Cla004830 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004830
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 11225032 .. 11226306 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGATGGGAAGTCCTACAACCTAGCCATTCCAGTCCTAGCCAATCTATATCATGGTCTAGGGTTGATTACCAAAGCTTCTAACCTAATTGGACGCATGGACTTTCACTTTCCTATTCATTATGTCCATGGTTGGCTGACCCATTACTTTAACACACATTATCCCATTCCTGTGGATGTTCGGGGTCCAAAGATGGCCAATTTTTCTGGTGAAGGTGGCTCGATTTATTTCAAGGAATACGAAGCGAAGGAGTTGATCTATAGAGGTGCAAATATTCAATGACATGTAAATATTCAAAACTGAAATAGGCATGAGCACCTGATTGATGATAACGACCTAACGTTTCAACAGTCTTGCCAATTTTCCAGCATGTGATCCGGTTATATATCGTCCCAGTGTGAAGATGTTCTGATACTAGAATCATATAATCCTTATCGGTTTGGATGGTAGTTTGGATTTTATCAAGACACCCTAATGATATAGGGGGATGCCCCCTGCCGTTACTCTCAATAATATATTATATCACTTTAGGGTATGCACCAGACGTAACACATCATCTTAAGTGTTCTTGCCAGCTCGTACATTGGAGCCACGTAACCATGTTACACCGCAATACAGAAACTGGTAGTTGTCAAAACATGGGAGTTATTTTGAGGATAATATACACCGGTTAGTAAGTAGCGCTATTCCTCCCCCATAGCAACCCCGATTGCCTAAGAACAAAGGGGCCAACCAAGGCGGCAAACAACTTCGTTTTATCGAAGAAGCGATTCGTACCCCTCAGGAAGATGATGTGACTCATGAGGAAGAGAGTCATAGTAGCACCAGTGAACATCATTGGAAGAGACCCCTAAAGAAGGTGAAAGCGTCTTGCGATAATTTTTTTGAAGGGGTTCCAAGTGCTTCAGGACTCCCTAGTGCTACTATACCACTGGTATATATGCTATTTTCTTAAGTTCTCTTTGTTCCTTTCTTTACCAGATAATTTATGTTTTCCTTTTCTTTTCTTGTTGGCAGTCTCCATTAAGCTCTCACCTTCAAGAGCTTGCGGGGCAAAATAGTGAAGAATCTTTAATGAGACCTTATAATTTGGATTCATCCATGGAGAAGGTCGATACTTCTAAATTGCCCGCAGCTAAAACAACTAGACAACCCCCATGGCCTCGTGTTATTTCTGAAGACATTCGACGTGGCAAGGAGAAAGTGGGTATTGAGAGCATTGAAGTTTTAGCCCCTCCGCCTGAAGAAGTCGGCTGTTCTATGCCCCTTTAA

mRNA sequence

ATGGTTGATGGGAAGTCCTACAACCTAGCCATTCCAGTCCTAGCCAATCTATATCATGGTCTAGGGTTGATTACCAAAGCTTCTAACCTAATTGGACGCATGGACTTTCACTTTCCTATTCATTATGTCCATGGTTGGCTGACCCATTACTTTAACACACATTATCCCATTCCTGTGGATGTTCGGGGTCCAAAGATGGCCAATTTTTCTGGTGAAGGTGGCTCGATTTATTTCAAGGAATACGAAGCGAAGGAGTTGATCTATAGAGGGGCCAACCAAGGCGGCAAACAACTTCGTTTTATCGAAGAAGCGATTCGTACCCCTCAGGAAGATGATGTGACTCATGAGGAAGAGAGTCATAGTAGCACCAGTGAACATCATTGGAAGAGACCCCTAAAGAAGGTGAAAGCGTCTTGCGATAATTTTTTTGAAGGGGTTCCAAGTGCTTCAGGACTCCCTAGTGCTACTATACCACTGTCTCCATTAAGCTCTCACCTTCAAGAGCTTGCGGGGCAAAATAGTGAAGAATCTTTAATGAGACCTTATAATTTGGATTCATCCATGGAGAAGGTCGATACTTCTAAATTGCCCGCAGCTAAAACAACTAGACAACCCCCATGGCCTCGTGTTATTTCTGAAGACATTCGACGTGGCAAGGAGAAAGTGGGTATTGAGAGCATTGAAGTTTTAGCCCCTCCGCCTGAAGAAGTCGGCTGTTCTATGCCCCTTTAA

Coding sequence (CDS)

ATGGTTGATGGGAAGTCCTACAACCTAGCCATTCCAGTCCTAGCCAATCTATATCATGGTCTAGGGTTGATTACCAAAGCTTCTAACCTAATTGGACGCATGGACTTTCACTTTCCTATTCATTATGTCCATGGTTGGCTGACCCATTACTTTAACACACATTATCCCATTCCTGTGGATGTTCGGGGTCCAAAGATGGCCAATTTTTCTGGTGAAGGTGGCTCGATTTATTTCAAGGAATACGAAGCGAAGGAGTTGATCTATAGAGGGGCCAACCAAGGCGGCAAACAACTTCGTTTTATCGAAGAAGCGATTCGTACCCCTCAGGAAGATGATGTGACTCATGAGGAAGAGAGTCATAGTAGCACCAGTGAACATCATTGGAAGAGACCCCTAAAGAAGGTGAAAGCGTCTTGCGATAATTTTTTTGAAGGGGTTCCAAGTGCTTCAGGACTCCCTAGTGCTACTATACCACTGTCTCCATTAAGCTCTCACCTTCAAGAGCTTGCGGGGCAAAATAGTGAAGAATCTTTAATGAGACCTTATAATTTGGATTCATCCATGGAGAAGGTCGATACTTCTAAATTGCCCGCAGCTAAAACAACTAGACAACCCCCATGGCCTCGTGTTATTTCTGAAGACATTCGACGTGGCAAGGAGAAAGTGGGTATTGAGAGCATTGAAGTTTTAGCCCCTCCGCCTGAAGAAGTCGGCTGTTCTATGCCCCTTTAA

Protein sequence

MVDGKSYNLAIPVLANLYHGLGLITKASNLIGRMDFHFPIHYVHGWLTHYFNTHYPIPVDVRGPKMANFSGEGGSIYFKEYEAKELIYRGANQGGKQLRFIEEAIRTPQEDDVTHEEESHSSTSEHHWKRPLKKVKASCDNFFEGVPSASGLPSATIPLSPLSSHLQELAGQNSEESLMRPYNLDSSMEKVDTSKLPAAKTTRQPPWPRVISEDIRRGKEKVGIESIEVLAPPPEEVGCSMPL

Homology

[Close]

BLAST of Cla004830 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.0e-34
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 1


Query: 1   MVDGKSYNLAIPVLANLYHGLGLITKASNLIGRMDFHFPIHYVHGWLTHYFNTHYPIPVD 60
           M  G  Y+LA+ VLAN+YHGLGLITKASN I  MDFHFP+HYVHGWL HYF THYP+P +
Sbjct: 87  MAAGTIYSLAVLVLANIYHGLGLITKASNPIRCMDFHFPMHYVHGWLAHYFGTHYPLPTE 146

Query: 61  VRGPKMANFSGEGGSIYFKEYEAKELIYRGA 92
           VRGPKM NFSGEGGSIYF EYEA+ELI+ GA
Sbjct: 147 VRGPKMTNFSGEGGSIYFGEYEARELIHNGA 177

[Close]

BLAST of Cla004830 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.5e-14
Identity = 51/140 (36.43%), Postives = 71/140 (50.71%), Query Frame = 1


Query: 89  RGANQGGKQLRFIEEAIRTPQEDDVTHEEESHSSTSEHHWKRPLKKVKASCDNFFEGVPS 148
           RG+N GGK++  +E      +E+   H++ES SS S+ HWKRPLKK K S D+       
Sbjct: 329 RGSNLGGKEIGLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDH------- 388

Query: 149 ASGLPSATIPLSPLSSHLQELAGQNSEESLMRPYNLDSSMEKVDTSKLPAAKTTRQPPWP 208
                               L   +S+ESL  P+ +DS+ E+V TSK P  K   Q   P
Sbjct: 389 --------------PDWFARLIEPDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCP 447

Query: 209 RVISEDIRRGKEKVGIESIE 229
             + E+IRRGK  VG + +E
Sbjct: 449 SALFEEIRRGKMTVGGKDLE 447

HSP 2 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 43/90 (47.78%), Postives = 62/90 (68.89%), Query Frame = 1


Query: 1   MVDGKSYNLAIPVLANLYHGLGLITKASNLIGRMDFHFPIHYVHGWLTHYFNTHYPIPVD 60
           MV+GK  +LA+PVLA++YHGL  I+ +S L   +   FPIHYV+GWL +Y  THYP+   
Sbjct: 341 MVNGKRVSLAVPVLASIYHGLNKISNSSQL-DHIRVCFPIHYVYGWLAYYLKTHYPLTSG 400

Query: 61  VRGPKMANFSGEGGSIYFKEYEAKELIYRG 91
              P+M  +SGEG + YF + EA++ ++RG
Sbjct: 401 PYLPRMVVYSGEGAAKYFDKDEARKRLHRG 429

[Close]

BLAST of Cla004830 vs. TrEMBL
Match: M1BMX6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018974 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 1


Query: 1   MVDGKSYNLAIPVLANLYHGLGLITKASNLIGRMDFHFPIHYVHGWLTHYFNTHYPIPVD 60
           M  GK  +LA+PVLA++YHGL  I+ +S L   +   FPIHYV+GWL +Y  THYP+   
Sbjct: 222 MASGKRVSLAVPVLASIYHGLNKISNSSQL-DHIRVCFPIHYVYGWLAYYLKTHYPLTSG 281

Query: 61  VRGPKMANFSGEGGSIYFKEYEAKELIYRG 91
              P+M  +SGEG + YF + EA++ ++ G
Sbjct: 282 PSLPRMVVYSGEGAAKYFDKDEARKRVHWG 310

[Close]

BLAST of Cla004830 vs. TrEMBL
Match: M1BMX6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018974 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 1


Query: 11  IPVLANLYHGLGLITKASNLIGRMDFHFPIHYVHGWLTHYFNTHYPIPVDVRGPKMANFS 70
           +PVLA++YHGL  I+ +S L   +   FPIHYV+GWL +Y  THYP+      P+M  +S
Sbjct: 472 VPVLASIYHGLNKISNSSQL-DHIRVCFPIHYVYGWLAYYLKTHYPLTSGPSLPRMVVYS 531

Query: 71  GEGGSIYFKEYEAKELIYRG 91
           GEG + YF + EA++ ++RG
Sbjct: 532 GEGAAKYFDKDEARKRVHRG 550

HSP 2 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1


Query: 1  MVDGKSYNLAIPVLANLYHGLGLITKASNLIGRMDFHFPIHYVHGWLTHYFNTHYPIPVD 60
          M  G +Y+L +PVLA++YHGL +I+++S         FP HYV+GWL HYF+TH+ +   
Sbjct: 1  MARGDTYSLGVPVLASIYHGLNVISRSSRP-SYSGSCFPTHYVYGWLGHYFSTHHAVEPP 60

Query: 61 VRGPKMANFSGEGGSIYFKEYEAKELIYRG 91
            GP M  FSG   S  F + +A++LI+ G
Sbjct: 61 PPGPLMVLFSGAKSSKCFTDVQARDLIHGG 89

[Close]

BLAST of Cla004830 vs. TrEMBL
Match: A0A0K9RVZ5_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_027810 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1


Query: 1   MVDGKSYNLAIPVLANLYHGLGLITKASNLIGRMDFHFPIHYVHGWLTHYFNTHY---PI 60
           M  G++++LA+PVL ++Y GL  I++ S       F FP HY++ WL +YFNTH+   P+
Sbjct: 216 MARGETFSLAVPVLTSIYRGLNSISRNSKPSYSKTF-FPAHYLYAWLAYYFNTHHDADPV 275

Query: 61  PVDVRGPKMANFSGEGGSIYFKEYEAKELIYRGA 92
           P    GP M  +SGE GS YF + +A+ LI  GA
Sbjct: 276 PF---GPLMVIYSGEQGSKYFNDGDARTLIRGGA 305

[Close]

BLAST of Cla004830 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 152.9 bits (385), Expect = 7.1e-34
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 1


Query: 1   MVDGKSYNLAIPVLANLYHGLGLITKASNLIGRMDFHFPIHYVHGWLTHYFNTHYPIPVD 60
           M  G  Y+LA+ VLAN+YHGLGLITKASN I  MDFHFP+HYVHGWL HYF THYP+P +
Sbjct: 87  MAAGTIYSLAVLVLANIYHGLGLITKASNPIRCMDFHFPMHYVHGWLAHYFGTHYPLPTE 146

Query: 61  VRGPKMANFSGEGGSIYFKEYEAKELIYRGA 92
           VRGPKM NFSGEGGSIYF EYEA+ELI+ GA
Sbjct: 147 VRGPKMTNFSGEGGSIYFGEYEARELIHNGA 177

[Close]

BLAST of Cla004830 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 51/140 (36.43%), Postives = 71/140 (50.71%), Query Frame = 1


Query: 89  RGANQGGKQLRFIEEAIRTPQEDDVTHEEESHSSTSEHHWKRPLKKVKASCDNFFEGVPS 148
           RG+N GGK++  +E      +E+   H++ES SS S+ HWKRPLKK K S D+       
Sbjct: 329 RGSNLGGKEIGLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDH------- 388

Query: 149 ASGLPSATIPLSPLSSHLQELAGQNSEESLMRPYNLDSSMEKVDTSKLPAAKTTRQPPWP 208
                               L   +S+ESL  P+ +DS+ E+V TSK P  K   Q   P
Sbjct: 389 --------------PDWFARLIEPDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCP 447

Query: 209 RVISEDIRRGKEKVGIESIE 229
             + E+IRRGK  VG + +E
Sbjct: 449 SALFEEIRRGKMTVGGKDLE 447

HSP 2 Score: 102.8 bits (255), Expect = 8.5e-19
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = 1


Query: 1   MVDGKSYNLAIPVLANLYHGLGLITKASNLIGRMDFHFPIHYVHGWLTHYFNTHYPIPVD 60
           M +G +++LA+PVLAN+Y GL  +  +++ +G  +  FP+HYVHGWL  YFNTHY  P  
Sbjct: 197 MAEGYTFSLAVPVLANIYSGLRQVHDSTSSLGYSNACFPLHYVHGWLALYFNTHYKAPRS 256

Query: 61  VRGPKMANFSGEGGSIYFKEYEAKELIYRG 91
           +RGP+M  FSGEGG+ Y+   EA+  I++G
Sbjct: 257 LRGPRMVEFSGEGGAKYYTNLEARTHIHKG 286

[Close]

BLAST of Cla004830 vs. NCBI nr
Match: gi|848853669|ref|XP_012844633.1| (PREDICTED: uncharacterized protein LOC105964676 [Erythranthe guttata])

HSP 1 Score: 97.1 bits (240), Expect = 4.6e-17
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = 1


Query: 1   MVDGKSYNLAIPVLANLYHGLGLITKASNLIGRMDFHFPIHYVHGWLTHYFNTHYPIPVD 60
           M  G+   LA+PVLA++Y GL  I+ +     R+   FPIH+V+GWL HYF THYP+   
Sbjct: 345 MASGRKVGLAVPVLASIYKGLNKISNSPRPT-RVSSPFPIHFVYGWLAHYFKTHYPVWQG 404

Query: 61  VRGPKMANFSGEGGSIYFKEYEAKELIYRG 91
           VRGPKM  +SGEGG+ Y+   EA++ I++G
Sbjct: 405 VRGPKMTTYSGEGGAKYYDSKEARKRIHKG 433

[Close]

BLAST of Cla004830 vs. NCBI nr
Match: gi|698477662|ref|XP_009786038.1| (PREDICTED: uncharacterized protein LOC104234204 [Nicotiana sylvestris])

HSP 1 Score: 89.7 bits (221), Expect = 7.4e-15
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 1


Query: 1   MVDGKSYNLAIPVLANLYHGLGLITKASNLIGRMDFHFPIHYVHGWLTHYFNTHYPIPVD 60
           M  G+  +L +PVLA++YHGL  I+++S L  ++   FPIHYV+GWL HYF THYP+   
Sbjct: 335 MAGGRQISLIVPVLASIYHGLNKISRSSQL-DQVKVSFPIHYVYGWLAHYFKTHYPLTNV 394

Query: 61  VRGPKMANFSGEGGSIYFKEYEAKELIYRG 91
           +  P M  +SGEG + YF E + ++ I+ G
Sbjct: 395 LSVPLMVAYSGEGVARYFDEKDGRKRIHNG 423

[Close]

BLAST of Cla004830 vs. NCBI nr
Match: gi|697145785|ref|XP_009627032.1| (PREDICTED: uncharacterized protein LOC104117664 [Nicotiana tomentosiformis])

HSP 1 Score: 87.8 bits (216), Expect = 2.8e-14
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 1


Query: 1   MVDGKSYNLAIPVLANLYHGLGLITKASNLIGRMDFHFPIHYVHGWLTHYFNTHYPIPVD 60
           M  G+  +LA+PVLA++YHGL  I+ +S L  ++  +F IHYV+GWL HYF THYP+   
Sbjct: 190 MASGRKISLAVPVLASIYHGLNKISCSSQL-DQVKVYFHIHYVYGWLAHYFKTHYPLAKG 249

Query: 61  VRGPKMANFSGEGGSIYFKEYEAKELIYRG 91
              P M  +S EG + YF E +A++ I+ G
Sbjct: 250 SSVPLMVAYSREGAARYFDEKDARKCIHNG 278

The following BLAST results are available for this feature:

BLAST of Cla004830 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB9_CUCME	5.0e-34	75.82	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB9_CUCME	7.5e-14	36.43	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
M1BMX6_SOLTU	3.3e-14	45.56	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018974 PE=4 SV=1	[more]
M1BMX6_SOLTU	1.8e-12	46.25	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018974 PE=4 SV=1	[more]
A0A0K9RVZ5_SPIOL	2.7e-11	43.62	Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_027810 PE=4 SV=1	[more]

BLAST of Cla004830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136292\|gb\|ADN34118.1\|	7.1e-34	75.82	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|307136292\|gb\|ADN34118.1\|	1.1e-13	36.43	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|848853669\|ref\|XP_012844633.1\|	4.6e-17	48.89	PREDICTED: uncharacterized protein LOC105964676 [Erythranthe guttata]	[more]
gi\|698477662\|ref\|XP_009786038.1\|	7.4e-15	45.56	PREDICTED: uncharacterized protein LOC104234204 [Nicotiana sylvestris]	[more]
gi\|697145785\|ref\|XP_009627032.1\|	2.8e-14	45.56	PREDICTED: uncharacterized protein LOC104117664 [Nicotiana tomentosiformis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004830	Cla004830.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004830	Cucumber (Gy14) v1	cgywmB502
Cla004830	Cucurbita maxima (Rimu)	cmawmB296
Cla004830	Cucurbita maxima (Rimu)	cmawmB654
Cla004830	Cucurbita moschata (Rifu)	cmowmB290
Cla004830	Cucurbita moschata (Rifu)	cmowmB649
Cla004830	Wild cucumber (PI 183967)	cpiwmB295
Cla004830	Melon (DHL92) v3.5.1	mewmB494
Cla004830	Watermelon (Charleston Gray)	wcgwmB059
Cla004830	Cucumber (Chinese Long) v2	cuwmB294
Cla004830	Cucurbita pepo (Zucchini)	cpewmB206
Cla004830	Cucurbita pepo (Zucchini)	cpewmB383
Cla004830	Bottle gourd (USVL1VR-Ls)	lsiwmB241
Cla004830	Cucumber (Gy14) v2	cgybwmB271
Cla004830	Melon (DHL92) v3.6.1	medwmB481
Cla004830	Silver-seed gourd	carwmB0939
Cla004830	Silver-seed gourd	carwmB1015
Cla004830	Silver-seed gourd	carwmB1017
Cla004830	Cucumber (Chinese Long) v3	cucwmB303
Cla004830	Watermelon (97103) v2	wmwmbB059
Cla004830	Wax gourd	wgowmB029