Cla005155 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005155
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr3 : 28613703 .. 28614135 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGGAGGCAGATTATCTCCAACCATAGGTCTATACTGCAACCATACTCAGCTCCTTTATTTGCTAGATTCTTTTCTAAATCTACCCCATATGTTGGTAAGTGGTTTTTCTCCGTCTTAGTTTCTAAGACTTTATTCTTATCTTGATTGAACCTTATGCTTAATTTGGTTTCTGGAATATGGAAAGTAAACTGACTTAGGTTATTCTGTCAGCCAAAAAGTGAAGCGAAGGAATGTATAGTTTACTCAATGGTTGTGTGAATAGACATGGAAATGGAGTTTATTTGTTATCTCTTTGTTGAATGAATTTATGGCAGACTTGTTTGGTGCTTTTGTGGGGAGTAATCTGAGAGGAATTTTGGGAATAATCCTAAAGGGGTTGATAGGTCTTCAGGGGTGGGTGGGACTTGTGGGAGGATGTGAGATTTAA

mRNA sequence

ATGGCATGGAGGCAGATTATCTCCAACCATAGGTCTATACTGCAACCATACTCAGCTCCTTTATTTGCTAGATTCTTTTCTAAATCTACCCCATATGTTGACTTGTTTGGTGCTTTTGTGGGGAGTAATCTGAGAGGAATTTTGGGAATAATCCTAAAGGGGTTGATAGGTCTTCAGGGGTGGGTGGGACTTGTGGGAGGATGTGAGATTTAA

Coding sequence (CDS)

ATGGCATGGAGGCAGATTATCTCCAACCATAGGTCTATACTGCAACCATACTCAGCTCCTTTATTTGCTAGATTCTTTTCTAAATCTACCCCATATGTTGACTTGTTTGGTGCTTTTGTGGGGAGTAATCTGAGAGGAATTTTGGGAATAATCCTAAAGGGGTTGATAGGTCTTCAGGGGTGGGTGGGACTTGTGGGAGGATGTGAGATTTAA

Protein sequence

MAWRQIISNHRSILQPYSAPLFARFFSKSTPYVDLFGAFVGSNLRGILGIILKGLIGLQGWVGLVGGCEI

Homology

[Close]

BLAST of Cla005155 vs. TrEMBL
Match: A0A0A0M1A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555610 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.9e-09
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1


Query: 1  MAWRQIISNHRSILQPYSAPLFARFFSKSTPYV 34
          MAWR I+SNHRSILQPYSAPLFARFFSKS+PY+
Sbjct: 2  MAWRNIVSNHRSILQPYSAPLFARFFSKSSPYI 34

[Close]

BLAST of Cla005155 vs. NCBI nr
Match: gi|449435566|ref|XP_004135566.1| (PREDICTED: uncharacterized protein LOC101215337 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1


Query: 1  MAWRQIISNHRSILQPYSAPLFARFFSKSTPYV 34
          MAWR I+SNHRSILQPYSAPLFARFFSKS+PY+
Sbjct: 2  MAWRNIVSNHRSILQPYSAPLFARFFSKSSPYI 34

[Close]

BLAST of Cla005155 vs. NCBI nr
Match: gi|659099308|ref|XP_008450534.1| (PREDICTED: uncharacterized protein LOC103492108 [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 1  MAWRQIISNHRSILQPYSAPLFARFFSKSTPYV 34
          MAW+ IISNHRSILQPYSA LFARFFSKS+PY+
Sbjct: 1  MAWKNIISNHRSILQPYSASLFARFFSKSSPYI 33

The following BLAST results are available for this feature:

BLAST of Cla005155 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1A4_CUCSA	7.9e-09	87.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555610 PE=4 SV=1	[more]

BLAST of Cla005155 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435566\|ref\|XP_004135566.1\|	1.1e-08	87.88	PREDICTED: uncharacterized protein LOC101215337 [Cucumis sativus]	[more]
gi\|659099308\|ref\|XP_008450534.1\|	1.6e-07	84.85	PREDICTED: uncharacterized protein LOC103492108 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004177	aminopeptidase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU39457	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU46879	watermelon EST collection version 2.0	transcribed_cluster
WMU60004	watermelon EST collection version 2.0	transcribed_cluster
WMU76796	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005155	Cla005155.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU39457	WMU39457	transcribed_cluster
WMU60004	WMU60004	transcribed_cluster
WMU46879	WMU46879	transcribed_cluster
WMU76796	WMU76796	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla005155	Cla97C03G068170	Watermelon (97103) v2	wmwmbB125
Cla005155	Csa1G555610	Cucumber (Chinese Long) v2	cuwmB013
Cla005155	MELO3C015252	Melon (DHL92) v3.5.1	mewmB272
Cla005155	ClCG03G017770	Watermelon (Charleston Gray)	wcgwmB224
Cla005155	CSPI01G25500	Wild cucumber (PI 183967)	cpiwmB015
Cla005155	Cucsa.050800	Cucumber (Gy14) v1	cgywmB034
Cla005155	CmaCh10G011650	Cucurbita maxima (Rimu)	cmawmB047
Cla005155	CmoCh10G012430	Cucurbita moschata (Rifu)	cmowmB038
Cla005155	CsGy1G024870	Cucumber (Gy14) v2	cgybwmB016
Cla005155	MELO3C015252.2	Melon (DHL92) v3.6.1	medwmB263
Cla005155	CsaV3_1G037920	Cucumber (Chinese Long) v3	cucwmB018
Cla005155	Bhi02G001824	Wax gourd	wgowmB654

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005155	Watermelon (97103) v1	wmwmB091
Cla005155	Cucumber (Gy14) v1	cgywmB035
Cla005155	Cucurbita maxima (Rimu)	cmawmB101
Cla005155	Cucurbita moschata (Rifu)	cmowmB090
Cla005155	Cucumber (Chinese Long) v2	cuwmB024
Cla005155	Cucumber (Chinese Long) v2	cuwmB115
Cla005155	Cucurbita pepo (Zucchini)	cpewmB104
Cla005155	Cucurbita pepo (Zucchini)	cpewmB357
Cla005155	Cucurbita pepo (Zucchini)	cpewmB648
Cla005155	Bottle gourd (USVL1VR-Ls)	lsiwmB094
Cla005155	Bottle gourd (USVL1VR-Ls)	lsiwmB396
Cla005155	Cucumber (Gy14) v2	cgybwmB026
Cla005155	Cucumber (Chinese Long) v3	cucwmB028