Cla005479 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005479
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Nuclear-pore anchor (AHRD V1 ***- NUA_ARATH)
Location	Chr9 : 34785555 .. 34786415 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCATTTATTCATCTCCGACGAGGAGTTCTCTCGGCACTCCAACGACGCCGCTTTTTTGGCCGAGAAGGCCGATGTCTTCATCCAAGGTCTCCGTAGCGAGCTCGAGACCGTCAGAGCCGAAGCTGATGCTGCTTCAATCACTGCGGAACAGACTTGTTCTCTTCTTGACCAGAAGTTCCTCTCTCTTTCTGCTGAGTTCTCTGACCTCCAGTCTCAGAATGCACAGCTTCAAACGACCCTCGAACTTAGACTCTCCGAGCTTGCCGAAGTCAAGTCCCAAAAACATCAACTCAATTTACTTTCCGTAAGAATACTATTTTTTCCCCTTTCACTCCATTCGTTTACGCACATGTAATGAAGCCCTCCATTTACACTGCCTTTTGTTAATATTGAATATTTCAAGCATTGGCTTCTTTGGTGCTTACAGATTGGGAAGGATGGGGAGATAGAGAGGTTAAATACAGAGTTATCTGAACTGCATAAATCAAAAAGGCAGCTGATGGAGCTTATCGAGCATAAGGACTTAGAAATTGGTGAAAAAGATTCCACTATAAAGAGTTATCTTGATAAGATTGTAAGTTCCTTTTACTTCTCCGACTTACCATCCATGTAATAAAATTTGTGGTATAAATTAACATTTCCACTTTCCTGCAAAAAATGTTTCTTTTTGATCGTCTTGAAGGTCAATTTGTCTGAGACAGCTGCTCAAAGAGAAGCCCGTATAAGTGAGGTTGACATGGAGTTAGTGCGCTCCCGGGCTGAATTCGCTCGTCTTTCACAGGTAATCGCTTCCTCATTATTGTCTAGTTTAACCTTCATTGAGAAACATACTGTTTGCCAAAGTGAGCTTGGCTAA

mRNA sequence

ATGGCGCATTTATTCATCTCCGACGAGGAGTTCTCTCGGCACTCCAACGACGCCGCTTTTTTGGCCGAGAAGGCCGATGTCTTCATCCAAGGTCTCCGTAGCGAGCTCGAGACCGTCAGAGCCGAAGCTGATGCTGCTTCAATCACTGCGGAACAGACTTGTTCTCTTCTTGACCAGAAGTTCCTCTCTCTTTCTGCTGAGTTCTCTGACCTCCAGTCTCAGAATGCACAGCTTCAAACGACCCTCGAACTTAGACTCTCCGAGCTTGCCGAAGTCAAGTCCCAAAAACATCAACTCAATTTACTTTCCATTGGGAAGGATGGGGAGATAGAGAGGTTAAATACAGAGTTATCTGAACTGCATAAATCAAAAAGGCAGCTGATGGAGCTTATCGAGCATAAGGACTTAGAAATTGGTGAAAAAGATTCCACTATAAAGAGTTATCTTGATAAGATTGTCAATTTGTCTGAGACAGCTGCTCAAAGAGAAGCCCGTATAAGTGAGGTTGACATGGAGTTAGTGCGCTCCCGGGCTGAATTCGCTCGTCTTTCACAGGTAATCGCTTCCTCATTATTGTCTAGTTTAACCTTCATTGAGAAACATACTGTTTGCCAAAGTGAGCTTGGCTAA

Coding sequence (CDS)

ATGGCGCATTTATTCATCTCCGACGAGGAGTTCTCTCGGCACTCCAACGACGCCGCTTTTTTGGCCGAGAAGGCCGATGTCTTCATCCAAGGTCTCCGTAGCGAGCTCGAGACCGTCAGAGCCGAAGCTGATGCTGCTTCAATCACTGCGGAACAGACTTGTTCTCTTCTTGACCAGAAGTTCCTCTCTCTTTCTGCTGAGTTCTCTGACCTCCAGTCTCAGAATGCACAGCTTCAAACGACCCTCGAACTTAGACTCTCCGAGCTTGCCGAAGTCAAGTCCCAAAAACATCAACTCAATTTACTTTCCATTGGGAAGGATGGGGAGATAGAGAGGTTAAATACAGAGTTATCTGAACTGCATAAATCAAAAAGGCAGCTGATGGAGCTTATCGAGCATAAGGACTTAGAAATTGGTGAAAAAGATTCCACTATAAAGAGTTATCTTGATAAGATTGTCAATTTGTCTGAGACAGCTGCTCAAAGAGAAGCCCGTATAAGTGAGGTTGACATGGAGTTAGTGCGCTCCCGGGCTGAATTCGCTCGTCTTTCACAGGTAATCGCTTCCTCATTATTGTCTAGTTTAACCTTCATTGAGAAACATACTGTTTGCCAAAGTGAGCTTGGCTAA

Protein sequence

MAHLFISDEEFSRHSNDAAFLAEKADVFIQGLRSELETVRAEADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSELHKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRAEFARLSQVIASSLLSSLTFIEKHTVCQSELG

Homology

[Close]

BLAST of Cla005479 vs. Swiss-Prot
Match: NUA_ARATH (Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.1e-58
Identity = 117/183 (63.93%), Postives = 155/183 (84.70%), Query Frame = 1


Query: 4   LFISDEEFSRHSNDAA-FLAEKADVFIQGLRSELETVRAEADAASITAEQTCSLLDQKFL 63
           LF+ DEE +R S+DAA  +AE+AD +I+ + +EL++VRA+ADAASITAEQTCSLL+QK+L
Sbjct: 3   LFMPDEELARLSSDAASVVAERADEYIRKIYAELDSVRAKADAASITAEQTCSLLEQKYL 62

Query: 64  SLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSELHK 123
           SLS +FS L+SQNA+LQ+  + RL+ELA+ ++QKHQL+L SI KDGE+ER++TE+SELHK
Sbjct: 63  SLSQDFSSLESQNAKLQSDFDDRLAELAQSQAQKHQLHLQSIEKDGEVERMSTEMSELHK 122

Query: 124 SKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRAEFAR 183
           SKRQLMEL+E KD EI EK+STIKSYLDKIV L++T++++EAR++E   EL RS+A  +R
Sbjct: 123 SKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLTDTSSEKEARLAEATAELARSQAMCSR 182

Query: 184 LSQ 186
           LSQ
Sbjct: 183 LSQ 185

[Close]

BLAST of Cla005479 vs. TrEMBL
Match: A0A0A0K927_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G251650 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.3e-91
Identity = 182/190 (95.79%), Postives = 187/190 (98.42%), Query Frame = 1


Query: 1   MAHLFISDEEFSRHSNDAAFLAEKADVFIQGLRSELETVRAEADAASITAEQTCSLLDQK 60
           MAHLFISDEEFSRHS+DAAFLAEKAD FIQGLRSELETVRA+ADAASITAEQTCSLLDQK
Sbjct: 1   MAHLFISDEEFSRHSDDAAFLAEKADAFIQGLRSELETVRAQADAASITAEQTCSLLDQK 60

Query: 61  FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL 120
           FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL
Sbjct: 61  FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL 120

Query: 121 HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRAEF 180
           HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRA+F
Sbjct: 121 HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRADF 180

Query: 181 ARLSQVIASS 191
           ARL+Q + SS
Sbjct: 181 ARLTQELCSS 190

[Close]

BLAST of Cla005479 vs. TrEMBL
Match: B9HI19_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08040g PE=4 SV=2)

HSP 1 Score: 250.8 bits (639), Expect = 1.5e-63
Identity = 128/183 (69.95%), Postives = 158/183 (86.34%), Query Frame = 1


Query: 3   HLFISDEEFSRHSNDAAFLAEKADVFIQGLRSELETVRAEADAASITAEQTCSLLDQKFL 62
           H+FI+D++ +RHSNDA+++A KAD FI+GL+SELE VRA ADAASITAEQTCSLL+QKFL
Sbjct: 2   HIFITDDDLARHSNDASYVAVKADEFIRGLQSELENVRAAADAASITAEQTCSLLEQKFL 61

Query: 63  SLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSELHK 122
           +LS EFS L+SQNAQLQ++L+ RLSELA+ ++QKHQL+L SIGKDGEIERL  E+SELHK
Sbjct: 62  ALSTEFSKLESQNAQLQSSLDDRLSELAQAQAQKHQLHLQSIGKDGEIERLTMEVSELHK 121

Query: 123 SKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRAEFAR 182
           SKRQL+EL+E KDLEI EK++T   YLDKIVNL++ AA REARISE++ EL RS+A   R
Sbjct: 122 SKRQLIELVEQKDLEISEKNATFNGYLDKIVNLTDRAANREARISELEAELARSQATCTR 181

Query: 183 LSQ 186
           L Q
Sbjct: 182 LLQ 184

[Close]

BLAST of Cla005479 vs. TrEMBL
Match: D7T103_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g01090 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.4e-63
Identity = 132/200 (66.00%), Postives = 165/200 (82.50%), Query Frame = 1


Query: 4   LFISDEEFSRHSNDAAFLAEKADVFIQGLRSELETVRAEADAASITAEQTCSLLDQKFLS 63
           LFISDEE+SR SND A +AEKAD FI+ L +EL+TV+A+ADAASITAEQTCSLL+QK++S
Sbjct: 3   LFISDEEYSRCSNDVALVAEKADSFIRDLYNELQTVKAQADAASITAEQTCSLLEQKYIS 62

Query: 64  LSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSELHKS 123
           LS EFS L+SQNAQL ++L+ RLSELA+++++KHQL+L SI KDGEIERL+TE SELHKS
Sbjct: 63  LSQEFSKLESQNAQLNSSLQERLSELAQIQAEKHQLHLKSIEKDGEIERLSTEESELHKS 122

Query: 124 KRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRAEFARL 183
           KRQL+E +EHKDLEI EK++TIKSYLDKIVN+++TAA REAR+S+ + EL RS+A  AR 
Sbjct: 123 KRQLLEFLEHKDLEISEKNATIKSYLDKIVNMTDTAALREARLSDAEAELSRSKAACAR- 182

Query: 184 SQVIASSLLSSLTFIEKHTV 204
                  LL     IE+H V
Sbjct: 183 -------LLQEKELIERHNV 194

[Close]

BLAST of Cla005479 vs. TrEMBL
Match: M5X5Z7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000061mg PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.3e-62
Identity = 129/200 (64.50%), Postives = 162/200 (81.00%), Query Frame = 1


Query: 4   LFISDEEFSRHSNDAAFLAEKADVFIQGLRSELETVRAEADAASITAEQTCSLLDQKFLS 63
           LF+SDE+FSRH NDA ++A+KAD FI+ L++ELET RA+ DAASITAEQTCSLL+QK+LS
Sbjct: 3   LFVSDEDFSRHGNDATWVADKADAFIRDLQTELETFRAQNDAASITAEQTCSLLEQKYLS 62

Query: 64  LSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSELHKS 123
           LS EFS L+SQ +QLQ++L+ RLSE+AE++SQKHQL+L SI KDGEIER  TE+SELHKS
Sbjct: 63  LSDEFSKLESQYSQLQSSLDHRLSEVAELQSQKHQLHLQSIEKDGEIERFKTEVSELHKS 122

Query: 124 KRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRAEFARL 183
           KRQL+EL+E KDLEI EK++TIKSY+D+IV  S+ AAQREAR+SE + EL R++A   RL
Sbjct: 123 KRQLIELVERKDLEISEKNATIKSYMDRIVYSSDNAAQREARLSEAEAELARTKASCTRL 182

Query: 184 SQVIASSLLSSLTFIEKHTV 204
           SQ            IE+H V
Sbjct: 183 SQ--------EKELIERHNV 194

[Close]

BLAST of Cla005479 vs. TrEMBL
Match: B9RYK2_RICCO (Nucleoprotein TPR, putative OS=Ricinus communis GN=RCOM_1128370 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.1e-61
Identity = 124/182 (68.13%), Postives = 155/182 (85.16%), Query Frame = 1


Query: 4   LFISDEEFSRHSNDAAFLAEKADVFIQGLRSELETVRAEADAASITAEQTCSLLDQKFLS 63
           LFISD+E +RHS D +F+A KAD +I+GL+++ ETV+A ADAA+ITAEQTCSLL+QKFLS
Sbjct: 3   LFISDDELARHSGDVSFVAAKADDYIKGLQADFETVKAAADAAAITAEQTCSLLEQKFLS 62

Query: 64  LSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSELHKS 123
           LS+EFS+L+SQNAQLQT+L+ RLSELAEV++QKHQL+L SI KDGE+ERL  E+SE+HKS
Sbjct: 63  LSSEFSNLESQNAQLQTSLDDRLSELAEVQAQKHQLHLQSIAKDGEVERLTMEVSEVHKS 122

Query: 124 KRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRAEFARL 183
           KRQL+EL+E KD EI EK+  I  YLDKIV L++ AAQ+E R+SEV+ EL R RA  ARL
Sbjct: 123 KRQLIELVERKDSEISEKNIIISGYLDKIVTLTDKAAQKETRLSEVEAELARERANSARL 182

Query: 184 SQ 186
           SQ
Sbjct: 183 SQ 184

[Close]

BLAST of Cla005479 vs. NCBI nr
Match: gi|700189073|gb|KGN44306.1| (hypothetical protein Csa_7G251650 [Cucumis sativus])

HSP 1 Score: 344.0 bits (881), Expect = 1.9e-91
Identity = 182/190 (95.79%), Postives = 187/190 (98.42%), Query Frame = 1


Query: 1   MAHLFISDEEFSRHSNDAAFLAEKADVFIQGLRSELETVRAEADAASITAEQTCSLLDQK 60
           MAHLFISDEEFSRHS+DAAFLAEKAD FIQGLRSELETVRA+ADAASITAEQTCSLLDQK
Sbjct: 1   MAHLFISDEEFSRHSDDAAFLAEKADAFIQGLRSELETVRAQADAASITAEQTCSLLDQK 60

Query: 61  FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL 120
           FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL
Sbjct: 61  FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL 120

Query: 121 HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRAEF 180
           HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRA+F
Sbjct: 121 HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRADF 180

Query: 181 ARLSQVIASS 191
           ARL+Q + SS
Sbjct: 181 ARLTQELCSS 190

[Close]

BLAST of Cla005479 vs. NCBI nr
Match: gi|778726103|ref|XP_011659056.1| (PREDICTED: nuclear-pore anchor isoform X1 [Cucumis sativus])

HSP 1 Score: 341.3 bits (874), Expect = 1.2e-90
Identity = 184/203 (90.64%), Postives = 189/203 (93.10%), Query Frame = 1


Query: 1   MAHLFISDEEFSRHSNDAAFLAEKADVFIQGLRSELETVRAEADAASITAEQTCSLLDQK 60
           MAHLFISDEEFSRHS+DAAFLAEKAD FIQGLRSELETVRA+ADAASITAEQTCSLLDQK
Sbjct: 1   MAHLFISDEEFSRHSDDAAFLAEKADAFIQGLRSELETVRAQADAASITAEQTCSLLDQK 60

Query: 61  FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL 120
           FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL
Sbjct: 61  FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL 120

Query: 121 HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRAEF 180
           HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRA+F
Sbjct: 121 HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRADF 180

Query: 181 ARLSQVIASSLLSSLTFIEKHTV 204
           ARL+Q            IE+H V
Sbjct: 181 ARLTQ--------EKELIERHNV 195

[Close]

BLAST of Cla005479 vs. NCBI nr
Match: gi|778726106|ref|XP_011659057.1| (PREDICTED: nuclear-pore anchor isoform X2 [Cucumis sativus])

HSP 1 Score: 341.3 bits (874), Expect = 1.2e-90
Identity = 184/203 (90.64%), Postives = 189/203 (93.10%), Query Frame = 1


Query: 1   MAHLFISDEEFSRHSNDAAFLAEKADVFIQGLRSELETVRAEADAASITAEQTCSLLDQK 60
           MAHLFISDEEFSRHS+DAAFLAEKAD FIQGLRSELETVRA+ADAASITAEQTCSLLDQK
Sbjct: 1   MAHLFISDEEFSRHSDDAAFLAEKADAFIQGLRSELETVRAQADAASITAEQTCSLLDQK 60

Query: 61  FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL 120
           FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL
Sbjct: 61  FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL 120

Query: 121 HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRAEF 180
           HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRA+F
Sbjct: 121 HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRADF 180

Query: 181 ARLSQVIASSLLSSLTFIEKHTV 204
           ARL+Q            IE+H V
Sbjct: 181 ARLTQ--------EKELIERHNV 195

[Close]

BLAST of Cla005479 vs. NCBI nr
Match: gi|778726110|ref|XP_011659058.1| (PREDICTED: nuclear-pore anchor isoform X3 [Cucumis sativus])

HSP 1 Score: 341.3 bits (874), Expect = 1.2e-90
Identity = 184/203 (90.64%), Postives = 189/203 (93.10%), Query Frame = 1


Query: 1   MAHLFISDEEFSRHSNDAAFLAEKADVFIQGLRSELETVRAEADAASITAEQTCSLLDQK 60
           MAHLFISDEEFSRHS+DAAFLAEKAD FIQGLRSELETVRA+ADAASITAEQTCSLLDQK
Sbjct: 1   MAHLFISDEEFSRHSDDAAFLAEKADAFIQGLRSELETVRAQADAASITAEQTCSLLDQK 60

Query: 61  FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL 120
           FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL
Sbjct: 61  FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL 120

Query: 121 HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRAEF 180
           HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRA+F
Sbjct: 121 HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRADF 180

Query: 181 ARLSQVIASSLLSSLTFIEKHTV 204
           ARL+Q            IE+H V
Sbjct: 181 ARLTQ--------EKELIERHNV 195

[Close]

BLAST of Cla005479 vs. NCBI nr
Match: gi|743782162|ref|XP_011012854.1| (PREDICTED: nuclear-pore anchor [Populus euphratica])

HSP 1 Score: 252.7 bits (644), Expect = 5.7e-64
Identity = 129/183 (70.49%), Postives = 158/183 (86.34%), Query Frame = 1


Query: 3   HLFISDEEFSRHSNDAAFLAEKADVFIQGLRSELETVRAEADAASITAEQTCSLLDQKFL 62
           H+FI+D++ +RHSNDA+++A KAD FI+GL+SELE VRA ADAASITAEQTCSLL+QKFL
Sbjct: 2   HIFITDDDLARHSNDASYVAAKADEFIRGLQSELENVRAAADAASITAEQTCSLLEQKFL 61

Query: 63  SLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSELHK 122
           +LS EFS L+SQNAQLQ++L+ RLSELA+ ++QKHQL+L SIGKDGEIERL  E+SELHK
Sbjct: 62  ALSTEFSKLESQNAQLQSSLDDRLSELAQAQAQKHQLHLQSIGKDGEIERLTMEVSELHK 121

Query: 123 SKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRAEFAR 182
           SKRQLMEL+E KDLEI EK++T   YLDKIVNL++ AA REARISE++ EL RS+A   R
Sbjct: 122 SKRQLMELVEQKDLEISEKNATFNGYLDKIVNLTDRAANREARISELEAELARSQATCTR 181

Query: 183 LSQ 186
           L Q
Sbjct: 182 LLQ 184

The following BLAST results are available for this feature:

BLAST of Cla005479 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NUA_ARATH	6.1e-58	63.93	Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1	[more]

BLAST of Cla005479 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K927_CUCSA	1.3e-91	95.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G251650 PE=4 SV=1	[more]
B9HI19_POPTR	1.5e-63	69.95	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08040g PE=4 SV=2	[more]
D7T103_VITVI	4.4e-63	66.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g01090 PE=4 SV=...	[more]
M5X5Z7_PRUPE	6.3e-62	64.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000061mg PE=4 SV=1	[more]
B9RYK2_RICCO	4.1e-61	68.13	Nucleoprotein TPR, putative OS=Ricinus communis GN=RCOM_1128370 PE=4 SV=1	[more]

BLAST of Cla005479 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189073\|gb\|KGN44306.1\|	1.9e-91	95.79	hypothetical protein Csa_7G251650 [Cucumis sativus]	[more]
gi\|778726103\|ref\|XP_011659056.1\|	1.2e-90	90.64	PREDICTED: nuclear-pore anchor isoform X1 [Cucumis sativus]	[more]
gi\|778726106\|ref\|XP_011659057.1\|	1.2e-90	90.64	PREDICTED: nuclear-pore anchor isoform X2 [Cucumis sativus]	[more]
gi\|778726110\|ref\|XP_011659058.1\|	1.2e-90	90.64	PREDICTED: nuclear-pore anchor isoform X3 [Cucumis sativus]	[more]
gi\|743782162\|ref\|XP_011012854.1\|	5.7e-64	70.49	PREDICTED: nuclear-pore anchor [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0008150	biological_process
biological_process	GO:0007094	mitotic spindle assembly checkpoint
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005487	nucleocytoplasmic transporter activity
molecular_function	GO:0017056	structural constituent of nuclear pore

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005479	Cla005479.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 110..130 score: -coord: 29..49 scor
None	No IPR available	PANTHER	PTHR18898	NUCLEOPROTEIN TPR-RELATED	coord: 1..185 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla005479	Cla97C09G184470	Watermelon (97103) v2	wmwmbB042
Cla005479	Csa7G251650	Cucumber (Chinese Long) v2	cuwmB552
Cla005479	ClCG09G022890	Watermelon (Charleston Gray)	wcgwmB008
Cla005479	CSPI07G11130	Wild cucumber (PI 183967)	cpiwmB570
Cla005479	Cucsa.240150	Cucumber (Gy14) v1	cgywmB453
Cla005479	CmaCh19G011230	Cucurbita maxima (Rimu)	cmawmB470
Cla005479	CmoCh19G011530	Cucurbita moschata (Rifu)	cmowmB463
Cla005479	Lsi11G015830	Bottle gourd (USVL1VR-Ls)	lsiwmB089
Cla005479	Cp4.1LG15g09050	Cucurbita pepo (Zucchini)	cpewmB234
Cla005479	CsGy7G010530	Cucumber (Gy14) v2	cgybwmB515
Cla005479	Carg15642	Silver-seed gourd	carwmB0528
Cla005479	CsaV3_7G023140	Cucumber (Chinese Long) v3	cucwmB578
Cla005479	Bhi05G001705	Wax gourd	wgowmB251

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005479	Melon (DHL92) v3.5.1	mewmB203
Cla005479	Melon (DHL92) v3.6.1	medwmB199