Cla005653 (gene) Watermelon (97103) v1

Overview
NameCla005653
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGermacrene D synthase (AHRD V1 ***- F8SME6_CITHY); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain
LocationChr10 : 3144530 .. 3145900 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGCAGGCTAGAAATTACTTTTATGAAGCAAAATGGTATAGAGAAGGGTATACACCAACAATAGAGGAGTACTTAAGGGTTGGAAGAGTAACTGCTTGCTACTCATTGTTTTCTCCCATTTCATTTCTTGGTATGGGAGATGTTGCTTCAATAGAGGCCTTTGAATGGATAGAGAGTGACCCCAAATCGCTTATTGGCTCAGGAGTAATTGGTAGGATCATGAACGATATTACTTCCCACAAGGTAAATTCTTGCATTTTTTTTTTTTTAATCATGATTCATACAATCTTTTATCTTATAATTGTTGAACTTTAAAGAAAAAATATTTTGAATGTTTAGGTTAAGTTATCGTTTAGTATGTTGTTAACGATTGAGTTTAAATCTTTATACTATTATTTTTGCATTATTTAATGTTCAAATTCCTATTCTATTATTATATTCTTTGATCATTTATCAATAATAATACATGTATATATCATAACTCAATAGTAGTTTATTGAATACACATGCACATGCATGGTTAAATTTTTACTCTAGCTCAAATATTCCCAATATATATAATGGATCAAAAGGTGATACGGTCCAAATCAATCTCACCCTACTACAAATTGATGAACTATCTCTTATAAACACTACTTTTTACCTTAGTTTTCTTTATTTTGTTATCCATTTTTTAGAATTTTTTTTTAATTTTATTTTTTAAAGTTAGCTATGATTTCAAATGATTCCTTAGGAAAAATGAAAATAATTGTAACTAAACTTAATGGTGAGAAAACAAGCATAATTTAAAAAAATTTAAATCATGTTCTCAAATGAAGTCTTGATTATCCAAGCAAGAAAGTCAACAATAGAGAGCATTACTCAACTAGCATAAACCTATACTATCAACCTCGAGGTCTAAGGTTTAATCTCTCTCACCCACCCCACATATCATTACAACACAAAATAATTAAACACTAGTAAACCCTACCTAAGATCAAGCAACGGAAAGATGTCAATACCATTAAAAAAATGAGGGTATGAAGATTTGAACATATTTTTGTCTCTAACTGTTTGTTTGATGTATAGTTCGAACAAGAAAGAGGCCATGTCGCTTCCGCAGTTGAATGTTATATGATACAGTATGATGTATCAGAAGAAGAGGCAATACAAGAATTAGAGAAGCAAGTTACAAATGCTTGGAAGGATATCATTGAAGATTATGTGCAATCTATTGAGGATGTTCCAAACACTATTTTAATGAGTGTTATAAATCTTGCTCGACTTTCAGACACCTTCTATAAAGATGAAGATGGATATACATACTCAAGTGGAGAAACCAAACGTATTGTCCTATCTTTAGTCGTTGATCCACTACCAATTTGA

mRNA sequence

ATGAAAAGGCAGGCTAGAAATTACTTTTATGAAGCAAAATGGTATAGAGAAGGGTATACACCAACAATAGAGGAGTACTTAAGGGTTGGAAGAGTAACTGCTTGCTACTCATTGTTTTCTCCCATTTCATTTCTTGGTATGGGAGATGTTGCTTCAATAGAGGCCTTTGAATGGATAGAGAGTGACCCCAAATCGCTTATTGGCTCAGGAGTAATTGGTAGGATCATGAACGATATTACTTCCCACAAGTTCGAACAAGAAAGAGGCCATGTCGCTTCCGCAGTTGAATGTTATATGATACAGTATGATGTATCAGAAGAAGAGGCAATACAAGAATTAGAGAAGCAAGTTACAAATGCTTGGAAGGATATCATTGAAGATTATGTGCAATCTATTGAGGATGTTCCAAACACTATTTTAATGAGTGTTATAAATCTTGCTCGACTTTCAGACACCTTCTATAAAGATGAAGATGGATATACATACTCAAGTGGAGAAACCAAACGTATTGTCCTATCTTTAGTCGTTGATCCACTACCAATTTGA

Coding sequence (CDS)

ATGAAAAGGCAGGCTAGAAATTACTTTTATGAAGCAAAATGGTATAGAGAAGGGTATACACCAACAATAGAGGAGTACTTAAGGGTTGGAAGAGTAACTGCTTGCTACTCATTGTTTTCTCCCATTTCATTTCTTGGTATGGGAGATGTTGCTTCAATAGAGGCCTTTGAATGGATAGAGAGTGACCCCAAATCGCTTATTGGCTCAGGAGTAATTGGTAGGATCATGAACGATATTACTTCCCACAAGTTCGAACAAGAAAGAGGCCATGTCGCTTCCGCAGTTGAATGTTATATGATACAGTATGATGTATCAGAAGAAGAGGCAATACAAGAATTAGAGAAGCAAGTTACAAATGCTTGGAAGGATATCATTGAAGATTATGTGCAATCTATTGAGGATGTTCCAAACACTATTTTAATGAGTGTTATAAATCTTGCTCGACTTTCAGACACCTTCTATAAAGATGAAGATGGATATACATACTCAAGTGGAGAAACCAAACGTATTGTCCTATCTTTAGTCGTTGATCCACTACCAATTTGA

Protein sequence

MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIESDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTNAWKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPLPI
Homology
[Close]
BLAST of Cla005653 vs. Swiss-Prot
Match: SAUST_SANAS (Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.0e-45
Identity = 88/179 (49.16%), Postives = 118/179 (65.92%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MK+    Y  EAKW  E Y PT +EY+ V  VT+ Y+  + IS+LGMG++AS EAF+W+ 
Sbjct: 383 MKKLVEGYMDEAKWCHEKYVPTFQEYMSVALVTSGYTFLTTISYLGMGEIASKEAFDWLF 442

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTNA 120
           S P  +  S  +GR+M+D  SHKFEQERGHVAS +ECYM QY V+EEEA  E  K++  A
Sbjct: 443 SHPPVIEASESVGRLMDDTRSHKFEQERGHVASGIECYMKQYGVTEEEARDEFRKRLVKA 502

Query: 121 WKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPL 180
           WKDI E+ ++    VP  +LM ++NL R+ D  YK+EDGYT+     K  + SL++DP+
Sbjct: 503 WKDINEECLRPYR-VPKPLLMRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPM 560

[Close]
BLAST of Cla005653 vs. Swiss-Prot
Match: STPS1_SANAL (Sesquiterpene synthase OS=Santalum album PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.9e-45
Identity = 89/179 (49.72%), Postives = 118/179 (65.92%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MK+    Y  EAKW  E Y PT EEY+ V  VT+ Y+  + IS+LGMG++AS EAF+W+ 
Sbjct: 380 MKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLTTISYLGMGEIASKEAFDWLF 439

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTNA 120
           S P  +  S  + R+M+D+ SHKFEQERGHVAS +ECYM QY V+EEEA  E  KQ+  A
Sbjct: 440 SHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMKQYGVTEEEAHDEFRKQLVKA 499

Query: 121 WKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPL 180
           WKDI E+ ++    VP  +LM ++NL R+ D  YK+EDGYT+     K  + SL++DP+
Sbjct: 500 WKDINEECLRPYR-VPKPLLMRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPM 557

[Close]
BLAST of Cla005653 vs. Swiss-Prot
Match: SAST_SANAL (Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.7e-45
Identity = 87/179 (48.60%), Postives = 119/179 (66.48%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MK+    Y  EAKW  E Y PT EEY+ V  VT+ Y+  + +S+LGMG++AS EAF+W+ 
Sbjct: 380 MKKLVEGYMDEAKWCHEKYVPTFEEYMSVALVTSGYTFLTTMSYLGMGEIASKEAFDWLF 439

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTNA 120
           S P  +  S  +GR+M+D+ SHKFE+ERGHVAS +ECYM QY V+EEEA  E  K++  A
Sbjct: 440 SHPPVIEASESVGRLMDDMRSHKFERERGHVASGIECYMKQYSVTEEEAYDEFCKRLVKA 499

Query: 121 WKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPL 180
           WKDI E+ ++    VP  +LM ++NL R+ D  YK+EDGYT+     K  + SL++DP+
Sbjct: 500 WKDINEECLRPYH-VPKPLLMRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPM 557

[Close]
BLAST of Cla005653 vs. Swiss-Prot
Match: TPSGD_VITVI ((-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-44
Identity = 90/181 (49.72%), Postives = 119/181 (65.75%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MK Q R Y+ EAKW +    PT+EEY+ V  VT+ YS+ +  SF+GMGD  + E+F+WI 
Sbjct: 378 MKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLATTSFVGMGDAVTKESFDWIF 437

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTNA 120
           S PK +  S ++ R+M+D+  HKFEQ+RGHVASAVECYM Q+  SE+E   E  + V  A
Sbjct: 438 SKPKIVRASAIVCRLMDDMVFHKFEQKRGHVASAVECYMKQHGASEQETPNEFPQPVREA 497

Query: 121 WKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPLP 180
           WKDI E+ +     VP  ILM V+NLAR+ D  YK+EDGYT+     K  V S+++DP+P
Sbjct: 498 WKDINEECLIPTA-VPMPILMRVLNLARVIDVIYKNEDGYTHFGAVLKDFVTSMLIDPVP 557

Query: 181 I 182
           I
Sbjct: 558 I 557

[Close]
BLAST of Cla005653 vs. Swiss-Prot
Match: SMST_SANMU (Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.3e-44
Identity = 87/179 (48.60%), Postives = 117/179 (65.36%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MK     Y  EAKW  E Y PT +EY+ V  VT+ Y+  + IS+LGMG++AS EAF+W+ 
Sbjct: 383 MKTIVEGYMDEAKWCHEKYVPTFQEYMSVALVTSGYTFLTTISYLGMGEIASKEAFDWLF 442

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTNA 120
           S P  +  S  +GR+M+D+ SHKFEQERGHVAS +ECYM QY V+EEEA  E  K++  A
Sbjct: 443 SHPPVIEASESVGRLMDDMRSHKFEQERGHVASGIECYMKQYGVTEEEAHDEFRKRLVKA 502

Query: 121 WKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPL 180
           WKDI E+ ++    VP  +L  ++NL R+ D  YK+EDGYT+     K  + SL++DP+
Sbjct: 503 WKDINEECLRPYR-VPKPLLTRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPV 560

[Close]
BLAST of Cla005653 vs. TrEMBL
Match: A0A0A0L6X1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G021130 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.5e-85
Identity = 157/182 (86.26%), Postives = 173/182 (95.05%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MKRQARNYF+EAKWY+E YTPTIEEYLRVGR+TACYSLFSPISFLGMG+VASIEAFEWIE
Sbjct: 372 MKRQARNYFFEAKWYKEEYTPTIEEYLRVGRITACYSLFSPISFLGMGNVASIEAFEWIE 431

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQE-LEKQVTN 120
           SDPKSLIG+GVIGRIMNDI SHKFEQERGHVASAVECYM+QY+V E+EAI+E LEKQV N
Sbjct: 432 SDPKSLIGAGVIGRIMNDIVSHKFEQERGHVASAVECYMMQYNVLEKEAIRELLEKQVAN 491

Query: 121 AWKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPL 180
           AWK+IIEDYV+SIEDVPNTI  SV+NLARLS+TFYKDEDGYT S GETKRIV+SLV+DP+
Sbjct: 492 AWKNIIEDYVESIEDVPNTIFKSVLNLARLSETFYKDEDGYTCSDGETKRIVISLVLDPI 551

Query: 181 PI 182
           PI
Sbjct: 552 PI 553

[Close]
BLAST of Cla005653 vs. TrEMBL
Match: A0A0A0L1X6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G039850 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.8e-63
Identity = 114/181 (62.98%), Postives = 142/181 (78.45%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MKRQ R YF EAKW+ EGY PT EEY++V  V+ CY LF PISF+GMG  AS EAFEW+E
Sbjct: 382 MKRQCRVYFEEAKWFHEGYVPTFEEYMKVAIVSTCYYLFVPISFVGMGIAASQEAFEWVE 441

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTNA 120
           SDP  L  SG++GR+MNDITSHK+EQ+RGH+ SAVECYM Q++VSEE+AI EL K++T A
Sbjct: 442 SDPMLLKASGIVGRLMNDITSHKYEQKRGHMDSAVECYMKQHEVSEEDAIVELGKEITKA 501

Query: 121 WKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPLP 180
           WKD+IEDY+     + N ILM V+NL RLSD FYK EDGYT+  G+TK  + S+++DP+P
Sbjct: 502 WKDVIEDYIMKSTKLSNAILMRVLNLTRLSDLFYKKEDGYTFVHGDTKHFITSMLIDPIP 561

Query: 181 I 182
           I
Sbjct: 562 I 562

[Close]
BLAST of Cla005653 vs. TrEMBL
Match: A0A0A0L4K8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G041370 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.6e-61
Identity = 115/180 (63.89%), Postives = 140/180 (77.78%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MKRQ R YF EAKW+ EGY PT+EEY++V  V+ CY LF  ISF+GMG  AS EAF+WIE
Sbjct: 211 MKRQCRVYFEEAKWFYEGYVPTMEEYMKVAIVSTCYHLFVQISFVGMGVAASQEAFQWIE 270

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTNA 120
           SDP  L  SG+IGR++NDITSH+FEQ+RGH+ASAVECYM QY+VSEE A+ EL+K++  A
Sbjct: 271 SDPMLLKASGIIGRLINDITSHQFEQQRGHIASAVECYMKQYEVSEEVAVIELQKEIEKA 330

Query: 121 WKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPLP 180
           WKD IEDY+       N ILM V+NLARLSD +YK EDGYT+S GETK  V  +++DPLP
Sbjct: 331 WKDGIEDYIMKSTKFSNAILMRVLNLARLSDFYYKKEDGYTFSHGETKDFVTYMLIDPLP 390

[Close]
BLAST of Cla005653 vs. TrEMBL
Match: A0A0B4VFP0_CUCME (Sesquiterpene synthase Tps3 OS=Cucumis melo PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.1e-60
Identity = 109/181 (60.22%), Postives = 139/181 (76.80%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MKRQ R YF EAKW+ EGY PT EEY++V  V+ C+ ++ PISF+GMG  AS E FEW+E
Sbjct: 342 MKRQCRAYFAEAKWFHEGYMPTFEEYMKVAIVSTCFYVYVPISFVGMGVAASQEVFEWVE 401

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTNA 120
           SDP  L  SG+IGR+MNDITSHKFEQERGH+ SAVECYM Q++VSEE+AI EL K++T A
Sbjct: 402 SDPMLLKASGIIGRLMNDITSHKFEQERGHIDSAVECYMKQHEVSEEDAIIELAKEITKA 461

Query: 121 WKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPLP 180
           WKD+IEDY+     +   ILM V+N  RLS+ FYK EDGYT+  G+TK  + ++++DP+P
Sbjct: 462 WKDMIEDYIMKSTKLSTAILMRVLNHGRLSEFFYKKEDGYTFVHGDTKHFITAMLIDPIP 521

Query: 181 I 182
           I
Sbjct: 522 I 522

[Close]
BLAST of Cla005653 vs. TrEMBL
Match: A0A0A0L5V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G040860 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 9.1e-57
Identity = 109/182 (59.89%), Postives = 141/182 (77.47%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGD-VASIEAFEWI 60
           MK Q R +F EAKW+ EGY PT+EEY++V   +A Y +F+ ISFL +G+  AS + +EW 
Sbjct: 1   MKNQCRAFFMEAKWFNEGYIPTVEEYMKVSITSAAYYVFASISFLTIGNNAASKQVYEWA 60

Query: 61  ESDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTN 120
           ++DP  L  + VIGR +NDI SHKFEQERGHVASAVECYM QY VSEEEA+ EL+KQV N
Sbjct: 61  QTDPILLRATSVIGRFVNDIASHKFEQERGHVASAVECYMKQYGVSEEEAVTELQKQVVN 120

Query: 121 AWKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPL 180
           AWKDIIEDY++S +  P+ IL  V+N+ARLSD FYK+EDGYT++ GETKR +  ++ +P+
Sbjct: 121 AWKDIIEDYMKSSKLFPSFILDHVLNVARLSDLFYKEEDGYTFADGETKRFITLMLKNPM 180

Query: 181 PI 182
           PI
Sbjct: 181 PI 182

[Close]
BLAST of Cla005653 vs. NCBI nr
Match: gi|778675433|ref|XP_004147250.2| (PREDICTED: (-)-germacrene D synthase-like [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 5.1e-85
Identity = 157/182 (86.26%), Postives = 173/182 (95.05%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MKRQARNYF+EAKWY+E YTPTIEEYLRVGR+TACYSLFSPISFLGMG+VASIEAFEWIE
Sbjct: 372 MKRQARNYFFEAKWYKEEYTPTIEEYLRVGRITACYSLFSPISFLGMGNVASIEAFEWIE 431

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQE-LEKQVTN 120
           SDPKSLIG+GVIGRIMNDI SHKFEQERGHVASAVECYM+QY+V E+EAI+E LEKQV N
Sbjct: 432 SDPKSLIGAGVIGRIMNDIVSHKFEQERGHVASAVECYMMQYNVLEKEAIRELLEKQVAN 491

Query: 121 AWKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPL 180
           AWK+IIEDYV+SIEDVPNTI  SV+NLARLS+TFYKDEDGYT S GETKRIV+SLV+DP+
Sbjct: 492 AWKNIIEDYVESIEDVPNTIFKSVLNLARLSETFYKDEDGYTCSDGETKRIVISLVLDPI 551

Query: 181 PI 182
           PI
Sbjct: 552 PI 553

[Close]
BLAST of Cla005653 vs. NCBI nr
Match: gi|659095987|ref|XP_008448865.1| (PREDICTED: (-)-germacrene D synthase-like [Cucumis melo])

HSP 1 Score: 319.3 bits (817), Expect = 4.3e-84
Identity = 155/182 (85.16%), Postives = 170/182 (93.41%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MKRQAR YF+EAKWY+E YTPTIEEYLR+GRVTACYSLFSPISFLGMG+VAS EAFEWIE
Sbjct: 386 MKRQARYYFFEAKWYKEEYTPTIEEYLRIGRVTACYSLFSPISFLGMGNVASTEAFEWIE 445

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTNA 120
           SDPK+L+GSGVIGRIMNDI SHKFEQERGHVASAVECYMIQY+V E+EA QELEKQVTNA
Sbjct: 446 SDPKALVGSGVIGRIMNDIVSHKFEQERGHVASAVECYMIQYNVPEKEARQELEKQVTNA 505

Query: 121 WKDIIEDYVQSIE-DVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPL 180
           WKDIIEDY++S E DVPNTI  SV+NLARLSDTFYKDEDGYT S GETKR+++SLV+DPL
Sbjct: 506 WKDIIEDYIKSTENDVPNTIFKSVLNLARLSDTFYKDEDGYTCSGGETKRMIISLVLDPL 565

Query: 181 PI 182
           PI
Sbjct: 566 PI 567

[Close]
BLAST of Cla005653 vs. NCBI nr
Match: gi|778675684|ref|XP_011650453.1| (PREDICTED: (-)-germacrene D synthase-like [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 5.4e-63
Identity = 114/181 (62.98%), Postives = 142/181 (78.45%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MKRQ R YF EAKW+ EGY PT EEY++V  V+ CY LF PISF+GMG  AS EAFEW+E
Sbjct: 382 MKRQCRVYFEEAKWFHEGYVPTFEEYMKVAIVSTCYYLFVPISFVGMGIAASQEAFEWVE 441

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTNA 120
           SDP  L  SG++GR+MNDITSHK+EQ+RGH+ SAVECYM Q++VSEE+AI EL K++T A
Sbjct: 442 SDPMLLKASGIVGRLMNDITSHKYEQKRGHMDSAVECYMKQHEVSEEDAIVELGKEITKA 501

Query: 121 WKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPLP 180
           WKD+IEDY+     + N ILM V+NL RLSD FYK EDGYT+  G+TK  + S+++DP+P
Sbjct: 502 WKDVIEDYIMKSTKLSNAILMRVLNLTRLSDLFYKKEDGYTFVHGDTKHFITSMLIDPIP 561

Query: 181 I 182
           I
Sbjct: 562 I 562

[Close]
BLAST of Cla005653 vs. NCBI nr
Match: gi|778688341|ref|XP_011652723.1| (PREDICTED: (-)-germacrene D synthase-like [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 5.1e-61
Identity = 115/180 (63.89%), Postives = 140/180 (77.78%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MKRQ R YF EAKW+ EGY PT+EEY++V  V+ CY LF  ISF+GMG  AS EAF+WIE
Sbjct: 315 MKRQCRVYFEEAKWFYEGYVPTMEEYMKVAIVSTCYHLFVQISFVGMGVAASQEAFQWIE 374

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTNA 120
           SDP  L  SG+IGR++NDITSH+FEQ+RGH+ASAVECYM QY+VSEE A+ EL+K++  A
Sbjct: 375 SDPMLLKASGIIGRLINDITSHQFEQQRGHIASAVECYMKQYEVSEEVAVIELQKEIEKA 434

Query: 121 WKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPLP 180
           WKD IEDY+       N ILM V+NLARLSD +YK EDGYT+S GETK  V  +++DPLP
Sbjct: 435 WKDGIEDYIMKSTKFSNAILMRVLNLARLSDFYYKKEDGYTFSHGETKDFVTYMLIDPLP 494

[Close]
BLAST of Cla005653 vs. NCBI nr
Match: gi|700200836|gb|KGN55969.1| (hypothetical protein Csa_3G041370 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 5.1e-61
Identity = 115/180 (63.89%), Postives = 140/180 (77.78%), Query Frame = 1 

Query: 1   MKRQARNYFYEAKWYREGYTPTIEEYLRVGRVTACYSLFSPISFLGMGDVASIEAFEWIE 60
           MKRQ R YF EAKW+ EGY PT+EEY++V  V+ CY LF  ISF+GMG  AS EAF+WIE
Sbjct: 211 MKRQCRVYFEEAKWFYEGYVPTMEEYMKVAIVSTCYHLFVQISFVGMGVAASQEAFQWIE 270

Query: 61  SDPKSLIGSGVIGRIMNDITSHKFEQERGHVASAVECYMIQYDVSEEEAIQELEKQVTNA 120
           SDP  L  SG+IGR++NDITSH+FEQ+RGH+ASAVECYM QY+VSEE A+ EL+K++  A
Sbjct: 271 SDPMLLKASGIIGRLINDITSHQFEQQRGHIASAVECYMKQYEVSEEVAVIELQKEIEKA 330

Query: 121 WKDIIEDYVQSIEDVPNTILMSVINLARLSDTFYKDEDGYTYSSGETKRIVLSLVVDPLP 180
           WKD IEDY+       N ILM V+NLARLSD +YK EDGYT+S GETK  V  +++DPLP
Sbjct: 331 WKDGIEDYIMKSTKFSNAILMRVLNLARLSDFYYKKEDGYTFSHGETKDFVTYMLIDPLP 390

The following BLAST results are available for this feature:
BLAST of Cla005653 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SAUST_SANAS3.0e-4549.16Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 ... [more]
STPS1_SANAL3.9e-4549.72Sesquiterpene synthase OS=Santalum album PE=1 SV=1[more]
SAST_SANAL6.7e-4548.60Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1[more]
TPSGD_VITVI1.9e-4449.72(-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1[more]
SMST_SANMU3.3e-4448.60Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1[more]
BLAST of Cla005653 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6X1_CUCSA3.5e-8586.26Uncharacterized protein OS=Cucumis sativus GN=Csa_3G021130 PE=3 SV=1[more]
A0A0A0L1X6_CUCSA3.8e-6362.98Uncharacterized protein OS=Cucumis sativus GN=Csa_3G039850 PE=3 SV=1[more]
A0A0A0L4K8_CUCSA3.6e-6163.89Uncharacterized protein OS=Cucumis sativus GN=Csa_3G041370 PE=3 SV=1[more]
A0A0B4VFP0_CUCME5.1e-6060.22Sesquiterpene synthase Tps3 OS=Cucumis melo PE=2 SV=1[more]
A0A0A0L5V3_CUCSA9.1e-5759.89Uncharacterized protein OS=Cucumis sativus GN=Csa_3G040860 PE=4 SV=1[more]
BLAST of Cla005653 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778675433|ref|XP_004147250.2|5.1e-8586.26PREDICTED: (-)-germacrene D synthase-like [Cucumis sativus][more]
gi|659095987|ref|XP_008448865.1|4.3e-8485.16PREDICTED: (-)-germacrene D synthase-like [Cucumis melo][more]
gi|778675684|ref|XP_011650453.1|5.4e-6362.98PREDICTED: (-)-germacrene D synthase-like [Cucumis sativus][more]
gi|778688341|ref|XP_011652723.1|5.1e-6163.89PREDICTED: (-)-germacrene D synthase-like [Cucumis sativus][more]
gi|700200836|gb|KGN55969.1|5.1e-6163.89hypothetical protein Csa_3G041370 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005630Terpene_synthase_metal-bd
IPR008949Isoprenoid_synthase_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0000287magnesium ion binding
GO:0010333terpene synthase activity
GO:0016829lyase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0010333 terpene synthase activity
molecular_function GO:0016829 lyase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla005653Cla005653.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005630Terpene synthase, metal-binding domainPFAMPF03936Terpene_synth_Ccoord: 1..123
score: 1.6
IPR008949Isoprenoid synthase domainGENE3DG3DSA:1.10.600.10coord: 1..180
score: 1.6
IPR008949Isoprenoid synthase domainunknownSSF48576Terpenoid synthasescoord: 2..179
score: 7.19
NoneNo IPR availablePANTHERPTHR31225FAMILY NOT NAMEDcoord: 1..181
score: 9.3
NoneNo IPR availablePANTHERPTHR31225:SF15ALPHA-HUMULENE/(-)-(E)-BETA-CARYOPHYLLENE SYNTHASEcoord: 1..181
score: 9.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla005653ClCG10G002800Watermelon (Charleston Gray)wcgwmB053
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla005653Silver-seed gourdcarwmB0526
Cla005653Cucumber (Chinese Long) v3cucwmB205
Cla005653Cucumber (Chinese Long) v3cucwmB398
Cla005653Watermelon (97103) v2wmwmbB050
Cla005653Watermelon (97103) v2wmwmbB053
Cla005653Wax gourdwgowmB012
Cla005653Wax gourdwgowmB057
Cla005653Watermelon (97103) v1wmwmB049
Cla005653Cucumber (Gy14) v1cgywmB547
Cla005653Cucumber (Gy14) v1cgywmB585
Cla005653Cucurbita maxima (Rimu)cmawmB254
Cla005653Cucurbita maxima (Rimu)cmawmB295
Cla005653Cucurbita maxima (Rimu)cmawmB553
Cla005653Cucurbita maxima (Rimu)cmawmB790
Cla005653Cucurbita moschata (Rifu)cmowmB245
Cla005653Cucurbita moschata (Rifu)cmowmB288
Cla005653Cucurbita moschata (Rifu)cmowmB545
Cla005653Cucurbita moschata (Rifu)cmowmB784
Cla005653Wild cucumber (PI 183967)cpiwmB195
Cla005653Wild cucumber (PI 183967)cpiwmB381
Cla005653Melon (DHL92) v3.5.1mewmB452
Cla005653Watermelon (Charleston Gray)wcgwmB119
Cla005653Cucumber (Chinese Long) v2cuwmB195
Cla005653Cucumber (Chinese Long) v2cuwmB375
Cla005653Cucurbita pepo (Zucchini)cpewmB205
Cla005653Cucurbita pepo (Zucchini)cpewmB828
Cla005653Bottle gourd (USVL1VR-Ls)lsiwmB008
Cla005653Bottle gourd (USVL1VR-Ls)lsiwmB428
Cla005653Cucumber (Gy14) v2cgybwmB184
Cla005653Cucumber (Gy14) v2cgybwmB348
Cla005653Melon (DHL92) v3.6.1medwmB004
Cla005653Melon (DHL92) v3.6.1medwmB433