Cla004839 (gene) Watermelon (97103) v1

Overview
NameCla004839
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionF-box family protein (AHRD V1 ***- D7M7Q4_ARALL); contains Interpro domain(s) IPR001810 Cyclin-like F-box
LocationChr10 : 11456995 .. 11458371 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATTGTGATAGCCGACGCTGGGATGAGCTATTCCCTGATGCACTGGGTCTCATATTTAGGAATTTGTCACTCCAAGAGATACTTGTTGTAATTCCAAGGGTTTGCAAGTCATGGAGAAAAACAGTGTTGGGGCCTTACTGCTGGCAGGAGATAGACATTATGGATTGGAGTGTACTTCGAGATCCTGATAGCGTTAATAAAATGCTTCAATTGTTGATGTCAAGGAGCTCTGGTTACCTTCGCAAGCTTTGCATTAGTTGTCTCCCTAATGACTCTAGTTTGTCCCTGATTGCAGAACAGTGAGTCCAATAATAACCCTCTGTTCTTGTTTACTTCTTTAATGCACTATTGTTTCAGCTACTCCTGTTTCATTATACTAGTTCAGATTTATCTTCCATCTTTGAAGATCAATGTTTAGGAATTATATTGTTTGGTCAAATGACTGCTAAAACTATGACTTTTGATTAGGCCTTTTCTTTTAAGTGCTGTACAATGGAATGGTCAAGTTTGGCAGAAAAATTTCTATTGTTCTTTAGATGAGTGGAAAAAAATATAAATATTCATCTTCCAAGTTTGTAGTTTCAACCTGGAGGAGCAGAGGGTTTAAAATGTCTATAGAGAAATTTGGAGTGAGGGTTGAAAACAACATCGCAAGCTTGGAATCATGTACTAAGTTGTGTTTAAATCCTAGTATGCTTGAATGTGTCTATTTTCTGTAGATTAAAATATCTTACATTCCTGATTGACAGTGGCAAAGCTCTTCATACTCTACGGGTACCAAGAAGCGAAATAACAAATTCAATTGTAGAACAGGTTGCTGAGAGGCTTTCTGCTGTAACTTTTTTGGATTTAAGCTTTTGTAAAAACATTGGGGCACCCGCCCTTGAGGCGATTGGGAAGCATTGTGCGAATCTCACAGGGTTGCGTAGAGTTATGTGCCCTTTTGAAGCCATTGGTAGGTCTTCTCAAGATGACGAGGCTCTTGCAGTTGCATCAACAATGCATAAGCTTAAGCAGCTCGAGATAGCCTATTTGCTTATCAATACTGAATCAGTGCTAAAAATCCTCGAGAACTGCCCAGAGCTTGAGTATTTAGATGTGCAAGGGTGTTGGAATGTGATACTAGATGAAAAGTTCAAGAAGTTTTCGAAAGTGAAGTTGGTCGGTCCATTGGAAGAGTTTTCAGAGACAATCAGATGGGATGGTTGCTCAAATTCTTCTGGCTACTTGACTTGGGATTTTGTGGCTGATGAATTAGATGATCAATTTGAAATGCTGGAGTTTCTGGGGGAAGATTACAGAAGTGTGGATGATGAGGGGCATGCTTTTGAGGAGCATATTTATACTGATTGGCTTGAGGGATCTCCTTGA

mRNA sequence

ATGGAGGATTGTGATAGCCGACGCTGGGATGAGCTATTCCCTGATGCACTGGGTCTCATATTTAGGAATTTGTCACTCCAAGAGATACTTGTTGTAATTCCAAGGGTTTGCAAGTCATGGAGAAAAACAGTGTTGGGGCCTTACTGCTGGCAGGAGATAGACATTATGGATTGGAGTGTACTTCGAGATCCTGATAGCGTTAATAAAATGCTTCAATTGTTGATGTCAAGGAGCTCTGGTTACCTTCGCAAGCTTTGCATTAGTTGTCTCCCTAATGACTCTAGTTTGTCCCTGATTGCAGAACATGGCAAAGCTCTTCATACTCTACGGGTACCAAGAAGCGAAATAACAAATTCAATTGTAGAACAGGTTGCTGAGAGGCTTTCTGCTGTAACTTTTTTGGATTTAAGCTTTTGTAAAAACATTGGGGCACCCGCCCTTGAGGCGATTGGGAAGCATTGTGCGAATCTCACAGGGTTGCGTAGAGTTATGTGCCCTTTTGAAGCCATTGGTAGGTCTTCTCAAGATGACGAGGCTCTTGCAGTTGCATCAACAATGCATAAGCTTAAGCAGCTCGAGATAGCCTATTTGCTTATCAATACTGAATCAGTGCTAAAAATCCTCGAGAACTGCCCAGAGCTTGAGTATTTAGATGTGCAAGGGTGTTGGAATGTGATACTAGATGAAAAGTTCAAGAAGTTTTCGAAAGTGAAGTTGGTCGGTCCATTGGAAGAGTTTTCAGAGACAATCAGATGGGATGGTTGCTCAAATTCTTCTGGCTACTTGACTTGGGATTTTGTGGCTGATGAATTAGATGATCAATTTGAAATGCTGGAGTTTCTGGGGGAAGATTACAGAAGTGTGGATGATGAGGGGCATGCTTTTGAGGAGCATATTTATACTGATTGGCTTGAGGGATCTCCTTGA

Coding sequence (CDS)

ATGGAGGATTGTGATAGCCGACGCTGGGATGAGCTATTCCCTGATGCACTGGGTCTCATATTTAGGAATTTGTCACTCCAAGAGATACTTGTTGTAATTCCAAGGGTTTGCAAGTCATGGAGAAAAACAGTGTTGGGGCCTTACTGCTGGCAGGAGATAGACATTATGGATTGGAGTGTACTTCGAGATCCTGATAGCGTTAATAAAATGCTTCAATTGTTGATGTCAAGGAGCTCTGGTTACCTTCGCAAGCTTTGCATTAGTTGTCTCCCTAATGACTCTAGTTTGTCCCTGATTGCAGAACATGGCAAAGCTCTTCATACTCTACGGGTACCAAGAAGCGAAATAACAAATTCAATTGTAGAACAGGTTGCTGAGAGGCTTTCTGCTGTAACTTTTTTGGATTTAAGCTTTTGTAAAAACATTGGGGCACCCGCCCTTGAGGCGATTGGGAAGCATTGTGCGAATCTCACAGGGTTGCGTAGAGTTATGTGCCCTTTTGAAGCCATTGGTAGGTCTTCTCAAGATGACGAGGCTCTTGCAGTTGCATCAACAATGCATAAGCTTAAGCAGCTCGAGATAGCCTATTTGCTTATCAATACTGAATCAGTGCTAAAAATCCTCGAGAACTGCCCAGAGCTTGAGTATTTAGATGTGCAAGGGTGTTGGAATGTGATACTAGATGAAAAGTTCAAGAAGTTTTCGAAAGTGAAGTTGGTCGGTCCATTGGAAGAGTTTTCAGAGACAATCAGATGGGATGGTTGCTCAAATTCTTCTGGCTACTTGACTTGGGATTTTGTGGCTGATGAATTAGATGATCAATTTGAAATGCTGGAGTTTCTGGGGGAAGATTACAGAAGTGTGGATGATGAGGGGCATGCTTTTGAGGAGCATATTTATACTGATTGGCTTGAGGGATCTCCTTGA

Protein sequence

MEDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSVLRDPDSVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRSEITNSIVEQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDEALAVASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVILDEKFKKFSKVKLVGPLEEFSETIRWDGCSNSSGYLTWDFVADELDDQFEMLEFLGEDYRSVDDEGHAFEEHIYTDWLEGSP
Homology
[Close]
BLAST of Cla004839 vs. Swiss-Prot
Match: FBW2_ARATH (F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.2e-75
Identity = 154/311 (49.52%), Postives = 206/311 (66.24%), Query Frame = 1 

Query: 2   EDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSV- 61
           EDC+ R WDEL PDALGLIF +L LQE+L V+PRVCK+W + V GPYCWQEIDI  WS  
Sbjct: 3   EDCEFRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNR 62

Query: 62  LRDPDSVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRSEITNSI 121
               D +++ML++L+ RS+G LRKL ++ L NDS  S IA+H  +L TL+VPRS +TNS 
Sbjct: 63  FHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSGLTNSG 122

Query: 122 VEQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDEAL 181
           V  VAE+LS++TFLDLS+C  IG  A++AIGKHC +L    R M P +     S DDEA 
Sbjct: 123 VVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAY 182

Query: 182 AVASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVILDEKF--KKFSKVK 241
           A+A+TM KLK+LEIAY  ++TE VLKIL  C  LE+L+++GCW+V LD KF  +KF  +K
Sbjct: 183 AIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMK 242

Query: 242 LVGP-LEEFSETIR-WDGC-----SNSSGYLTWDFVADELDDQFEMLEFLGEDYRSVDDE 301
           ++GP +  F + I  W+ C     S+ S YL W+F  D +         +GE Y   D+ 
Sbjct: 243 VLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFFEDGV---------MGEFYE--DEF 302

Query: 302 GHAFEEHIYTD 303
            H ++++ Y +
Sbjct: 303 EHGWDDNFYAE 302

[Close]
BLAST of Cla004839 vs. Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.6e-22
Identity = 86/280 (30.71%), Postives = 133/280 (47.50%), Query Frame = 1 

Query: 1   MEDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSV 60
           ME  +S  W EL P+    I   L   EIL    +VC+SWR+    P  W++ID+ +   
Sbjct: 11  MEVGESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGD 70

Query: 61  LRDPD-SVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPR-SEITN 120
           L D D ++  M +  + RS G L  + I        L+ IA     L +LR+ R S+IT+
Sbjct: 71  LDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITD 130

Query: 121 SIVEQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDE 180
               +   +L  +  L+LS+C +    +L  +G+ C N+  L+    P     +   DD+
Sbjct: 131 DGFVEAVVKLP-LEELELSYC-SFSVESLRVVGQCCLNMKTLKLNKHP-----QKENDDD 190

Query: 181 ALAVASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVIL--DEKFKKFSK 240
           ALA+A TM KL+ L++    ++   +  IL+NC  LE+LD++ C+NV L  D + + F  
Sbjct: 191 ALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFES 250

Query: 241 VKLVGPLEEFSETIRWDGCSNSSGYLTWDFVADELDDQFE 277
           VK+V    +    I      +   Y   D      DD FE
Sbjct: 251 VKVVRHPNDSIHDIDIGSSEDEDPYDFSDIDLMSGDDDFE 283

[Close]
BLAST of Cla004839 vs. Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.4e-18
Identity = 71/244 (29.10%), Postives = 116/244 (47.54%), Query Frame = 1 

Query: 1   MEDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDI---MD 60
           M+D   R W EL       I   L   EIL    +VCK W +    P  W++IDI    D
Sbjct: 173 MKDKKLRNWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRND 232

Query: 61  WSVLRDPDSVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRS-EI 120
            +  +    +  M +  + RS G L ++ I     +  +  IA+    L +L + R   I
Sbjct: 233 RAAFKY--DLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPI 292

Query: 121 TNSIVEQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQD 180
           T+  V +   ++  + +L++S+C   G  +L  IG+ C NL  L+    P      S  D
Sbjct: 293 TDEGVAKAVSKVPLLEYLEVSYCLFSGE-SLRDIGRSCPNLKTLKLNRAPEIMFSNSGFD 352

Query: 181 DEALAVASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVIL--DEKFKKF 239
           D A A+A +M +L+ L++    +  + +  IL+ CP LE+LD++ C+N+ L  D K + F
Sbjct: 353 DNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGDLKKRCF 412


HSP 2 Score: 44.3 bits (103), Expect = 2.8e-03
Identity = 33/109 (30.28%), Postives = 60/109 (55.05%), Query Frame = 1 

Query: 176 DDEALAVASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNV-ILDEKFKKF 235
           DDE LA+A TM +L+ L++    +    +  IL+NC  L +LD++ C+N+ +L +  K+ 
Sbjct: 19  DDEPLAIAETMPELRHLKLFGNGLTNLRLEAILDNCVHLVHLDLRRCFNINLLGDLEKRC 78

Query: 236 S-KVKLVGPLEEFSETIRWDGCSN--SSGYLTWDFVADE----LDDQFE 277
           S +++ +   ++ +    +D  S+  S+G   +DF +D+    L D FE
Sbjct: 79  SERIRDLRRPDDSTADSPFDASSDIYSAGEDDYDFYSDDSDGTLSDHFE 127

[Close]
BLAST of Cla004839 vs. Swiss-Prot
Match: SKIP1_ARATH (F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.4e-18
Identity = 75/257 (29.18%), Postives = 119/257 (46.30%), Query Frame = 1 

Query: 5   DSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDW------ 64
           D   W  L P+ L  I   L++QE+      V KSW      PY W   D+  W      
Sbjct: 4   DGSDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYPE 63

Query: 65  -SVLRDPD---SVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRS 124
            + L  P+    V+ ML+ ++  S G L K+ +    +D +LS  A+    L  L +  S
Sbjct: 64  STHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIRSS 123

Query: 125 -EITNSIVEQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMC-------- 184
             +T++ + ++A R  ++  LD+S+C  I    L  IG++C NL  L+R +         
Sbjct: 124 PNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIG 183

Query: 185 --PFEAIGRSSQDD--EALAVASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQG 239
             P E +    QD   EA A+   M  L+ LEI +  ++ + +  I E CP+LEYLD+ G
Sbjct: 184 SVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFG 243

[Close]
BLAST of Cla004839 vs. Swiss-Prot
Match: FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-16
Identity = 68/221 (30.77%), Postives = 105/221 (47.51%), Query Frame = 1 

Query: 9   WDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSVLRDPDSVN 68
           W EL PD L  I   LS  EIL    +VC+SWR+    P  W+ ID+ +   L    ++ 
Sbjct: 27  WAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCIYAME 86

Query: 69  KMLQLLMSRSSGYLRKLCISC--LPNDSSLSLIAEHGKALHTLRVPRSEITNSIVEQVAE 128
              + ++  S G L +  I        S L+ +AE    L  LRV   +IT+  + +   
Sbjct: 87  ACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRLRVKGGQITSVGIFEAIV 146

Query: 129 RLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDEALAVASTM 188
           +L  +  L+L +C +I     + IG+ C NL  L+ V         +  D++ALA+A TM
Sbjct: 147 KLPLLEELELLYC-SIEEEHFKTIGQACPNLKTLKLVGFWSHL---NESDNDALAIADTM 206

Query: 189 HKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVIL 228
             L  L++    +    +  IL+ CP LE LD++ C+N+ L
Sbjct: 207 PGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINL 243

[Close]
BLAST of Cla004839 vs. TrEMBL
Match: A0A0A0L0J6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G096100 PE=4 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 2.6e-152
Identity = 267/307 (86.97%), Postives = 286/307 (93.16%), Query Frame = 1 

Query: 1   MEDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSV 60
           MEDC SRRWDELFPDALGLIF+NLSLQE+LVVIPRVCKSWR+TVLGPYCWQEIDIMDWS+
Sbjct: 1   MEDCGSRRWDELFPDALGLIFKNLSLQELLVVIPRVCKSWRETVLGPYCWQEIDIMDWSL 60

Query: 61  LRDPDSVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRSEITNSI 120
           LRDP SV  MLQLL+SRSSGYL KLCIS LPNDSSLSLIA+HGKALHTLRVPRSEITNS 
Sbjct: 61  LRDPVSVITMLQLLISRSSGYLHKLCISSLPNDSSLSLIAKHGKALHTLRVPRSEITNST 120

Query: 121 VEQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDEAL 180
           VEQVA++LSAVTFLDLSFCKNIGAPALEAIGKHC NL GLRRVMCPFEAI RSSQDDEA+
Sbjct: 121 VEQVADKLSAVTFLDLSFCKNIGAPALEAIGKHCVNLIGLRRVMCPFEAIDRSSQDDEAI 180

Query: 181 AVASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVILDEKFKKFSKVKLV 240
           A+ASTMHK+KQLEIAYLLINTESVLKILENCP+LEYLDVQGCW+VILDE+FKKFSKVKL+
Sbjct: 181 AIASTMHKVKQLEIAYLLINTESVLKILENCPQLEYLDVQGCWHVILDERFKKFSKVKLI 240

Query: 241 GPLEEFSETIRWDGCSNSSGYLTWDFVADELDDQFEMLEFLGEDYRSVDDEGHAFEEHIY 300
           GPLEEFSETIRWDG S+SS YL W+FVADELDDQF+MLEFLGEDY SVDD     EEH+Y
Sbjct: 241 GPLEEFSETIRWDGYSDSSSYLVWEFVADELDDQFDMLEFLGEDYTSVDD-----EEHVY 300

Query: 301 TDWLEGS 308
            DWLE S
Sbjct: 301 PDWLEES 302

[Close]
BLAST of Cla004839 vs. TrEMBL
Match: A0A061DJC8_THECC (F-box with wd-40 2 isoform 1 OS=Theobroma cacao GN=TCM_001074 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 1.7e-100
Identity = 189/295 (64.07%), Postives = 238/295 (80.68%), Query Frame = 1 

Query: 2   EDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSVL 61
           ED + R WDEL PDALGLIF+NLSLQEIL VIPRVCKSWR+ V GPYCWQ+IDI  WS  
Sbjct: 3   EDGEIRHWDELIPDALGLIFKNLSLQEILTVIPRVCKSWRRAVTGPYCWQDIDIEQWSQH 62

Query: 62  RDPDSVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRSEITNSIV 121
             P+++++MLQ+L++RSSG LRKLC++ LPND S S IA++ K+L TLR+PRSEI++++V
Sbjct: 63  CLPETLDRMLQMLINRSSGSLRKLCVTGLPNDRSFSFIADNAKSLQTLRLPRSEISDAVV 122

Query: 122 EQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDEALA 181
           EQVA +LS+VTFLD+S+C+NIGAPALEAIGKHC +L GLRR M P E I + SQDDEALA
Sbjct: 123 EQVAGKLSSVTFLDVSYCRNIGAPALEAIGKHCKSLMGLRRTMHPLEVIDKQSQDDEALA 182

Query: 182 VASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVILDEKF-KKFSKVKLV 241
           +A+TM KLKQLE+AYLLI+TE VLKILENCP+LE LDV+GCWNV LD+ F KKFS++K+V
Sbjct: 183 IATTMPKLKQLEMAYLLISTEGVLKILENCPKLELLDVRGCWNVKLDDNFVKKFSRLKVV 242

Query: 242 GPL-EEFSETIRWDGCSN---SSGYLTWDFVADELD-DQFEMLEFLGEDYRSVDD 291
           GPL  ++     WD CSN   SSGYL WDF+A ++  D  E+ +   ED +S++D
Sbjct: 243 GPLVVDYFGMKGWDDCSNYSGSSGYLAWDFIAGDVGVDYDEISDGDWEDDQSMED 297

[Close]
BLAST of Cla004839 vs. TrEMBL
Match: A0A0B0MJ50_GOSAR (F-box FBW2-like protein OS=Gossypium arboreum GN=F383_19029 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 5.1e-100
Identity = 190/298 (63.76%), Postives = 237/298 (79.53%), Query Frame = 1 

Query: 2   EDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSVL 61
           ED + R WDEL PDALGLIF+NLSLQEIL VIPRVCKSW++ V GPYCWQ+IDI  WS  
Sbjct: 3   EDGEFRCWDELIPDALGLIFKNLSLQEILTVIPRVCKSWQRAVSGPYCWQDIDIEQWSQQ 62

Query: 62  RDPDSVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRSEITNSIV 121
             P+++++MLQ+L++RSSG LRKLC++ LPN  S S IA++ K+L TLR+PRSEI++S+V
Sbjct: 63  CRPETLDRMLQMLITRSSGSLRKLCVTGLPNSQSFSFIADNAKSLRTLRLPRSEISDSVV 122

Query: 122 EQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDEALA 181
           EQVA RLS+VTFLD+S+C+NIGAPALEAIGKHC  L GLRR M P E +G+ SQDDEALA
Sbjct: 123 EQVAGRLSSVTFLDVSYCRNIGAPALEAIGKHCKLLMGLRRTMHPLEVVGKLSQDDEALA 182

Query: 182 VASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVILDEKF-KKFSKVKLV 241
           +A+TM KLKQLE+AYLLI+TE V+KILENCPELE LDV+GCWNV LDE   KKFS++K+V
Sbjct: 183 IATTMPKLKQLEVAYLLISTEGVVKILENCPELELLDVRGCWNVKLDENLVKKFSRLKVV 242

Query: 242 GPL-EEFSETIRWDGCSN---SSGYLTWDFVADEL----DDQFEMLEFLGEDYRSVDD 291
           GPL  ++     WD CSN   SSGYL WDFVA ++    DD    +++  ED +S++D
Sbjct: 243 GPLVVDYFGMKGWDDCSNYSGSSGYLAWDFVAGDVGIGYDDVISDVDW--EDDQSIED 298

[Close]
BLAST of Cla004839 vs. TrEMBL
Match: A0A0D2MJ12_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G040600 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.5e-99
Identity = 190/298 (63.76%), Postives = 235/298 (78.86%), Query Frame = 1 

Query: 2   EDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSVL 61
           ED + R WDEL PDALGLIF NLSLQEIL VIPRVCKSW++ V GPYCWQ+IDI  WS  
Sbjct: 3   EDGEFRCWDELIPDALGLIFNNLSLQEILTVIPRVCKSWQRAVSGPYCWQDIDIEQWSQQ 62

Query: 62  RDPDSVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRSEITNSIV 121
             P+++++MLQ+L++RSSG LRKLC++ LPN  S S IA++ K+L TLR+PRSEI +S+V
Sbjct: 63  CRPETLDRMLQMLITRSSGSLRKLCVTGLPNGQSFSFIADNAKSLRTLRLPRSEINDSVV 122

Query: 122 EQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDEALA 181
           EQVA RLS+VTFLD+S+C+NIGAPALEAIGKHC  L GLRR M P E +G+ SQDDEALA
Sbjct: 123 EQVAGRLSSVTFLDVSYCRNIGAPALEAIGKHCKLLMGLRRTMHPLEVVGKLSQDDEALA 182

Query: 182 VASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVILDEKF-KKFSKVKLV 241
           +A+TM KLKQLE+AYLLI+TE V+KILENCPELE LDV+GCWNV LDE   KKFS++K+V
Sbjct: 183 IATTMPKLKQLEVAYLLISTEGVVKILENCPELELLDVRGCWNVKLDENLVKKFSRLKVV 242

Query: 242 GPL-EEFSETIRWDGCSN---SSGYLTWDFVADEL----DDQFEMLEFLGEDYRSVDD 291
           GPL  ++     WD CSN   SSGYL WDFVA ++    DD    +++  ED +S++D
Sbjct: 243 GPLVVDYFGMKGWDDCSNYSGSSGYLAWDFVAGDVGIDYDDVISDVDW--EDDQSIED 298

[Close]
BLAST of Cla004839 vs. TrEMBL
Match: D7TG22_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0391g00040 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 5.6e-99
Identity = 188/294 (63.95%), Postives = 231/294 (78.57%), Query Frame = 1 

Query: 2   EDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSVL 61
           E C+ R WDEL PDALGLIF NLSLQEIL VIPRVCKSWRKTV+GPYCWQEIDI++WS  
Sbjct: 3   EGCEFRSWDELIPDALGLIFSNLSLQEILTVIPRVCKSWRKTVMGPYCWQEIDIVEWSQR 62

Query: 62  RDPDSVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRSEITNSIV 121
             P+++++ML++LM+RS+G  RKLC+S LP D+S S +A+H K+L TLR+PRSEI++ IV
Sbjct: 63  SSPENLDRMLEMLMTRSAGSHRKLCVSGLPTDASFSFVADHAKSLQTLRLPRSEISDPIV 122

Query: 122 EQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDEALA 181
           E+VA +LS +TFLD+S+C+ +GAPALEAIGKHC  LTGLRR+M P E I + +QDDEALA
Sbjct: 123 EEVAWKLSTITFLDVSYCRKMGAPALEAIGKHCKFLTGLRRIMHPLEIIDKLTQDDEALA 182

Query: 182 VASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVILDEK-FKKFSKVKLV 241
           +A+TM KLK LEIAYLL++TE VLKIL +C ELE LDV+GCWNV LDEK  KKFS +K+V
Sbjct: 183 IAATMPKLKHLEIAYLLVSTEPVLKILASCCELELLDVRGCWNVKLDEKLIKKFSGLKVV 242

Query: 242 GPLE-EFSETIRWDGC---SNSSGYLTWDFVADELDDQFEMLEFLGEDYRSVDD 291
           GPL  +  E   WD C   S SSGYL WDFVA E+D   + L    ED  S+DD
Sbjct: 243 GPLVIDCYEGNGWDDCSAYSGSSGYLAWDFVAGEMDYYDDELYAAWED-ESMDD 295

[Close]
BLAST of Cla004839 vs. NCBI nr
Match: gi|659111194|ref|XP_008455627.1| (PREDICTED: F-box protein FBW2-like [Cucumis melo])

HSP 1 Score: 561.6 bits (1446), Expect = 8.4e-157
Identity = 273/308 (88.64%), Postives = 289/308 (93.83%), Query Frame = 1 

Query: 1   MEDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSV 60
           MEDC SRRWDELFPDALGLIF+NLSLQEILVVIPRVCKSWR+TVLGPYCWQEIDIMDWS+
Sbjct: 1   MEDCGSRRWDELFPDALGLIFKNLSLQEILVVIPRVCKSWRETVLGPYCWQEIDIMDWSL 60

Query: 61  LRDPDSVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRSEITNSI 120
           LRD  SVN MLQLL+SRSSGYLRKLCIS LPNDSSLSLIA++GK LHTLRVPRSEITNS 
Sbjct: 61  LRDAVSVNTMLQLLISRSSGYLRKLCISSLPNDSSLSLIAKYGKVLHTLRVPRSEITNST 120

Query: 121 VEQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDEAL 180
           VEQVA+RLSAVTFLDLSFCKNIGAPALEAIGKHC NL GLRRVMCPFEAI RSSQDDEAL
Sbjct: 121 VEQVADRLSAVTFLDLSFCKNIGAPALEAIGKHCVNLIGLRRVMCPFEAIDRSSQDDEAL 180

Query: 181 AVASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVILDEKFKKFSKVKLV 240
           A+ASTM KLK+LEIAYLL+NTESVLKILENCPELEYLDVQGCWNVILDE+FKKFSKVKL+
Sbjct: 181 AIASTMRKLKRLEIAYLLVNTESVLKILENCPELEYLDVQGCWNVILDERFKKFSKVKLI 240

Query: 241 GPLEEFSETIRWDGCSNSSGYLTWDFVADELDDQFEMLEFLGEDYRSVDDEGHAFEEHIY 300
           GPLEEFSE IRWDGCS+SS YL WDFVADELDDQF+MLEFLGEDY SVDDE +AFEEH+Y
Sbjct: 241 GPLEEFSEMIRWDGCSDSSSYLIWDFVADELDDQFDMLEFLGEDYTSVDDEEYAFEEHVY 300

Query: 301 TDWLEGSP 309
            DW E SP
Sbjct: 301 PDWPEESP 308

[Close]
BLAST of Cla004839 vs. NCBI nr
Match: gi|449438827|ref|XP_004137189.1| (PREDICTED: F-box protein FBW2-like [Cucumis sativus])

HSP 1 Score: 546.2 bits (1406), Expect = 3.7e-152
Identity = 267/307 (86.97%), Postives = 286/307 (93.16%), Query Frame = 1 

Query: 1   MEDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSV 60
           MEDC SRRWDELFPDALGLIF+NLSLQE+LVVIPRVCKSWR+TVLGPYCWQEIDIMDWS+
Sbjct: 1   MEDCGSRRWDELFPDALGLIFKNLSLQELLVVIPRVCKSWRETVLGPYCWQEIDIMDWSL 60

Query: 61  LRDPDSVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRSEITNSI 120
           LRDP SV  MLQLL+SRSSGYL KLCIS LPNDSSLSLIA+HGKALHTLRVPRSEITNS 
Sbjct: 61  LRDPVSVITMLQLLISRSSGYLHKLCISSLPNDSSLSLIAKHGKALHTLRVPRSEITNST 120

Query: 121 VEQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDEAL 180
           VEQVA++LSAVTFLDLSFCKNIGAPALEAIGKHC NL GLRRVMCPFEAI RSSQDDEA+
Sbjct: 121 VEQVADKLSAVTFLDLSFCKNIGAPALEAIGKHCVNLIGLRRVMCPFEAIDRSSQDDEAI 180

Query: 181 AVASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVILDEKFKKFSKVKLV 240
           A+ASTMHK+KQLEIAYLLINTESVLKILENCP+LEYLDVQGCW+VILDE+FKKFSKVKL+
Sbjct: 181 AIASTMHKVKQLEIAYLLINTESVLKILENCPQLEYLDVQGCWHVILDERFKKFSKVKLI 240

Query: 241 GPLEEFSETIRWDGCSNSSGYLTWDFVADELDDQFEMLEFLGEDYRSVDDEGHAFEEHIY 300
           GPLEEFSETIRWDG S+SS YL W+FVADELDDQF+MLEFLGEDY SVDD     EEH+Y
Sbjct: 241 GPLEEFSETIRWDGYSDSSSYLVWEFVADELDDQFDMLEFLGEDYTSVDD-----EEHVY 300

Query: 301 TDWLEGS 308
            DWLE S
Sbjct: 301 PDWLEES 302

[Close]
BLAST of Cla004839 vs. NCBI nr
Match: gi|590707063|ref|XP_007047899.1| (F-box with wd-40 2 isoform 1 [Theobroma cacao])

HSP 1 Score: 374.0 bits (959), Expect = 2.5e-100
Identity = 189/295 (64.07%), Postives = 238/295 (80.68%), Query Frame = 1 

Query: 2   EDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSVL 61
           ED + R WDEL PDALGLIF+NLSLQEIL VIPRVCKSWR+ V GPYCWQ+IDI  WS  
Sbjct: 3   EDGEIRHWDELIPDALGLIFKNLSLQEILTVIPRVCKSWRRAVTGPYCWQDIDIEQWSQH 62

Query: 62  RDPDSVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRSEITNSIV 121
             P+++++MLQ+L++RSSG LRKLC++ LPND S S IA++ K+L TLR+PRSEI++++V
Sbjct: 63  CLPETLDRMLQMLINRSSGSLRKLCVTGLPNDRSFSFIADNAKSLQTLRLPRSEISDAVV 122

Query: 122 EQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDEALA 181
           EQVA +LS+VTFLD+S+C+NIGAPALEAIGKHC +L GLRR M P E I + SQDDEALA
Sbjct: 123 EQVAGKLSSVTFLDVSYCRNIGAPALEAIGKHCKSLMGLRRTMHPLEVIDKQSQDDEALA 182

Query: 182 VASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVILDEKF-KKFSKVKLV 241
           +A+TM KLKQLE+AYLLI+TE VLKILENCP+LE LDV+GCWNV LD+ F KKFS++K+V
Sbjct: 183 IATTMPKLKQLEMAYLLISTEGVLKILENCPKLELLDVRGCWNVKLDDNFVKKFSRLKVV 242

Query: 242 GPL-EEFSETIRWDGCSN---SSGYLTWDFVADELD-DQFEMLEFLGEDYRSVDD 291
           GPL  ++     WD CSN   SSGYL WDF+A ++  D  E+ +   ED +S++D
Sbjct: 243 GPLVVDYFGMKGWDDCSNYSGSSGYLAWDFIAGDVGVDYDEISDGDWEDDQSMED 297

[Close]
BLAST of Cla004839 vs. NCBI nr
Match: gi|728811706|gb|KHG00392.1| (F-box FBW2 -like protein [Gossypium arboreum])

HSP 1 Score: 372.5 bits (955), Expect = 7.3e-100
Identity = 190/298 (63.76%), Postives = 237/298 (79.53%), Query Frame = 1 

Query: 2   EDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSVL 61
           ED + R WDEL PDALGLIF+NLSLQEIL VIPRVCKSW++ V GPYCWQ+IDI  WS  
Sbjct: 3   EDGEFRCWDELIPDALGLIFKNLSLQEILTVIPRVCKSWQRAVSGPYCWQDIDIEQWSQQ 62

Query: 62  RDPDSVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRSEITNSIV 121
             P+++++MLQ+L++RSSG LRKLC++ LPN  S S IA++ K+L TLR+PRSEI++S+V
Sbjct: 63  CRPETLDRMLQMLITRSSGSLRKLCVTGLPNSQSFSFIADNAKSLRTLRLPRSEISDSVV 122

Query: 122 EQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDEALA 181
           EQVA RLS+VTFLD+S+C+NIGAPALEAIGKHC  L GLRR M P E +G+ SQDDEALA
Sbjct: 123 EQVAGRLSSVTFLDVSYCRNIGAPALEAIGKHCKLLMGLRRTMHPLEVVGKLSQDDEALA 182

Query: 182 VASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVILDEKF-KKFSKVKLV 241
           +A+TM KLKQLE+AYLLI+TE V+KILENCPELE LDV+GCWNV LDE   KKFS++K+V
Sbjct: 183 IATTMPKLKQLEVAYLLISTEGVVKILENCPELELLDVRGCWNVKLDENLVKKFSRLKVV 242

Query: 242 GPL-EEFSETIRWDGCSN---SSGYLTWDFVADEL----DDQFEMLEFLGEDYRSVDD 291
           GPL  ++     WD CSN   SSGYL WDFVA ++    DD    +++  ED +S++D
Sbjct: 243 GPLVVDYFGMKGWDDCSNYSGSSGYLAWDFVAGDVGIGYDDVISDVDW--EDDQSIED 298

[Close]
BLAST of Cla004839 vs. NCBI nr
Match: gi|823139890|ref|XP_012469807.1| (PREDICTED: F-box protein FBW2-like [Gossypium raimondii])

HSP 1 Score: 370.9 bits (951), Expect = 2.1e-99
Identity = 190/298 (63.76%), Postives = 235/298 (78.86%), Query Frame = 1 

Query: 2   EDCDSRRWDELFPDALGLIFRNLSLQEILVVIPRVCKSWRKTVLGPYCWQEIDIMDWSVL 61
           ED + R WDEL PDALGLIF NLSLQEIL VIPRVCKSW++ V GPYCWQ+IDI  WS  
Sbjct: 3   EDGEFRCWDELIPDALGLIFNNLSLQEILTVIPRVCKSWQRAVSGPYCWQDIDIEQWSQQ 62

Query: 62  RDPDSVNKMLQLLMSRSSGYLRKLCISCLPNDSSLSLIAEHGKALHTLRVPRSEITNSIV 121
             P+++++MLQ+L++RSSG LRKLC++ LPN  S S IA++ K+L TLR+PRSEI +S+V
Sbjct: 63  CRPETLDRMLQMLITRSSGSLRKLCVTGLPNGQSFSFIADNAKSLRTLRLPRSEINDSVV 122

Query: 122 EQVAERLSAVTFLDLSFCKNIGAPALEAIGKHCANLTGLRRVMCPFEAIGRSSQDDEALA 181
           EQVA RLS+VTFLD+S+C+NIGAPALEAIGKHC  L GLRR M P E +G+ SQDDEALA
Sbjct: 123 EQVAGRLSSVTFLDVSYCRNIGAPALEAIGKHCKLLMGLRRTMHPLEVVGKLSQDDEALA 182

Query: 182 VASTMHKLKQLEIAYLLINTESVLKILENCPELEYLDVQGCWNVILDEKF-KKFSKVKLV 241
           +A+TM KLKQLE+AYLLI+TE V+KILENCPELE LDV+GCWNV LDE   KKFS++K+V
Sbjct: 183 IATTMPKLKQLEVAYLLISTEGVVKILENCPELELLDVRGCWNVKLDENLVKKFSRLKVV 242

Query: 242 GPL-EEFSETIRWDGCSN---SSGYLTWDFVADEL----DDQFEMLEFLGEDYRSVDD 291
           GPL  ++     WD CSN   SSGYL WDFVA ++    DD    +++  ED +S++D
Sbjct: 243 GPLVVDYFGMKGWDDCSNYSGSSGYLAWDFVAGDVGIDYDDVISDVDW--EDDQSIED 298

The following BLAST results are available for this feature:
BLAST of Cla004839 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FBW2_ARATH1.2e-7549.52F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1[more]
SKI19_ARATH3.6e-2230.71F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1[more]
FBL23_ARATH2.4e-1829.10Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=3 SV=1[more]
SKIP1_ARATH2.4e-1829.18F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1[more]
FBL22_ARATH1.3e-1630.77Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=3 SV=1[more]
BLAST of Cla004839 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0J6_CUCSA2.6e-15286.97Uncharacterized protein OS=Cucumis sativus GN=Csa_4G096100 PE=4 SV=1[more]
A0A061DJC8_THECC1.7e-10064.07F-box with wd-40 2 isoform 1 OS=Theobroma cacao GN=TCM_001074 PE=4 SV=1[more]
A0A0B0MJ50_GOSAR5.1e-10063.76F-box FBW2-like protein OS=Gossypium arboreum GN=F383_19029 PE=4 SV=1[more]
A0A0D2MJ12_GOSRA1.5e-9963.76Uncharacterized protein OS=Gossypium raimondii GN=B456_003G040600 PE=4 SV=1[more]
D7TG22_VITVI5.6e-9963.95Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0391g00040 PE=4 SV=... [more]
BLAST of Cla004839 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111194|ref|XP_008455627.1|8.4e-15788.64PREDICTED: F-box protein FBW2-like [Cucumis melo][more]
gi|449438827|ref|XP_004137189.1|3.7e-15286.97PREDICTED: F-box protein FBW2-like [Cucumis sativus][more]
gi|590707063|ref|XP_007047899.1|2.5e-10064.07F-box with wd-40 2 isoform 1 [Theobroma cacao][more]
gi|728811706|gb|KHG00392.1|7.3e-10063.76F-box FBW2 -like protein [Gossypium arboreum][more]
gi|823139890|ref|XP_012469807.1|2.1e-9963.76PREDICTED: F-box protein FBW2-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0019005 SCF ubiquitin ligase complex
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0061630 ubiquitin protein ligase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU05517watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU31858watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004839Cla004839.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU05517WMU05517transcribed_cluster
WMU31858WMU31858transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 9..53
score: 3.
NoneNo IPR availablePANTHERPTHR24006FAMILY NOT NAMEDcoord: 5..225
score: 5.9
NoneNo IPR availableunknownSSF52047RNI-likecoord: 34..224
score: 1.12