Cla005256 (gene) Watermelon (97103) v1

Overview
NameCla005256
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 27660892 .. 27661380 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATCGAGAATGCAAGTTCCAATTCTTCGATATATTTTACCAAATCTTCCATTTCATTATGAGAATCCTATCATCTAAAGCTCAAGAAACTGTTGTTCTTGGAAACCCGGTGTCGCATGAATCGAACGCTTCATCTCAAGAGCTCACAACTACTTTGAATTCAGAGCATTCTGCTTTGTCTCTCACGAACGGTCATCTCGAAGAACCAAAGGAGCTCGATTTGAGAAAAGAAAATGATAAGAATAATGATGATTTTGTATCGTTGCCTTCTACAACAAAACGAGCTCCAAAGAAAATTGTTAGTATCAATGAAAGAGTTGAGGATATTGATGCTATTATGAAGGAAAGGAGGAAGAGAAAAGGAACAAAGAAGTCAAAATCCTTTGATTTTGATAATGGATATGATGCTTCTTTAAAGCCTACTCGCTCCATTCTCAAGGTTGGCTCAATAAGAGATAACTCAGATTTATTAAAAACTCTTTGA

mRNA sequence

ATGGACAATCGAGAATGCAAGTTCCAATTCTTCGATATATTTTACCAAATCTTCCATTTCATTATGAGAATCCTATCATCTAAAGCTCAAGAAACTGTTGTTCTTGGAAACCCGGTGTCGCATGAATCGAACGCTTCATCTCAAGAGCTCACAACTACTTTGAATTCAGAGCATTCTGCTTTGTCTCTCACGAACGGTCATCTCGAAGAACCAAAGGAGCTCGATTTGAGAAAAGAAAATGATAAGAATAATGATGATTTTGTATCGTTGCCTTCTACAACAAAACGAGCTCCAAAGAAAATTGTTAGTATCAATGAAAGAGTTGAGGATATTGATGCTATTATGAAGGAAAGGAGGAAGAGAAAAGGAACAAAGAAGTCAAAATCCTTTGATTTTGATAATGGATATGATGCTTCTTTAAAGCCTACTCGCTCCATTCTCAAGGTTGGCTCAATAAGAGATAACTCAGATTTATTAAAAACTCTTTGA

Coding sequence (CDS)

ATGGACAATCGAGAATGCAAGTTCCAATTCTTCGATATATTTTACCAAATCTTCCATTTCATTATGAGAATCCTATCATCTAAAGCTCAAGAAACTGTTGTTCTTGGAAACCCGGTGTCGCATGAATCGAACGCTTCATCTCAAGAGCTCACAACTACTTTGAATTCAGAGCATTCTGCTTTGTCTCTCACGAACGGTCATCTCGAAGAACCAAAGGAGCTCGATTTGAGAAAAGAAAATGATAAGAATAATGATGATTTTGTATCGTTGCCTTCTACAACAAAACGAGCTCCAAAGAAAATTGTTAGTATCAATGAAAGAGTTGAGGATATTGATGCTATTATGAAGGAAAGGAGGAAGAGAAAAGGAACAAAGAAGTCAAAATCCTTTGATTTTGATAATGGATATGATGCTTCTTTAAAGCCTACTCGCTCCATTCTCAAGGTTGGCTCAATAAGAGATAACTCAGATTTATTAAAAACTCTTTGA

Protein sequence

MDNRECKFQFFDIFYQIFHFIMRILSSKAQETVVLGNPVSHESNASSQELTTTLNSEHSALSLTNGHLEEPKELDLRKENDKNNDDFVSLPSTTKRAPKKIVSINERVEDIDAIMKERRKRKGTKKSKSFDFDNGYDASLKPTRSILKVGSIRDNSDLLKTL
Homology
[Close]
BLAST of Cla005256 vs. TrEMBL
Match: A0A0A0LYJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G570780 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.4e-61
Identity = 132/188 (70.21%), Postives = 142/188 (75.53%), Query Frame = 1 

Query: 1   MDNRECKFQFFDIFYQIFHFIMRILSSKAQETVVLGNPVSHESNASSQELTTTLNSEHSA 60
           MDNR+ KFQFFDIFYQIFHFIMRILSSKA+E V LGN V HE NASS ELTT+ NSEHS 
Sbjct: 1   MDNRQSKFQFFDIFYQIFHFIMRILSSKAREIVTLGNSVPHEPNASSHELTTSSNSEHST 60

Query: 61  LSLTNGHLEE---------------------------PKELDLRKENDKNNDDFVSLPST 120
            SLTN HL+E                           PKE+DLRKENDK +DDFVSLPST
Sbjct: 61  SSLTNDHLKETNKSQELATTLKSDHSDSPLTNDHLKEPKEIDLRKENDKKSDDFVSLPST 120

Query: 121 TKRAPKKIVSINERVEDIDAIMKERRKRKGTKKSKSFDFDNGYDASLKPTRSILKVGSIR 162
           TKRAPKK+VSINERVEDID+IMKERRK+KG K SKSFDFDN YDASLKP RSILKVGSI+
Sbjct: 121 TKRAPKKMVSINERVEDIDSIMKERRKKKGIK-SKSFDFDNEYDASLKPIRSILKVGSIK 180

[Close]
BLAST of Cla005256 vs. TrEMBL
Match: I1JRF7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G240500 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-09
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1 

Query: 1   MDNRECKFQFFDIFYQIFHFIMRILSSKAQETVVLGNPVSHESNASSQELTTT---LNSE 60
           MD RE       I Y++++FIM+ L+S+A +TV LG    + S+++  E+T      N+E
Sbjct: 1   MDQRELNL---GICYRLYNFIMKTLASQAMKTVTLGRSSHYSSSSTEVEITQRGFGTNTE 60

Query: 61  HSALSLTNGHLEEPKELDLRKENDKNNDDFVSLPSTTKRAPKKIVSINERVEDIDAIMKE 120
              L+ T     E K +  R   + N D+ V +      APKK+VSIN+ VE+I  I+  
Sbjct: 61  KMVLAETPC---EEKNIPCR---NNNIDEKVLMVGDLPHAPKKMVSINDNVEEI--ILPS 120

Query: 121 RRKRKGTKKSKSFDFDNGYDASLKPTRSILKVGS 152
           +++ K  ++S S D         KP RSILKVG+
Sbjct: 121 KKRSKTFQESNSLD----QQEHPKPLRSILKVGA 139

[Close]
BLAST of Cla005256 vs. TrEMBL
Match: A0A0B2P8L6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_022704 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-09
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1 

Query: 1   MDNRECKFQFFDIFYQIFHFIMRILSSKAQETVVLGNPVSHESNASSQELTTT---LNSE 60
           MD RE       I Y++++FIM+ L+S+A +TV LG    + S+++  E+T      N+E
Sbjct: 1   MDQRELNL---GICYRLYNFIMKTLASQAMKTVTLGRSSHYSSSSTEVEITQRGFGTNTE 60

Query: 61  HSALSLTNGHLEEPKELDLRKENDKNNDDFVSLPSTTKRAPKKIVSINERVEDIDAIMKE 120
              L+ T     E K +  R   + N D+ V +      APKK+VSIN+ VE+I  I+  
Sbjct: 61  KMVLAETPC---EEKNIPCR---NNNIDEKVLMVGDLPHAPKKMVSINDNVEEI--ILPS 120

Query: 121 RRKRKGTKKSKSFDFDNGYDASLKPTRSILKVGS 152
           +++ K  ++S S D         KP RSILKVG+
Sbjct: 121 KKRSKTFQESNSLD----QQEHPKPLRSILKVGA 139

[Close]
BLAST of Cla005256 vs. TrEMBL
Match: A0A067JHY1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23389 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 59/178 (33.15%), Postives = 91/178 (51.12%), Query Frame = 1 

Query: 1   MDNRECKFQFFDIFYQIFHFIMRILSSKAQETVVLGNPVSHESNASS------------- 60
           MD RE +FQ   I  ++++F+ + L+  A ++V LG+P+ H++ A +             
Sbjct: 1   MDQREDQFQTKGICSRLYNFMTKTLAIYALKSVKLGHPL-HKNFARARTRPPCNSDLMVQ 60

Query: 61  ---QELTT------TLNSEHSA-----LSLTNGHLEEPKELDLRKENDKNNDDFVSLPST 120
              QE T       TLN ++S       S  NG  +E KEL   +EN+ N +        
Sbjct: 61  PVTQEETPFEGVEQTLNIKNSDPFFPNSSSINGLKQEGKELQEVQENNSNFNG----EKI 120

Query: 121 TKRAPKKIVSINERVEDIDAIMKERRKRKGTKKSKSFDFDNGYDASLKPTRSILKVGS 152
             + PKK+VSIN+RVE+ID   K  R++K  +   SF+ +   +   KP +SILKVGS
Sbjct: 121 EAKVPKKVVSINDRVEEIDTSKKRIRRKKSKENLTSFEQE---EEEPKPLKSILKVGS 170

[Close]
BLAST of Cla005256 vs. TrEMBL
Match: A0A151TW58_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_010505 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.0e-08
Identity = 56/151 (37.09%), Postives = 79/151 (52.32%), Query Frame = 1 

Query: 1   MDNRECKFQFFDIFYQIFHFIMRILSSKAQETVVLGNPVSHESNASSQELTTTLNSEHSA 60
           M+ RE      +I Y+++HFIM+ L+S+A +TV LG    H S+++  E+T        +
Sbjct: 1   MEQRELHL---NICYKLYHFIMKTLASQAMKTVTLGARSHHGSSSTEVEIT----QREES 60

Query: 61  LSLTNGHLEEPKELDLRKENDKNNDDFVSLPSTTKRAPKKIVSINERVEDIDAIMKERRK 120
           ++  N +++E    DL             LP    RAPKKIVSIN+ VE+I +       
Sbjct: 61  VACRNINIDENVVGDL-------------LP----RAPKKIVSINDNVEEIIS------- 116

Query: 121 RKGTKKSKSFDFDNGYDASLKPTRSILKVGS 152
             G K+SK F  D   D   KP RSILKVGS
Sbjct: 121 -TGKKRSKLF-MDQQEDP--KPLRSILKVGS 116

[Close]
BLAST of Cla005256 vs. NCBI nr
Match: gi|700211008|gb|KGN66104.1| (hypothetical protein Csa_1G570780 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 3.5e-61
Identity = 132/188 (70.21%), Postives = 142/188 (75.53%), Query Frame = 1 

Query: 1   MDNRECKFQFFDIFYQIFHFIMRILSSKAQETVVLGNPVSHESNASSQELTTTLNSEHSA 60
           MDNR+ KFQFFDIFYQIFHFIMRILSSKA+E V LGN V HE NASS ELTT+ NSEHS 
Sbjct: 1   MDNRQSKFQFFDIFYQIFHFIMRILSSKAREIVTLGNSVPHEPNASSHELTTSSNSEHST 60

Query: 61  LSLTNGHLEE---------------------------PKELDLRKENDKNNDDFVSLPST 120
            SLTN HL+E                           PKE+DLRKENDK +DDFVSLPST
Sbjct: 61  SSLTNDHLKETNKSQELATTLKSDHSDSPLTNDHLKEPKEIDLRKENDKKSDDFVSLPST 120

Query: 121 TKRAPKKIVSINERVEDIDAIMKERRKRKGTKKSKSFDFDNGYDASLKPTRSILKVGSIR 162
           TKRAPKK+VSINERVEDID+IMKERRK+KG K SKSFDFDN YDASLKP RSILKVGSI+
Sbjct: 121 TKRAPKKMVSINERVEDIDSIMKERRKKKGIK-SKSFDFDNEYDASLKPIRSILKVGSIK 180

[Close]
BLAST of Cla005256 vs. NCBI nr
Match: gi|571447025|ref|XP_006577258.1| (PREDICTED: uncharacterized protein LOC100777942 [Glycine max])

HSP 1 Score: 69.7 bits (169), Expect = 5.3e-09
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1 

Query: 1   MDNRECKFQFFDIFYQIFHFIMRILSSKAQETVVLGNPVSHESNASSQELTTT---LNSE 60
           MD RE       I Y++++FIM+ L+S+A +TV LG    + S+++  E+T      N+E
Sbjct: 1   MDQRELNL---GICYRLYNFIMKTLASQAMKTVTLGRSSHYSSSSTEVEITQRGFGTNTE 60

Query: 61  HSALSLTNGHLEEPKELDLRKENDKNNDDFVSLPSTTKRAPKKIVSINERVEDIDAIMKE 120
              L+ T     E K +  R   + N D+ V +      APKK+VSIN+ VE+I  I+  
Sbjct: 61  KMVLAETPC---EEKNIPCR---NNNIDEKVLMVGDLPHAPKKMVSINDNVEEI--ILPS 120

Query: 121 RRKRKGTKKSKSFDFDNGYDASLKPTRSILKVGS 152
           +++ K  ++S S D         KP RSILKVG+
Sbjct: 121 KKRSKTFQESNSLD----QQEHPKPLRSILKVGA 139

[Close]
BLAST of Cla005256 vs. NCBI nr
Match: gi|802757116|ref|XP_012089118.1| (PREDICTED: uncharacterized protein LOC105647588 [Jatropha curcas])

HSP 1 Score: 67.8 bits (164), Expect = 2.0e-08
Identity = 59/178 (33.15%), Postives = 91/178 (51.12%), Query Frame = 1 

Query: 1   MDNRECKFQFFDIFYQIFHFIMRILSSKAQETVVLGNPVSHESNASS------------- 60
           MD RE +FQ   I  ++++F+ + L+  A ++V LG+P+ H++ A +             
Sbjct: 1   MDQREDQFQTKGICSRLYNFMTKTLAIYALKSVKLGHPL-HKNFARARTRPPCNSDLMVQ 60

Query: 61  ---QELTT------TLNSEHSA-----LSLTNGHLEEPKELDLRKENDKNNDDFVSLPST 120
              QE T       TLN ++S       S  NG  +E KEL   +EN+ N +        
Sbjct: 61  PVTQEETPFEGVEQTLNIKNSDPFFPNSSSINGLKQEGKELQEVQENNSNFNG----EKI 120

Query: 121 TKRAPKKIVSINERVEDIDAIMKERRKRKGTKKSKSFDFDNGYDASLKPTRSILKVGS 152
             + PKK+VSIN+RVE+ID   K  R++K  +   SF+ +   +   KP +SILKVGS
Sbjct: 121 EAKVPKKVVSINDRVEEIDTSKKRIRRKKSKENLTSFEQE---EEEPKPLKSILKVGS 170

[Close]
BLAST of Cla005256 vs. NCBI nr
Match: gi|828303433|ref|XP_012569853.1| (PREDICTED: uncharacterized protein LOC105851864 [Cicer arietinum])

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = 1 

Query: 1   MDNRECKFQFFDIFYQIFHFIMRILSSKAQETVVLGNPVSHESNASSQELTTT--LNSEH 60
           MD RE   Q   I Y+++HFI + L+S+  +TV LG    + S +++   + T   +   
Sbjct: 1   MDQREIHLQNMGICYKLYHFITKTLASQVLKTVTLGCSTHYSSTSTAPRGSETPYEDGND 60

Query: 61  SALSLTNGHL----------EEPKELDLRKENDKNNDDFVSLPST---TKRAPKKIVSIN 120
              S T G L           + K+   +  ++K  ++  +LP+T    + + +K+VSIN
Sbjct: 61  KEFSHTQGLLCDSIYSPAQQAQHKDTPCKNIDEKVRENTTTLPTTPLPKRISLRKVVSIN 120

Query: 121 ERVEDIDAIMKERRKRKGTKKSKSFDFDNGYDASLKPTRSILKVGS 152
           + VE+I    K +R+ K  +KS S D     +   +P RSILKVGS
Sbjct: 121 DNVEEILPGKKNKRRIKSFQKSSSLD----QEEEPEPLRSILKVGS 162

[Close]
BLAST of Cla005256 vs. NCBI nr
Match: gi|1012360072|gb|KYP71256.1| (hypothetical protein KK1_010505 [Cajanus cajan])

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 56/151 (37.09%), Postives = 79/151 (52.32%), Query Frame = 1 

Query: 1   MDNRECKFQFFDIFYQIFHFIMRILSSKAQETVVLGNPVSHESNASSQELTTTLNSEHSA 60
           M+ RE      +I Y+++HFIM+ L+S+A +TV LG    H S+++  E+T        +
Sbjct: 1   MEQRELHL---NICYKLYHFIMKTLASQAMKTVTLGARSHHGSSSTEVEIT----QREES 60

Query: 61  LSLTNGHLEEPKELDLRKENDKNNDDFVSLPSTTKRAPKKIVSINERVEDIDAIMKERRK 120
           ++  N +++E    DL             LP    RAPKKIVSIN+ VE+I +       
Sbjct: 61  VACRNINIDENVVGDL-------------LP----RAPKKIVSINDNVEEIIS------- 116

Query: 121 RKGTKKSKSFDFDNGYDASLKPTRSILKVGS 152
             G K+SK F  D   D   KP RSILKVGS
Sbjct: 121 -TGKKRSKLF-MDQQEDP--KPLRSILKVGS 116

The following BLAST results are available for this feature:
BLAST of Cla005256 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYJ0_CUCSA2.4e-6170.21Uncharacterized protein OS=Cucumis sativus GN=Csa_1G570780 PE=4 SV=1[more]
I1JRF7_SOYBN3.7e-0935.06Uncharacterized protein OS=Glycine max GN=GLYMA_03G240500 PE=4 SV=1[more]
A0A0B2P8L6_GLYSO3.7e-0935.06Uncharacterized protein OS=Glycine soja GN=glysoja_022704 PE=4 SV=1[more]
A0A067JHY1_JATCU1.4e-0833.15Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23389 PE=4 SV=1[more]
A0A151TW58_CAJCA7.0e-0837.09Uncharacterized protein OS=Cajanus cajan GN=KK1_010505 PE=4 SV=1[more]
BLAST of Cla005256 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211008|gb|KGN66104.1|3.5e-6170.21hypothetical protein Csa_1G570780 [Cucumis sativus][more]
gi|571447025|ref|XP_006577258.1|5.3e-0935.06PREDICTED: uncharacterized protein LOC100777942 [Glycine max][more]
gi|802757116|ref|XP_012089118.1|2.0e-0833.15PREDICTED: uncharacterized protein LOC105647588 [Jatropha curcas][more]
gi|828303433|ref|XP_012569853.1|3.4e-0830.72PREDICTED: uncharacterized protein LOC105851864 [Cicer arietinum][more]
gi|1012360072|gb|KYP71256.1|1.0e-0737.09hypothetical protein KK1_010505 [Cajanus cajan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla005256Cla005256.1mRNA