Cla004822 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004822
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 11076098 .. 11076430 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTTTTTCACTCTCTCATCTTTACCTTCCACATTCTCGCCTCCACTTCTATCTCCGCCCAGCGCACCGCCGCCGCCGCCCCTCCCTGCCGATTATATGCGGCGCGCTCACCGTCAAGTATCCGTTTGGCACAGGCTACGGCTGCGGTTCTCCGCGGTTTTCCTCTCACGTGACTTGCTCCTCAGACGACCGACTCCTCCTCAACACACACACCGGCGATTATCCAATCACATCGATTTCATACTCCGATTCAACCGTCGTAATCTCGCCGCCGTCCATGTCGACTTGCTCTAAAATGCACGAATTTAGAACCCTAGGCATCGACTAG

mRNA sequence

ATGGAGTTTTTTTCACTCTCTCATCTTTACCTTCCACATTCTCGCCTCCACTTCTATCTCCGCCCAGCGCACCGCCGCCGCCGCCCCTCCCTGCCGATTATATGCGGCGCGCTCACCGTCAAGTATCCGTTTGGCACAGGCTACGGCTGCGGTTCTCCGCGGTTTTCCTCTCACGTGACTTGCTCCTCAGACGACCGACTCCTCCTCAACACACACACCGGCGATTATCCAATCACATCGATTTCATACTCCGATTCAACCGTCGTAATCTCGCCGCCGTCCATGTCGACTTGCTCTAAAATGCACGAATTTAGAACCCTAGGCATCGACTAG

Coding sequence (CDS)

ATGGAGTTTTTTTCACTCTCTCATCTTTACCTTCCACATTCTCGCCTCCACTTCTATCTCCGCCCAGCGCACCGCCGCCGCCGCCCCTCCCTGCCGATTATATGCGGCGCGCTCACCGTCAAGTATCCGTTTGGCACAGGCTACGGCTGCGGTTCTCCGCGGTTTTCCTCTCACGTGACTTGCTCCTCAGACGACCGACTCCTCCTCAACACACACACCGGCGATTATCCAATCACATCGATTTCATACTCCGATTCAACCGTCGTAATCTCGCCGCCGTCCATGTCGACTTGCTCTAAAATGCACGAATTTAGAACCCTAGGCATCGACTAG

Protein sequence

MEFFSLSHLYLPHSRLHFYLRPAHRRRRPSLPIICGALTVKYPFGTGYGCGSPRFSSHVTCSSDDRLLLNTHTGDYPITSISYSDSTVVISPPSMSTCSKMHEFRTLGID

Homology

[Close]

BLAST of Cla004822 vs. TrEMBL
Match: A0A061DHT7_THECC (Membrane lipoprotein OS=Theobroma cacao GN=TCM_001086 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.5e-25
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 1


Query: 35  CGALTVKYPFGTGYGCGSPRFSSHVTCSSDDRLLLNTHTGDYPITSISYSDSTVVISPPS 94
           CG+L VKYPFGTGYGCGSPRF  +VTCSSD RLLL THTG YPITS+SY DST++I+PP 
Sbjct: 33  CGSLQVKYPFGTGYGCGSPRFQPYVTCSSD-RLLLTTHTGSYPITSVSYKDSTLIITPPY 92

Query: 95  MSTCSKMHEFRTLGID 111
           MSTCS M +   LG+D
Sbjct: 93  MSTCSSMQQSPNLGLD 107

[Close]

BLAST of Cla004822 vs. TrEMBL
Match: B9T3R3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0038740 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-23
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 35  CGALTVKYPFGTGYGCGSPRFSSHVTCSSD-DRLLLNTHTGDYPITSISYSDSTVVISPP 94
           CG+L VKYPFGT YGCGSPRF  ++TC+S  D+LLL THTG YPITSISY+ +T+ ISPP
Sbjct: 33  CGSLQVKYPFGTAYGCGSPRFYPYITCASGGDQLLLTTHTGSYPITSISYTATTITISPP 92

Query: 95  SMSTCSKMHEFRTLGID 111
           SMSTC+ MH+   LG+D
Sbjct: 93  SMSTCTSMHQSPNLGLD 109

[Close]

BLAST of Cla004822 vs. TrEMBL
Match: A0A059AMD5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00510 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-22
Identity = 56/98 (57.14%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 16  LHFYLRPAHRRRRPSLPIICGALTVKYPFGTGYGCGSPRFSSHVTC---SSDDRLLLNTH 75
           L  +LRPA     P+    CG+LTVKYPFGTGYGCGSPRF  +VTC     DD L+L TH
Sbjct: 13  LLLHLRPAESPN-PACRNACGSLTVKYPFGTGYGCGSPRFHPYVTCVHGQDDDTLVLTTH 72

Query: 76  TGDYPITSISYSDSTVVISPPSMSTCSKMHEFRTLGID 111
           TG YP+TSISY+ S+++ISP  MSTC+ M     LG+D
Sbjct: 73  TGSYPVTSISYTTSSLIISPSDMSTCTSMKPSPNLGLD 109

[Close]

BLAST of Cla004822 vs. TrEMBL
Match: B9HFF1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s05260g PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.3e-21
Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 35  CGALTVKYPFGTGYGCGSPRFSSHVTCSSD-DRLLLNTHTGDYPITSISYSDSTVVISPP 94
           CG++ VKYPFG+G+GCGSPRF  ++ CS + D+LLL THTG YPITSISY+ ST +I+PP
Sbjct: 37  CGSIQVKYPFGSGHGCGSPRFHPYIACSPEGDQLLLTTHTGSYPITSISYTTSTFIITPP 96

Query: 95  SMSTCSKMHEFRTLGID 111
            MSTC+ M +   LG+D
Sbjct: 97  HMSTCTSMQQSPNLGLD 113

[Close]

BLAST of Cla004822 vs. TrEMBL
Match: A0A0D2PS33_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G096700 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-20
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1


Query: 35  CGALTVKYPFGTGYGCGSPRFSSHVTCSSDDRLLLNTHTGDYPITSISYSDSTVVISPPS 94
           CG+L +KYPFGTGYGCGSPRF  ++TC S ++LLL THTG Y IT+ISY DST+ I+P +
Sbjct: 34  CGSLQIKYPFGTGYGCGSPRFEPYITCKS-NQLLLTTHTGSYLITAISYKDSTLTITPSA 93

Query: 95  MSTCSKMHEFRTLGID 111
           MSTC+ M +   LG+D
Sbjct: 94  MSTCNSMQQSPNLGLD 108

[Close]

BLAST of Cla004822 vs. NCBI nr
Match: gi|590707106|ref|XP_007047912.1| (Membrane lipoprotein [Theobroma cacao])

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-24
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 1


Query: 35  CGALTVKYPFGTGYGCGSPRFSSHVTCSSDDRLLLNTHTGDYPITSISYSDSTVVISPPS 94
           CG+L VKYPFGTGYGCGSPRF  +VTCSSD RLLL THTG YPITS+SY DST++I+PP 
Sbjct: 33  CGSLQVKYPFGTGYGCGSPRFQPYVTCSSD-RLLLTTHTGSYPITSVSYKDSTLIITPPY 92

Query: 95  MSTCSKMHEFRTLGID 111
           MSTCS M +   LG+D
Sbjct: 93  MSTCSSMQQSPNLGLD 107

[Close]

BLAST of Cla004822 vs. NCBI nr
Match: gi|255584291|ref|XP_002532882.1| (PREDICTED: uncharacterized protein LOC8281252 [Ricinus communis])

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-23
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 35  CGALTVKYPFGTGYGCGSPRFSSHVTCSSD-DRLLLNTHTGDYPITSISYSDSTVVISPP 94
           CG+L VKYPFGT YGCGSPRF  ++TC+S  D+LLL THTG YPITSISY+ +T+ ISPP
Sbjct: 33  CGSLQVKYPFGTAYGCGSPRFYPYITCASGGDQLLLTTHTGSYPITSISYTATTITISPP 92

Query: 95  SMSTCSKMHEFRTLGID 111
           SMSTC+ MH+   LG+D
Sbjct: 93  SMSTCTSMHQSPNLGLD 109

[Close]

BLAST of Cla004822 vs. NCBI nr
Match: gi|629088297|gb|KCW54550.1| (hypothetical protein EUGRSUZ_I00510 [Eucalyptus grandis])

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-22
Identity = 56/98 (57.14%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 16  LHFYLRPAHRRRRPSLPIICGALTVKYPFGTGYGCGSPRFSSHVTC---SSDDRLLLNTH 75
           L  +LRPA     P+    CG+LTVKYPFGTGYGCGSPRF  +VTC     DD L+L TH
Sbjct: 13  LLLHLRPAESPN-PACRNACGSLTVKYPFGTGYGCGSPRFHPYVTCVHGQDDDTLVLTTH 72

Query: 76  TGDYPITSISYSDSTVVISPPSMSTCSKMHEFRTLGID 111
           TG YP+TSISY+ S+++ISP  MSTC+ M     LG+D
Sbjct: 73  TGSYPVTSISYTTSSLIISPSDMSTCTSMKPSPNLGLD 109

[Close]

BLAST of Cla004822 vs. NCBI nr
Match: gi|702460129|ref|XP_010027908.1| (PREDICTED: wall-associated receptor kinase-like 20 [Eucalyptus grandis])

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-22
Identity = 56/98 (57.14%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 16  LHFYLRPAHRRRRPSLPIICGALTVKYPFGTGYGCGSPRFSSHVTC---SSDDRLLLNTH 75
           L  +LRPA     P+    CG+LTVKYPFGTGYGCGSPRF  +VTC     DD L+L TH
Sbjct: 43  LLLHLRPAESPN-PACRNACGSLTVKYPFGTGYGCGSPRFHPYVTCVHGQDDDTLVLTTH 102

Query: 76  TGDYPITSISYSDSTVVISPPSMSTCSKMHEFRTLGID 111
           TG YP+TSISY+ S+++ISP  MSTC+ M     LG+D
Sbjct: 103 TGSYPVTSISYTTSSLIISPSDMSTCTSMKPSPNLGLD 139

[Close]

BLAST of Cla004822 vs. NCBI nr
Match: gi|224093746|ref|XP_002309973.1| (hypothetical protein POPTR_0007s05260g [Populus trichocarpa])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 35  CGALTVKYPFGTGYGCGSPRFSSHVTCSSD-DRLLLNTHTGDYPITSISYSDSTVVISPP 94
           CG++ VKYPFG+G+GCGSPRF  ++ CS + D+LLL THTG YPITSISY+ ST +I+PP
Sbjct: 37  CGSIQVKYPFGSGHGCGSPRFHPYIACSPEGDQLLLTTHTGSYPITSISYTTSTFIITPP 96

Query: 95  SMSTCSKMHEFRTLGID 111
            MSTC+ M +   LG+D
Sbjct: 97  HMSTCTSMQQSPNLGLD 113

The following BLAST results are available for this feature:

BLAST of Cla004822 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061DHT7_THECC	9.5e-25	72.37	Membrane lipoprotein OS=Theobroma cacao GN=TCM_001086 PE=4 SV=1	[more]
B9T3R3_RICCO	3.0e-23	67.53	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0038740 PE=4 SV=1	[more]
A0A059AMD5_EUCGR	1.5e-22	57.14	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00510 PE=4 SV=1	[more]
B9HFF1_POPTR	8.3e-21	61.04	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s05260g PE=4 SV=1	[more]
A0A0D2PS33_GOSRA	2.4e-20	61.84	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G096700 PE=4 SV=1	[more]

BLAST of Cla004822 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590707106\|ref\|XP_007047912.1\|	1.4e-24	72.37	Membrane lipoprotein [Theobroma cacao]	[more]
gi\|255584291\|ref\|XP_002532882.1\|	4.4e-23	67.53	PREDICTED: uncharacterized protein LOC8281252 [Ricinus communis]	[more]
gi\|629088297\|gb\|KCW54550.1\|	2.2e-22	57.14	hypothetical protein EUGRSUZ_I00510 [Eucalyptus grandis]	[more]
gi\|702460129\|ref\|XP_010027908.1\|	2.2e-22	57.14	PREDICTED: wall-associated receptor kinase-like 20 [Eucalyptus grandis]	[more]
gi\|224093746\|ref\|XP_002309973.1\|	1.2e-20	61.04	hypothetical protein POPTR_0007s05260g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025287	WAK_GUB

Vocabulary: **Molecular Function**
Term	Definition
GO:0030247	polysaccharide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0030247	polysaccharide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004822	Cla004822.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025287	Wall-associated receptor kinase, galacturonan-binding domain	PFAM	PF13947	GUB_WAK_bind	coord: 34..102 score: 1.2
None	No IPR available	PANTHER	PTHR33355	FAMILY NOT NAMED	coord: 35..110 score: 5.6
None	No IPR available	PANTHER	PTHR33355:SF4	SUBFAMILY NOT NAMED	coord: 35..110 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004822	Cla97C10G192240	Watermelon (97103) v2	wmwmbB059
Cla004822	Lsi03G009300	Bottle gourd (USVL1VR-Ls)	lsiwmB241
Cla004822	Bhi11G000836	Wax gourd	wgowmB029

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004822	Wild cucumber (PI 183967)	cpiwmB295
Cla004822	Watermelon (Charleston Gray)	wcgwmB059
Cla004822	Cucumber (Chinese Long) v2	cuwmB294
Cla004822	Cucumber (Gy14) v2	cgybwmB271
Cla004822	Silver-seed gourd	carwmB1017
Cla004822	Cucumber (Chinese Long) v3	cucwmB303
Cla004822	Cucumber (Gy14) v1	cgywmB502