Cla004842 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004842
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 11582451 .. 11583873 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAATACAGAAACTGGTGGCTGTCAAAACATGGGAGTTATTTTGAGGATAACATTCATCAACTAGTAAGTAATGTTATTCCTCCTCCATCGCAACCCCGACTACCTAGGAACAAAGAGGCCAACCAAGGTGGCAAACAACTTCGTCTTATCAAAGAAGCGATTTGTACCTCTCAAGACAATGATGTGACTCATGCGGAAGGGAGTCACAATAGTACCAATGATCATCATTGTAAGAGACCCCCGAAGAAGGTGAAAGCATCCTGTGATAATTTTTTTGAATGCATTCCAAGTGCTTCAGGACACCCTAATGTTACTATACCATTGGTATGTATGCTCTCTTCTCAAGTTCTCTTCATTCTCTTCTTTACCAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGTCTCCCTTGAGTTCTCACCTTCAAGAGCTTGCGAAGCCGAACAATGAAGAATCTTTAATGGGACCTTATAATTTGGATTCATCCATGGATAAGGTCGGTACTTCTACATTACCGGCAGCTAAAACAATTGAACCATCCTTACGACCTTGTGCTATTTTAGAAGACATTCGATGCGGCAAAGAGAAAGTAGGTATTGAGAGTGTTGGAGTTTTAACCTCTCCACTTGAAGAAGTCGGTTGTTCTAAAGCCCTCTTCATAGAGAAAACCATGCCCCCTCCTGGTCCGCTCAAAATTTCGGAACCGACCTAACGCGTCTGCAAAGAACCGAATGTTGGGAATCCTGAGGCTTCTCTATACTGCGGCGATGTAGTAGTTTCAAGTTTTTATCGACAAGCAGCGCTATCCCTTTGGGAAAGTATTTGGGATAAGACTGTGCGTACTTCATTTGAATAGGTTCCGTATCTCAGATCGAAAGTCACGAAGGTATTCTCTGGTATTTCGAAGGTTCATGCAGAGAATTTGACTCTACTTCAAGAGTTTATGGACAATTATCTTAAGAGGGTGGAAAATTTCAATGCGCTACAATCCTCGTATTCCGTACAATTATCTTCAATTGACAAAGATCATCAACTGGGAGAGAAAACATCTCGCATGAAAGAAACCCTCACTTTGATTGACCAACTACGAGAAGAGGATAAAACCAATTGAGAGCGAGCTGCATAGTTAGCCTCAGAAAAAAAAAAAAGAATTAGAAGTCAGACTTCAAAAGGTCGATACCGAATATGGGAAGCTTTTGAGTTTGTGTGGTGAGAAGAAGGAGGCCTTAGGTAGGAGGGAACTTGAAGTCGCCAAGATGCAAGAAGAAATCAATACTCTTGAGAGCACTCCTACTATAACCGATGAAGGTGTCGAGGCTTTCGCTACAATTCGGGATAACATGGAAACTGCACGCGAAGAGTTAAAGAACTTCAAGTGGAGGCTTTGA

mRNA sequence

ATGTCTCAATACAGAAACTGGTGGCTGTCAAAACATGGGAGTTATTTTGAGGATAACATTCATCAACTAGTAAGTAATGTTATTCCTCCTCCATCGCAACCCCGACTACCTAGGAACAAAGAGGCCAACCAAGGTGGCAAACAACTTCGTCTTATCAAAGAAGCGATTTGTACCTCTCAAGACAATGATGTGACTCATGCGGAAGGGAGTCACAATAGTACCAATGATCATCATTGTAAGAGACCCCCGAAGAAGGTGAAAGCATCCTGTGATAATTTTTTTGAATGCATTCCAAGTGCTTCAGGACACCCTAATGTTACTATACCATTGTCTCCCTTGAGTTCTCACCTTCAAGAGCTTGCGAAGCCGAACAATGAAGAATCTTTAATGGGACCTTATAATTTGGATTCATCCATGGATAAGGTCGGTACTTCTACATTACCGGCAGCTAAAACAATTGAACCATCCTTACGACCTTGTGCTATTTTAGAAGACATTCGATGCGGCAAAGAGAAAGTAGGTATTGAGAGTGTTGGAGTTTTAACCTCTCCACTTGAAGAAGTCGGTTGTTCTAAAGCCCTCTTCATAGAGAAAACCATGCCCCCTCCTGAATTAGAAGTCAGACTTCAAAAGGTCGATACCGAATATGGGAAGCTTTTGAGTTTGTGTGGTGAGAAGAAGGAGGCCTTAGGTAGGAGGGAACTTGAAGTCGCCAAGATGCAAGAAGAAATCAATACTCTTGAGAGCACTCCTACTATAACCGATGAAGGTGTCGAGGCTTTCGCTACAATTCGGGATAACATGGAAACTGCACGCGAAGAGTTAAAGAACTTCAAGTGGAGGCTTTGA

Coding sequence (CDS)

ATGTCTCAATACAGAAACTGGTGGCTGTCAAAACATGGGAGTTATTTTGAGGATAACATTCATCAACTAGTAAGTAATGTTATTCCTCCTCCATCGCAACCCCGACTACCTAGGAACAAAGAGGCCAACCAAGGTGGCAAACAACTTCGTCTTATCAAAGAAGCGATTTGTACCTCTCAAGACAATGATGTGACTCATGCGGAAGGGAGTCACAATAGTACCAATGATCATCATTGTAAGAGACCCCCGAAGAAGGTGAAAGCATCCTGTGATAATTTTTTTGAATGCATTCCAAGTGCTTCAGGACACCCTAATGTTACTATACCATTGTCTCCCTTGAGTTCTCACCTTCAAGAGCTTGCGAAGCCGAACAATGAAGAATCTTTAATGGGACCTTATAATTTGGATTCATCCATGGATAAGGTCGGTACTTCTACATTACCGGCAGCTAAAACAATTGAACCATCCTTACGACCTTGTGCTATTTTAGAAGACATTCGATGCGGCAAAGAGAAAGTAGGTATTGAGAGTGTTGGAGTTTTAACCTCTCCACTTGAAGAAGTCGGTTGTTCTAAAGCCCTCTTCATAGAGAAAACCATGCCCCCTCCTGAATTAGAAGTCAGACTTCAAAAGGTCGATACCGAATATGGGAAGCTTTTGAGTTTGTGTGGTGAGAAGAAGGAGGCCTTAGGTAGGAGGGAACTTGAAGTCGCCAAGATGCAAGAAGAAATCAATACTCTTGAGAGCACTCCTACTATAACCGATGAAGGTGTCGAGGCTTTCGCTACAATTCGGGATAACATGGAAACTGCACGCGAAGAGTTAAAGAACTTCAAGTGGAGGCTTTGA

Protein sequence

MSQYRNWWLSKHGSYFEDNIHQLVSNVIPPPSQPRLPRNKEANQGGKQLRLIKEAICTSQDNDVTHAEGSHNSTNDHHCKRPPKKVKASCDNFFECIPSASGHPNVTIPLSPLSSHLQELAKPNNEESLMGPYNLDSSMDKVGTSTLPAAKTIEPSLRPCAILEDIRCGKEKVGIESVGVLTSPLEEVGCSKALFIEKTMPPPELEVRLQKVDTEYGKLLSLCGEKKEALGRRELEVAKMQEEINTLESTPTITDEGVEAFATIRDNMETAREELKNFKWRL

Homology

[Close]

BLAST of Cla004842 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.3e-27
Identity = 70/172 (40.70%), Postives = 100/172 (58.14%), Query Frame = 1


Query: 3   QYRNWWLSKHGSYFEDNIHQLVSNVIPPPSQPRLPRNKEANQGGKQLRLIKEAICTSQDN 62
           ++ +WW +KH +YFEDN H LVS+ I PPSQPRLP+N+ +N GGK++ L++      ++ 
Sbjct: 292 RFTDWWTTKHMTYFEDNRHHLVSSAISPPSQPRLPKNRGSNLGGKEIGLVEAMAPNLEEE 351

Query: 63  DVTHAEGSHNSTNDHHCKRPPKKVKASCDNFFECIPSASGHPNVTIPLSPLSSHLQELAK 122
              H + S +S +D H KRP KK K S D           HP+              L +
Sbjct: 352 VKEHKDESDSSKSDRHWKRPLKKAKVSGD-----------HPD----------WFARLIE 411

Query: 123 PNNEESLMGPYNLDSSMDKVGTSTLPAAKTIEPSLRPCAILEDIRCGKEKVG 175
           P+++ESL GP+ +DS+ ++VGTS  P  K  E SL P A+ E+IR GK  VG
Sbjct: 412 PDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVG 442

[Close]

BLAST of Cla004842 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.2e-16
Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = 1


Query: 197 EKTMPPPELEVRLQKVDTEYGKLLSLCGEKKEALGRRELEVAKMQEEINTLESTPTITDE 256
           E ++   ELE RL  ++ E+ +L  L  EK EA+ ++ELEV  +Q+E+NTLESTP IT E
Sbjct: 616 ELSLERKELEKRLWSINAEFEQLSILSCEKAEAIDQQELEVFMLQDEVNTLESTPAITKE 675

Query: 257 GVEAFATIRDNMETAREELKNFKWRL 283
            ++A AT+R +ME AREE KNFKWRL
Sbjct: 676 AIKALATVRQSMEVAREEFKNFKWRL 701

HSP 2 Score: 66.2 bits (160), Expect = 7.1e-08
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 1


Query: 85  KVKASCDNFFECIPSASGHPNVTIPLSPLSSHLQELAKPNNEESLMGPYNLDSSMDKVGT 144
           K K S DN  E   SA   PNV  PLSPL  HL+ L   +++ESL GP+  D++++KVG 
Sbjct: 2   KAKVSGDNSCERGSSAMRIPNVP-PLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI 61

Query: 145 STLPAAKTIEPSLRPCAILEDIR 168
              PAAK +E SL   A+LE IR
Sbjct: 62  LKTPAAKPVELSLHLSALLEKIR 83

[Close]

BLAST of Cla004842 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 131.0 bits (328), Expect = 3.4e-27
Identity = 70/172 (40.70%), Postives = 100/172 (58.14%), Query Frame = 1


Query: 3   QYRNWWLSKHGSYFEDNIHQLVSNVIPPPSQPRLPRNKEANQGGKQLRLIKEAICTSQDN 62
           ++ +WW +KH +YFEDN H LVS+ I PPSQPRLP+N+ +N GGK++ L++      ++ 
Sbjct: 292 RFTDWWTTKHMTYFEDNRHHLVSSAISPPSQPRLPKNRGSNLGGKEIGLVEAMAPNLEEE 351

Query: 63  DVTHAEGSHNSTNDHHCKRPPKKVKASCDNFFECIPSASGHPNVTIPLSPLSSHLQELAK 122
              H + S +S +D H KRP KK K S D           HP+              L +
Sbjct: 352 VKEHKDESDSSKSDRHWKRPLKKAKVSGD-----------HPD----------WFARLIE 411

Query: 123 PNNEESLMGPYNLDSSMDKVGTSTLPAAKTIEPSLRPCAILEDIRCGKEKVG 175
           P+++ESL GP+ +DS+ ++VGTS  P  K  E SL P A+ E+IR GK  VG
Sbjct: 412 PDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVG 442

[Close]

BLAST of Cla004842 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 93.6 bits (231), Expect = 6.0e-16
Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = 1


Query: 197 EKTMPPPELEVRLQKVDTEYGKLLSLCGEKKEALGRRELEVAKMQEEINTLESTPTITDE 256
           E ++   ELE RL  ++ E+ +L  L  EK EA+ ++ELEV  +Q+E+NTLESTP IT E
Sbjct: 616 ELSLERKELEKRLWSINAEFEQLSILSCEKAEAIDQQELEVFMLQDEVNTLESTPAITKE 675

Query: 257 GVEAFATIRDNMETAREELKNFKWRL 283
            ++A AT+R +ME AREE KNFKWRL
Sbjct: 676 AIKALATVRQSMEVAREEFKNFKWRL 701

HSP 2 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 86/345 (24.93%), Postives = 148/345 (42.90%), Query Frame = 1


Query: 2   SQYRNWWLSKHGSYFEDNIHQLVSNVIPPPSQPRLPRNKEAN------------------ 61
           S Y+ WWL+KHG Y ++ +  L+    PP  + +  +  E N                  
Sbjct: 365 SHYKVWWLAKHGDYLQEGVQHLIDRPTPPHIKSKTTKKIEHNFGSGIQKICSDETDERLV 424

Query: 62  ---QGG-KQL-----------RLIKEAICT-SQDNDVTHA--------EGSHNSTNDHHC 121
              +GG K+L            LIK  I    +DN ++ A        E + +S +D H 
Sbjct: 425 EKIEGGTKRLVDNLSLSTRFKHLIKGGIDNVGKDNRLSIAAKRPSKRIENNQSSNDDRHW 484

Query: 122 KRPPKKVKASCDNFFECIPSASGHPNVTIPLS-PLSSHLQELAKPNNEESLMGPYNLDSS 181
           KRP K  K S D+    I S+ G  ++ I  +    S+L++        +++  YN ++S
Sbjct: 485 KRPKKPNKQSIDDEESPIRSSLGDYDLHIKGTLETMSNLEDC-------NVVLSYN-ENS 544

Query: 182 MDKVGTSTLPAAKTI---EPSLRPCAILEDIRCGKEKVGIESVGVLTSPLEEVGCSKA-- 241
              +G + + A   +    P      + E++R    +   E +  L   + ++  + A  
Sbjct: 545 KKPIGANIVSARPLVIKGPPQKTAITLWENLRQKIIRTPFERLSSLEPEMHKIFDAIATS 604

Query: 242 ----------LFIE-----KTMPPPELEVRLQKVDTEYGKLLSLCGE--KKEA-LGRREL 281
                     LF E     KT+   E  + L + +T   +L  L  +  K EA L  ++ 
Sbjct: 605 DNNNLIVLTELFTEAKGFVKTLRVDENRI-LAETNTAKRRLTRLSAKEAKLEAKLKMKQH 664

[Close]

BLAST of Cla004842 vs. NCBI nr
Match: gi|700188832|gb|KGN44065.1| (hypothetical protein Csa_7G160510 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-07
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 1


Query: 85  KVKASCDNFFECIPSASGHPNVTIPLSPLSSHLQELAKPNNEESLMGPYNLDSSMDKVGT 144
           K K S DN  E   SA   PNV  PLSPL  HL+ L   +++ESL GP+  D++++KVG 
Sbjct: 2   KAKVSGDNSCERGSSAMRIPNVP-PLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI 61

Query: 145 STLPAAKTIEPSLRPCAILEDIR 168
              PAAK +E SL   A+LE IR
Sbjct: 62  LKTPAAKPVELSLHLSALLEKIR 83

The following BLAST results are available for this feature:

BLAST of Cla004842 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB9_CUCME	2.3e-27	40.70	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB9_CUCME	4.2e-16	53.49	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla004842 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136292\|gb\|ADN34118.1\|	3.4e-27	40.70	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|307136292\|gb\|ADN34118.1\|	6.0e-16	53.49	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700188832\|gb\|KGN44065.1\|	1.0e-07	48.19	hypothetical protein Csa_7G160510 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004842	Cla004842.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 230..250 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004842	Cucumber (Gy14) v2	cgybwmB271
Cla004842	Melon (DHL92) v3.6.1	medwmB480
Cla004842	Melon (DHL92) v3.6.1	medwmB481
Cla004842	Silver-seed gourd	carwmB0939
Cla004842	Silver-seed gourd	carwmB1015
Cla004842	Cucumber (Chinese Long) v3	cucwmB303
Cla004842	Watermelon (97103) v2	wmwmbB059
Cla004842	Wax gourd	wgowmB029
Cla004842	Cucurbita maxima (Rimu)	cmawmB296
Cla004842	Cucurbita maxima (Rimu)	cmawmB654
Cla004842	Cucurbita moschata (Rifu)	cmowmB290
Cla004842	Cucurbita moschata (Rifu)	cmowmB649
Cla004842	Wild cucumber (PI 183967)	cpiwmB295
Cla004842	Melon (DHL92) v3.5.1	mewmB494
Cla004842	Watermelon (Charleston Gray)	wcgwmB059
Cla004842	Cucumber (Chinese Long) v2	cuwmB294
Cla004842	Cucurbita pepo (Zucchini)	cpewmB206
Cla004842	Cucurbita pepo (Zucchini)	cpewmB383
Cla004842	Bottle gourd (USVL1VR-Ls)	lsiwmB241