Cla005586 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005586
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	GPI-anchored protein (AHRD V1 -- Q9ZWN0_VIGRA)
Location	Chr9 : 33709394 .. 33709627 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATATGACAACTGATTGTGCTTCAACCATGTTTAGCAATATTAACCTCTATGGAAAGTATCCACCTGGCCTTTTCTCGAGCCAGTGTCGCGAAGGAGTCAAAGGTCTTGCCTGCCCTCCATTGCCACCTCCATCTGACTCGAACTCAGCTTTGCTCTTGAAACGTTCGTCTCCTTCAATCATCATTGCCTCAGCTGGAGTTGTACTTCTGCTTTTATCGCTTTTGTGA

mRNA sequence

ATGAATGATATGACAACTGATTGTGCTTCAACCATGTTTAGCAATATTAACCTCTATGGAAAGTATCCACCTGGCCTTTTCTCGAGCCAGTGTCGCGAAGGAGTCAAAGGTCTTGCCTGCCCTCCATTGCCACCTCCATCTGACTCGAACTCAGCTTTGCTCTTGAAACGTTCGTCTCCTTCAATCATCATTGCCTCAGCTGGAGTTGTACTTCTGCTTTTATCGCTTTTGTGA

Coding sequence (CDS)

ATGAATGATATGACAACTGATTGTGCTTCAACCATGTTTAGCAATATTAACCTCTATGGAAAGTATCCACCTGGCCTTTTCTCGAGCCAGTGTCGCGAAGGAGTCAAAGGTCTTGCCTGCCCTCCATTGCCACCTCCATCTGACTCGAACTCAGCTTTGCTCTTGAAACGTTCGTCTCCTTCAATCATCATTGCCTCAGCTGGAGTTGTACTTCTGCTTTTATCGCTTTTGTGA

Protein sequence

MNDMTTDCASTMFSNINLYGKYPPGLFSSQCREGVKGLACPPLPPPSDSNSALLLKRSSPSIIIASAGVVLLLLSLL

Homology

[Close]

BLAST of Cla005586 vs. Swiss-Prot
Match: LRE_ARATH (GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.4e-12
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1


Query: 1   MNDMTTDCASTMFSNINLYGKYPPGLFSSQCREGVKGLACPPLPPPSDSNSALLLKRSSP 60
           +NDM +DCA TMFS +N+YG YP GLF+++CRE   GL C PLPP    N       S+P
Sbjct: 87  INDMNSDCAQTMFSYMNIYGNYPTGLFANECRERKDGLVC-PLPPLYSHNLNASTADSTP 146

Query: 61  ---SIIIASAGVVLLLLSL 77
              S++I++A  V  LL L
Sbjct: 147 RFISLLISAATAVFALLVL 164

[Close]

BLAST of Cla005586 vs. TrEMBL
Match: A0A0A0K589_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186180 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.9e-25
Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 1   MNDMTTDCASTMFSNINLYGKYPPGLFSSQCREGVKGLACPPLPPPSDSNSALLLKRSSP 60
           +NDMTTDCAST+FS IN+YGKYPPGLFSS CREG +GLACPP PPPS S SA LLKRSSP
Sbjct: 94  LNDMTTDCASTIFSYINIYGKYPPGLFSSICREGAEGLACPPCPPPSHSKSASLLKRSSP 153

Query: 61  SIIIASAGVVLLLLSLL 78
           SI+ AS G++LLLLSL+
Sbjct: 154 SIVNAS-GLLLLLLSLV 169

[Close]

BLAST of Cla005586 vs. TrEMBL
Match: A0A061F3D9_THECC (Lorelei-like-gpi-anchored protein 1 OS=Theobroma cacao GN=TCM_047062 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-18
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 1   MNDMTTDCASTMFSNINLYGKYPPGLFSSQCREGVKGLACPPLPPPSDSNSALLLKRSSP 60
           +ND+TTDCASTMFS INLYGKYPPGLF+S+CREG +GLACP L P S  N++     S+P
Sbjct: 89  INDLTTDCASTMFSYINLYGKYPPGLFASECREGKEGLACPALAPSSSENASGSQLISNP 148

Query: 61  SII-IASAGVVLLLLSLL 78
           S++ +A+AG+++ L  LL
Sbjct: 149 SLLPMATAGILVFLFMLL 166

[Close]

BLAST of Cla005586 vs. TrEMBL
Match: A0A0A0K362_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186190 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-15
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1


Query: 1   MNDMTTDCASTMFSNINLYGKYPPGLFSSQCREGVKGLACPPLPPPSDSNSALLLKRSSP 60
           +ND+T DCASTMFS INLYGKYPPGLFSS+C+EG +GL CP LPP + ++ +   K S P
Sbjct: 93  LNDLTNDCASTMFSYINLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLP 152

Query: 61  SI-IIASAGVVLLL 74
           S  +I   G VLL+
Sbjct: 153 SYSLILLTGFVLLV 166

[Close]

BLAST of Cla005586 vs. TrEMBL
Match: M0TTM6_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-15
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 1   MNDMTTDCASTMFSNINLYGKYPPGLFSSQCREGVKGLACPPLPPPSDSNSA---LLLKR 60
           +ND T DCASTMFS INLYGKYPPGLF+S+CREG +GLACP  PP S++++A   +++ +
Sbjct: 90  LNDETNDCASTMFSYINLYGKYPPGLFASECREGKEGLACPANPPESENDTASAGIIIIQ 149

Query: 61  SSPSIIIASAGVVLLLL 75
           S  S+I+   G+VL  L
Sbjct: 150 SFTSLILI-CGMVLTFL 165

[Close]

BLAST of Cla005586 vs. TrEMBL
Match: B9T0K5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0302720 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.8e-15
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1


Query: 1   MNDMTTDCASTMFSNINLYGKYPPGLFSSQCREGVKGLACPPLPPPS----DSNSALLLK 60
           +ND+T DCASTMFS INLYGKYPPGLF+S+CREG +GL C P PPPS    D N  ++  
Sbjct: 93  LNDLTNDCASTMFSYINLYGKYPPGLFASECREGKEGLEC-PAPPPSHLADDKNGQMM-- 152

Query: 61  RSSPSIIIASAGVVLLL 74
             +PS+++ S  +VLL+
Sbjct: 153 -QNPSLMLTSGFLVLLV 165

[Close]

BLAST of Cla005586 vs. NCBI nr
Match: gi|700188866|gb|KGN44099.1| (hypothetical protein Csa_7G186180 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 5.6e-25
Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 1   MNDMTTDCASTMFSNINLYGKYPPGLFSSQCREGVKGLACPPLPPPSDSNSALLLKRSSP 60
           +NDMTTDCAST+FS IN+YGKYPPGLFSS CREG +GLACPP PPPS S SA LLKRSSP
Sbjct: 94  LNDMTTDCASTIFSYINIYGKYPPGLFSSICREGAEGLACPPCPPPSHSKSASLLKRSSP 153

Query: 61  SIIIASAGVVLLLLSLL 78
           SI+ AS G++LLLLSL+
Sbjct: 154 SIVNAS-GLLLLLLSLV 169

[Close]

BLAST of Cla005586 vs. NCBI nr
Match: gi|590604745|ref|XP_007020320.1| (Lorelei-like-gpi-anchored protein 1 [Theobroma cacao])

HSP 1 Score: 98.2 bits (243), Expect = 6.6e-18
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 1   MNDMTTDCASTMFSNINLYGKYPPGLFSSQCREGVKGLACPPLPPPSDSNSALLLKRSSP 60
           +ND+TTDCASTMFS INLYGKYPPGLF+S+CREG +GLACP L P S  N++     S+P
Sbjct: 89  INDLTTDCASTMFSYINLYGKYPPGLFASECREGKEGLACPALAPSSSENASGSQLISNP 148

Query: 61  SII-IASAGVVLLLLSLL 78
           S++ +A+AG+++ L  LL
Sbjct: 149 SLLPMATAGILVFLFMLL 166

[Close]

BLAST of Cla005586 vs. NCBI nr
Match: gi|1009107807|ref|XP_015881557.1| (PREDICTED: GPI-anchored protein LORELEI [Ziziphus jujuba])

HSP 1 Score: 92.0 bits (227), Expect = 4.7e-16
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 1   MNDMTTDCASTMFSNINLYGKYPPGLFSSQCREGVKGLACPPLPPPSDSNSALLLKRSSP 60
           +ND+T DCASTMFS INLYGKYPPGLF+S+CREG +GLACP  PP S +N     +   P
Sbjct: 95  LNDLTNDCASTMFSYINLYGKYPPGLFASECREGKQGLACPATPPTSVANDTSGSETCYP 154

Query: 61  SII-IASAGVVLLLLSLL 78
            ++ + ++GV+ LL  LL
Sbjct: 155 FLLQLVASGVLALLFQLL 172

[Close]

BLAST of Cla005586 vs. NCBI nr
Match: gi|659093945|ref|XP_008447799.1| (PREDICTED: GPI-anchored protein LORELEI-like [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 4.7e-16
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1


Query: 1   MNDMTTDCASTMFSNINLYGKYPPGLFSSQCREGVKGLACPPLPPPSDSNSALLLKRSSP 60
           +ND+T DCASTMFS INLYGKYPPGLFSS+C+EG +GL CP LPP + ++ +   K S P
Sbjct: 93  INDLTNDCASTMFSYINLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWCSKTSLP 152

Query: 61  SI-IIASAGVVLLL 74
           S  +I   G VLLL
Sbjct: 153 SYSLILLTGFVLLL 166

[Close]

BLAST of Cla005586 vs. NCBI nr
Match: gi|729356666|ref|XP_010545299.1| (PREDICTED: GPI-anchored protein LORELEI [Tarenaya hassleriana])

HSP 1 Score: 91.3 bits (225), Expect = 8.1e-16
Identity = 42/77 (54.55%), Postives = 57/77 (74.03%), Query Frame = 1


Query: 1   MNDMTTDCASTMFSNINLYGKYPPGLFSSQCREGVKGLACPPLPPPSDSNSALLLKRSSP 60
           +ND++TDCA+TMFS INLYGKYPPGLF++QC+EG +GLACP LPP S +N        SP
Sbjct: 92  INDLSTDCATTMFSYINLYGKYPPGLFANQCKEGKEGLACPALPPASAANVNAAHVPVSP 151

Query: 61  SIIIASAGVVLLLLSLL 78
            + +A+   + L ++LL
Sbjct: 152 HLWLATTAALSLFVNLL 168

The following BLAST results are available for this feature:

BLAST of Cla005586 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRE_ARATH	5.4e-12	48.10	GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1	[more]

BLAST of Cla005586 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K589_CUCSA	3.9e-25	77.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186180 PE=4 SV=1	[more]
A0A061F3D9_THECC	4.6e-18	60.26	Lorelei-like-gpi-anchored protein 1 OS=Theobroma cacao GN=TCM_047062 PE=4 SV=1	[more]
A0A0A0K362_CUCSA	1.3e-15	59.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186190 PE=4 SV=1	[more]
M0TTM6_MUSAM	3.6e-15	57.14	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
B9T0K5_RICCO	4.8e-15	57.14	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0302720 PE=4 SV=1	[more]

BLAST of Cla005586 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188866\|gb\|KGN44099.1\|	5.6e-25	77.92	hypothetical protein Csa_7G186180 [Cucumis sativus]	[more]
gi\|590604745\|ref\|XP_007020320.1\|	6.6e-18	60.26	Lorelei-like-gpi-anchored protein 1 [Theobroma cacao]	[more]
gi\|1009107807\|ref\|XP_015881557.1\|	4.7e-16	56.41	PREDICTED: GPI-anchored protein LORELEI [Ziziphus jujuba]	[more]
gi\|659093945\|ref\|XP_008447799.1\|	4.7e-16	60.81	PREDICTED: GPI-anchored protein LORELEI-like [Cucumis melo]	[more]
gi\|729356666\|ref\|XP_010545299.1\|	8.1e-16	54.55	PREDICTED: GPI-anchored protein LORELEI [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005586	Cla005586.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31533	FAMILY NOT NAMED	coord: 1..76 score: 4.3
None	No IPR available	PANTHER	PTHR31533:SF2	GPI-ANCHORED PROTEIN LORELEI-RELATED	coord: 1..76 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005586	Wax gourd	wgowmB581
Cla005586	Cucumber (Gy14) v1	cgywmB603
Cla005586	Cucurbita maxima (Rimu)	cmawmB009
Cla005586	Cucurbita maxima (Rimu)	cmawmB410
Cla005586	Cucurbita moschata (Rifu)	cmowmB001
Cla005586	Cucurbita moschata (Rifu)	cmowmB404
Cla005586	Wild cucumber (PI 183967)	cpiwmB588
Cla005586	Melon (DHL92) v3.5.1	mewmB188
Cla005586	Watermelon (Charleston Gray)	wcgwmB008
Cla005586	Cucumber (Chinese Long) v2	cuwmB569
Cla005586	Cucurbita pepo (Zucchini)	cpewmB531
Cla005586	Cucurbita pepo (Zucchini)	cpewmB753
Cla005586	Bottle gourd (USVL1VR-Ls)	lsiwmB177
Cla005586	Cucumber (Gy14) v2	cgybwmB532
Cla005586	Melon (DHL92) v3.6.1	medwmB184
Cla005586	Silver-seed gourd	carwmB0074
Cla005586	Silver-seed gourd	carwmB1034
Cla005586	Cucumber (Chinese Long) v3	cucwmB595
Cla005586	Watermelon (97103) v2	wmwmbB042