSLIQGLVDLDAAICLCTALRANVLGINLNVPISLSVLLNVCNRRLPSDFQCA 177

BLAST of Cla005662 vs. NCBI nr
Match: gi|590676962|ref|XP_007039887.1| (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao])

HSP 1 Score: 192.2 bits (487), Expect = 5.9e-46
Identity = 91/136 (66.91%), Postives = 110/136 (80.88%), Query Frame = 1

Query: 1   MDSKRTSNAAIFLVLNLVFFAFVNVCHACNDPKPKPNPKPYPNPNPTPVVKSCPRDALKL 60
           MDSKR S+  + L +NL+FF  V+ C+ C  P+P PNP+P P+P PT   KSCPRDALKL
Sbjct: 1   MDSKRCSSTILLLAINLLFFTLVSGCNTCVQPRPNPNPRPTPSP-PT---KSCPRDALKL 60

Query: 61  GVCTKLLNGPVSALVGSLPNTQCCSLLDGLIDLEAAVCLCTAIKANVLGININIPISLSL 120
           GVC KLLNG +  +VG+ P+T CCS+L GL+DLEAAVCLCTAIKANVLGININIPISLSL
Sbjct: 61  GVCAKLLNGTIGGVVGNPPDTPCCSVLSGLVDLEAAVCLCTAIKANVLGININIPISLSL 120

Query: 121 LVNVCGKKVPSEFQCA 137
           L+N CGK++PS+F CA
Sbjct: 121 LINTCGKQLPSDFICA 132

BLAST of Cla005662 vs. NCBI nr
Match: gi|848891570|ref|XP_012845892.1| (PREDICTED: 14 kDa proline-rich protein DC2.15 [Erythranthe guttata])

HSP 1 Score: 187.2 bits (474), Expect = 1.9e-44
Identity = 84/136 (61.76%), Postives = 109/136 (80.15%), Query Frame = 1

Query: 1   MDSKRTSNAAIFLVLNLVFFAFVNVCHACNDPKPKPNPKPYPNPNPTPVVKSCPRDALKL 60
           MD +++S+A +FL++NLVFF  V+ C       P   PKPYPNPNPTPV  SCPRDALKL
Sbjct: 1   MDPRKSSSAILFLLVNLVFFVLVSGCK-----DPPSIPKPYPNPNPTPVKGSCPRDALKL 60

Query: 61  GVCTKLLNGPVSALVGSLPNTQCCSLLDGLIDLEAAVCLCTAIKANVLGININIPISLSL 120
           G+CTK+LNG +  ++G+ P+  CCS+L GL+DLEAA+CLCTA+KAN+LGININIPI+LSL
Sbjct: 61  GICTKILNGSIGTIIGNPPDIPCCSILGGLLDLEAAICLCTALKANILGININIPIALSL 120

Query: 121 LVNVCGKKVPSEFQCA 137
           L+N CGK++P +F CA
Sbjct: 121 LINTCGKELPKDFICA 131

BLAST of Cla005662 vs. NCBI nr
Match: gi|848891539|ref|XP_012845878.1| (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Erythranthe guttata])

HSP 1 Score: 183.3 bits (464), Expect = 2.8e-43
Identity = 88/136 (64.71%), Postives = 102/136 (75.00%), Query Frame = 1

Query: 6   TSNAAIFLVLNLVFFAFVNVCHACNDP-KPKPNPKPYPNPNPTPVVKS----CPRDALKL 65
           T+  AIFLVLNL+FF   + C  C+DP KPKP PKP P PNPTP   S    CP+D LKL
Sbjct: 10  TNTIAIFLVLNLLFFTLASSCGTCSDPIKPKPQPKPQPKPNPTPYYPSKGYYCPKDTLKL 69

Query: 66  GVCTKLLNGPVSALVGSLPNTQCCSLLDGLIDLEAAVCLCTAIKANVLGININIPISLSL 125
           GVCT LL G +   +G+ P T CCSL+ GL DLEAAVCLCTAIKANVLGIN+N+P+SLSL
Sbjct: 70  GVCTNLLGGLIGLTIGTPPKTPCCSLIAGLADLEAAVCLCTAIKANVLGINLNVPLSLSL 129

Query: 126 LVNVCGKKVPSEFQCA 137
           L+NVC KKVP +F CA
Sbjct: 130 LLNVCSKKVPKDFICA 145

BLAST of Cla005662 vs. NCBI nr
Match: gi|502181571|ref|XP_004516836.1| (PREDICTED: lipid transfer protein EARLI 1-like [Cicer arietinum])

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-38
Identity = 82/157 (52.23%), Postives = 103/157 (65.61%), Query Frame = 1

Query: 1   MDSKRTSNAAIFLVLNLVFFAFVNVCHACN---------------------DPKPKPNPK 60
           M SK  S  A+F  LNL+FF+ V+   +C+                     +PKP P+PK
Sbjct: 1   MASKTCSTLALFFTLNLLFFSLVSASGSCSCNPNPNPNPKPSPTPKPKPNPNPKPNPSPK 60

Query: 61  PYPNPNPTPVVKSCPRDALKLGVCTKLLNGPVSALVGSLPNTQCCSLLDGLIDLEAAVCL 120
           P P+P PTP   SCP D LKLGVC  +LNG ++  +G  P   CCSLL+GL DL+AA CL
Sbjct: 61  PNPSPKPTPSSGSCPSDTLKLGVCANVLNGLLNIKLGQPPVAPCCSLLEGLTDLQAAACL 120

Query: 121 CTAIKANVLGININIPISLSLLVNVCGKKVPSEFQCA 137
           CTA+KAN+LGIN+N+PISLSLL+NVC KKVP +FQCA
Sbjct: 121 CTALKANILGINLNLPISLSLLLNVCSKKVPRDFQCA 157

BLAST of Cla005662 vs. NCBI nr
Match: gi|1021470327|ref|XP_016188706.1| (PREDICTED: lipid transfer protein EARLI 1-like [Arachis ipaensis])

HSP 1 Score: 158.3 bits (399), Expect = 9.5e-36
Identity = 80/165 (48.48%), Postives = 104/165 (63.03%), Query Frame = 1

Query: 6   TSNAAIFLVLNLVFFAFVNVC-HACNDPKPKPNPKPYPN------------------PNP 65
           ++N A+F  LNL+FFA V+ C + C +PKPKPNP P PN                  PNP
Sbjct: 8   SNNIALFFTLNLLFFALVSGCGYKCPNPKPKPNPNPNPNNPNPNPNNPNNPNPNPNNPNP 67

Query: 66  TPVVKS---------------CPRDALKLGVCTKLLNGPVSALVGSLPNTQCCSLLDGLI 125
            P   +               CPRDALKLG+C  +L+G ++  +G  P T CCSLL GL+
Sbjct: 68  NPNPNNPNPNPNPNNPNNNMTCPRDALKLGICANVLSGLLNITLGQPPVTPCCSLLSGLV 127

Query: 126 DLEAAVCLCTAIKANVLGININIPISLSLLVNVCGKKVPSEFQCA 137
           DLEAA+CLCTA++ N+LGININ+PISLSLL+NVC ++VP  FQC+
Sbjct: 128 DLEAAICLCTALRGNILGININLPISLSLLLNVCSRQVPRGFQCS 172

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
14KD_DAUCA7.5e-4157.3514 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1[more]
ERLL1_ARATH3.6e-3547.53pEARLI1-like lipid transfer protein 1 OS=Arabidopsis thaliana GN=AZI1 PE=1 SV=1[more]
ERLI1_ARATH2.6e-3344.64Lipid transfer protein EARLI 1 OS=Arabidopsis thaliana GN=EARLI1 PE=1 SV=1[more]
ERLL2_ARATH9.8e-3341.76pEARLI1-like lipid transfer protein 2 OS=Arabidopsis thaliana GN=At4g12490 PE=2 ... [more]
ERLL3_ARATH4.9e-3240.68pEARLI1-like lipid transfer protein 3 OS=Arabidopsis thaliana GN=At4g12500 PE=2 ... [more]
Match NameE-valueIdentityDescription
gi|590676962|ref|XP_007039887.1|5.9e-4666.91Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
gi|848891570|ref|XP_012845892.1|1.9e-4461.76PREDICTED: 14 kDa proline-rich protein DC2.15 [Erythranthe guttata][more]
gi|848891539|ref|XP_012845878.1|2.8e-4364.71PREDICTED: 14 kDa proline-rich protein DC2.15-like [Erythranthe guttata][more]
gi|502181571|ref|XP_004516836.1|1.6e-3852.23PREDICTED: lipid transfer protein EARLI 1-like [Cicer arietinum][more]
gi|1021470327|ref|XP_016188706.1|9.5e-3648.48PREDICTED: lipid transfer protein EARLI 1-like [Arachis ipaensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
IPR027923Hydrophob_seed
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0008233 peptidase activity
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU78600watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla005662Cla005662.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU78600WMU78600transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 53..135
score: 3.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainunknownSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 55..135
score: 5.48
IPR027923Hydrophobic seed proteinPFAMPF14547Hydrophob_seedcoord: 53..136
score: 1.9
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 51..135
score: 7.1
NoneNo IPR availablePANTHERPTHR31731FAMILY NOT NAMEDcoord: 1..136
score: 2.0
NoneNo IPR availablePANTHERPTHR31731:SF8BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEINcoord: 1..136
score: 2.0

The following gene(s) are paralogous to this gene:

None