Cla004563 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004563
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	PHD finger protein ALFIN-LIKE 7 (AHRD V1 ***- ALFL7_ARATH)
Location	Chr10 : 10042858 .. 10046116 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTCACCACTGGTCTCTTCATCTTTTTTCTTCTTCCTGCTTCCTCCCCCTTTTTTTTTTTCTCTGTAAAGTTGTTTTTACTTTGCTTGTGTTGTTCCTGTTAGATGTAGGTTGACTGTGTAGTTATTTATATACGAATTCCTGCACTTTAATCCTTGTTTTTGTTTTTGAGTTTTTTTTGCAGATGTCGAGAAGTTCTACCAGCAGTGCGATCCTGGTGGGTTTTCTTTTTCTTCTGTTGTTCTCGCGATACCTGTTGATTATCTGAAACATTCGAATTTATTTAGTTTTCGGAAATTTATTGGTCGCTGTTTTTAGTTCTTCCGTATGTTTGTGGTCCTGAATTCTGTTTGTTTCAATGGGTCTGAATTCTCTTCTTCACTTTCATGAATTATGATAGGCTTGTCTTCATGACACAGTTAGTCGTATGTCTCCGGAATGAGATTTCACCTTTGCGTGGGATGTAACCAACGATCTTTTTCTTTCTATTTCAAAGTTTAATTCAGTTTATTGAACAATTTGGGGGCCAGGGGATGTGGTAGAACTGAAGATATATGTTCGTTTTTTGAACCCTAGGGTAGACTGCACATAACAAGATAAATGGTTCGACTCACTGGCTAAATTTTATATTAGTGGATATTCAGTAACAAGCTGATCTGCTAATCGGGTGGTCGGGACAACTCATGGTCACAAATTTTGAAGCTCATAAATAGAAGGGTGAGAGTGAAAACTATTCCATATATGTCTCTCTGTTAGGTTGCTTTAGACTGGCTGTTTTAACTTTTAATGATGTTCACTTGGTCTCTGCACTGTTATAGGTAACATTTTTTATTTTAAAGGTACGATTTCAATTACAGTATTGGGCAAAGTGTGCGTTGGTTATTATTGTATTGGAATCCTCTCTCTCTCTCTCTTCCCGTTTCTTTATTCTCAAGGATTTTTGGATGGAAAACAAGCTAGAGGGAGCTGATTTGAGTTTTTACCGAAAATCATTCCAATGGGTAATCAATGAGGTTAGGCCATAACTACAAAAAGGGTGGTCAATTTACACCATGAGATAGAGAAGTAGTAGAGGTAGAGGAGATGAAAGTCTCAAAAGCTTGCTCTTTGTTGGGGAAATGAGAGTTCCTCTTCGACCAAAGAGTCCATAAGAAAGGCTGAATCAAGTTGAGCCGTGGGCTTTCTCCCTCTTGAAAGGATGGACAATGTGCACAGAAGAGAGGAGGGTCCAAATGTCATAGGGAGAGCCAAAATCCAGTTAAAGGATGAAACACTGAATTCCTAGGAAGATCCTGTCTTGCAGCACATGGTCTGAAAAGTTGGAAAGGAGATTCTGGGGTGCTCTTGCACATAATACAGCAATTTGGAGACTAGTTGATCCATGGAAATCTTCTCTGCAACCAATCGTGGGTGTTTAAGCATGAATGACTCAATTCCTATAAATGGAATTTGACTTTTTTAGGAAACTTTCCATCCCATATGGCTCGATGAAGTTTTTCTTTCCCGATGATTCTAGTTGTTGCAAAAGATCTAGAGAGGGATATGGTTGTGAATAAAACCTTCCTTTTCTAGATTCCATTTGGCCAAGCCCAATAATCTTCATTCTCAGTGGGCCTAAAGTGATTGAAGGTATTGGAGAGCCTTGCCCATTCACCTATTTCAATTTTTGCGAGACTTCTTCTTTGTCAGGGTTCCATGAAGCTAGTTTGATCTTGCACAAGTCAGCAATGGATGCTTCTTTTTAACTGTGATGAAAGTTAAGGAGGGAAAATCATCTTTGAGGGTTGTTTGCCCCAACCAAACGGCAAGCAAAAACCATGTCTTATCCCCCTTTCCAGCTTTATGAGAGATGTGGCTGAAAACAACTTCTTTAAGCTTGTCCACTACTCCATGGGCCCTTAACAAATGATACTATTATATGACCCAGTTTAAAATCAATGGGAGAGAAGCCACACTTTGATGAGATAACTTTCCTCTTTAGTGCTGATTTTTTAGATTGAAAACGCAAATCCACTTGACCAAGAGGGATTTATTCTTGTCTAAGGCCAATAGTCCCTAATCTACCTTCTTGTATTGGAAGCTTCACTTTGTCCCATCCAAGGAGGTAATGACTGGACTTATCCGTTCTGCCCTCCCATTTTCCAAAGAAAATTACAGTACAATTGTTCAATCGAAGCTGTTACCTTGGAGATGCGGAAAAGGGACAAGTAACATATGGTAAGGCAAAGGCTGGACAGTGTAGCATCGAGTGGGAATGACCACAATAAATCAGCATTTTCCAACCTTTTCAACTGTGGAAGCCCCAAAGGCTGTCGTGTTGGGTTTACCATTGAGGTAAAGGCCCACATATGAAGCCTTTGGGGCTTCCAGCAATGACTTCCCTCTATGGTCTTTTTACTCTCTCTTACTTAGGTTACCTTTGTCACTTGTATATATTATCTCTTTAGTGAACGAAATACCAGATTTTGATTCTATCATTTGTAATGCAAAGTTGTTCAATGTTTTAAAATTTTAAATCATGGTATGCACAACTTCCACTTTTTCACCCCAATTCTCATACTAAAGGAATGAGATTATTTCACTCTATATAACTCTGACGGGAAGTTGAAAGTGGTCACTGGTCCTTCAGTATTGATTTTCTGGACACCCTCAGTGATATGGAGGTGAACCTTGACTGGCATCTTGCGGAGGACTGAACTAGGAACCTTGTTGGTTGGCTATGTTGTCCTTGATTACATGTATAGGGACTGAACTGGGAAAGTCTTGTCATATATATCACAATTACCCTTATATATATATATTTATAATTGCTATTGGTGCTTTCTAGCTGATAGTATCTGTTAGAGTAATACAATTTTTCTTGATTTTAATTTGACATATAATGAGGGTTAAAGAAAGTATTTTTTACTATTTTCTGAGACAATTCTTGTCATACTTATAGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCGGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGTATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGACTGAAAGGTAG

mRNA sequence

ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTCACCACTGATGTCGAGAAGTTCTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCGGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGTATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGACTGAAAGGTAG

Coding sequence (CDS)

ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTCACCACTGATGTCGAGAAGTTCTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCGGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGTATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGACTGAAAGGTAG

Protein sequence

MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER

Homology

[Close]

BLAST of Cla004563 vs. Swiss-Prot
Match: ALFL7_ARATH (PHD finger protein ALFIN-LIKE 7 OS=Arabidopsis thaliana GN=AL7 PE=1 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.2e-61
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 1


Query: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60
           MEG+ HPIPRTVEEV+ DF+GRRAGLIKAL+TDV+KFY QCDPEKENLCLYGLPNETWEV
Sbjct: 1   MEGIQHPIPRTVEEVFSDFRGRRAGLIKALSTDVQKFYHQCDPEKENLCLYGLPNETWEV 60

Query: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120
           NLPVEEVPPELPEPALGINFARDGMQEKDW+SLVAVHSDSWL++VAFYFGARFGFGK ER
Sbjct: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNER 120

[Close]

BLAST of Cla004563 vs. Swiss-Prot
Match: ALFL6_ARATH (PHD finger protein ALFIN-LIKE 6 OS=Arabidopsis thaliana GN=AL6 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 9.8e-61
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 1


Query: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60
           MEG+ HPIPRTVEEV+ DF+GRRAGLIKALT D+ KFYQ CDPEKENLCLYGLPNETWEV
Sbjct: 1   MEGITHPIPRTVEEVFSDFRGRRAGLIKALTNDMVKFYQTCDPEKENLCLYGLPNETWEV 60

Query: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120
           NLPVEEVPPELPEPALGINFARDGMQEKDW+SLVAVHSDSWLL+VAFYFGARFGFGK ER
Sbjct: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWVSLVAVHSDSWLLSVAFYFGARFGFGKNER 120

[Close]

BLAST of Cla004563 vs. Swiss-Prot
Match: ALFIN_MEDSA (PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.9e-60
Identity = 110/121 (90.91%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 1   MEGMP-HPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWE 60
           MEGM  HP+PRTVEEV+ D+KGRRAGLIKALTTDVEKFYQ  DPEKENLCLYG PNETWE
Sbjct: 1   MEGMAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLVDPEKENLCLYGFPNETWE 60

Query: 61  VNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTE 120
           VNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGK +
Sbjct: 61  VNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKND 120

[Close]

BLAST of Cla004563 vs. Swiss-Prot
Match: ALFL8_ORYSJ (PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. japonica GN=Os11g0244800 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.8e-54
Identity = 98/111 (88.29%), Postives = 101/111 (90.99%), Query Frame = 1


Query: 10  RTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPP 69
           RT E+V+ DF+ RRAG+IKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLP EEVPP
Sbjct: 8   RTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPAEEVPP 67

Query: 70  ELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 121
           ELPEPALGINFARDGM EKDWLSLVAVHSD+WLLAVAFYFGARFGF K  R
Sbjct: 68  ELPEPALGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESR 118

[Close]

BLAST of Cla004563 vs. Swiss-Prot
Match: ALFL8_ORYSI (PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. indica GN=OsI_35671 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.8e-54
Identity = 98/111 (88.29%), Postives = 101/111 (90.99%), Query Frame = 1


Query: 10  RTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPP 69
           RT E+V+ DF+ RRAG+IKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLP EEVPP
Sbjct: 8   RTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPAEEVPP 67

Query: 70  ELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 121
           ELPEPALGINFARDGM EKDWLSLVAVHSD+WLLAVAFYFGARFGF K  R
Sbjct: 68  ELPEPALGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESR 118

[Close]

BLAST of Cla004563 vs. TrEMBL
Match: A0A0A0L6S9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G113340 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 2.7e-65
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60
           MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV
Sbjct: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60

Query: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120
           NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER
Sbjct: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120

[Close]

BLAST of Cla004563 vs. TrEMBL
Match: A0A0D2UNM4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G168100 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 9.6e-63
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1


Query: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60
           MEG+PHPIPRTVEEV+ DFKGRRAGLIKALTTDV+KFYQQCDPEKENLCLYGLPNETWEV
Sbjct: 1   MEGIPHPIPRTVEEVFNDFKGRRAGLIKALTTDVDKFYQQCDPEKENLCLYGLPNETWEV 60

Query: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120
           NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGK ER
Sbjct: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNER 120

[Close]

BLAST of Cla004563 vs. TrEMBL
Match: A0A0D2TLA9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G168100 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 9.6e-63
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1


Query: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60
           MEG+PHPIPRTVEEV+ DFKGRRAGLIKALTTDV+KFYQQCDPEKENLCLYGLPNETWEV
Sbjct: 1   MEGIPHPIPRTVEEVFNDFKGRRAGLIKALTTDVDKFYQQCDPEKENLCLYGLPNETWEV 60

Query: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120
           NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGK ER
Sbjct: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNER 120

[Close]

BLAST of Cla004563 vs. TrEMBL
Match: A0A0B0PSJ0_GOSAR (PHD finger Alfin1 OS=Gossypium arboreum GN=F383_03915 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 9.6e-63
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1


Query: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60
           MEG+PHPIPRTVEEV+ DFKGRRAGLIKALTTDV+KFYQQCDPEKENLCLYGLPNETWEV
Sbjct: 1   MEGIPHPIPRTVEEVFNDFKGRRAGLIKALTTDVDKFYQQCDPEKENLCLYGLPNETWEV 60

Query: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120
           NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGK ER
Sbjct: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNER 120

[Close]

BLAST of Cla004563 vs. TrEMBL
Match: A0A0D2VAI6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G143400 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.1e-62
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1


Query: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60
           MEG+PHPIPRTVEEV+ DFKGRR+GLIKALTTDV+KFYQQCDPEKENLCLYGLPNETWEV
Sbjct: 1   MEGIPHPIPRTVEEVFNDFKGRRSGLIKALTTDVDKFYQQCDPEKENLCLYGLPNETWEV 60

Query: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120
           NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGK ER
Sbjct: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNER 120

[Close]

BLAST of Cla004563 vs. NCBI nr
Match: gi|449431906|ref|XP_004133741.1| (PREDICTED: PHD finger protein ALFIN-LIKE 7 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 3.9e-65
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60
           MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV
Sbjct: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60

Query: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120
           NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER
Sbjct: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120

[Close]

BLAST of Cla004563 vs. NCBI nr
Match: gi|659102546|ref|XP_008452190.1| (PREDICTED: PHD finger protein ALFIN-LIKE 7 [Cucumis melo])

HSP 1 Score: 255.8 bits (652), Expect = 3.9e-65
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60
           MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV
Sbjct: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60

Query: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120
           NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER
Sbjct: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120

[Close]

BLAST of Cla004563 vs. NCBI nr
Match: gi|823225085|ref|XP_012445333.1| (PREDICTED: PHD finger protein ALFIN-LIKE 7-like [Gossypium raimondii])

HSP 1 Score: 247.3 bits (630), Expect = 1.4e-62
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1


Query: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60
           MEG+PHPIPRTVEEV+ DFKGRRAGLIKALTTDV+KFYQQCDPEKENLCLYGLPNETWEV
Sbjct: 1   MEGIPHPIPRTVEEVFNDFKGRRAGLIKALTTDVDKFYQQCDPEKENLCLYGLPNETWEV 60

Query: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120
           NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGK ER
Sbjct: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNER 120

[Close]

BLAST of Cla004563 vs. NCBI nr
Match: gi|728833315|gb|KHG12758.1| (PHD finger Alfin1 [Gossypium arboreum])

HSP 1 Score: 247.3 bits (630), Expect = 1.4e-62
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1


Query: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60
           MEG+PHPIPRTVEEV+ DFKGRRAGLIKALTTDV+KFYQQCDPEKENLCLYGLPNETWEV
Sbjct: 1   MEGIPHPIPRTVEEVFNDFKGRRAGLIKALTTDVDKFYQQCDPEKENLCLYGLPNETWEV 60

Query: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120
           NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGK ER
Sbjct: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNER 120

[Close]

BLAST of Cla004563 vs. NCBI nr
Match: gi|947102777|gb|KRH51269.1| (hypothetical protein GLYMA_07G271400 [Glycine max])

HSP 1 Score: 246.1 bits (627), Expect = 3.1e-62
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 1


Query: 1   MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 60
           MEG+PHPIPRTVEEV+ DFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYG PNETWEV
Sbjct: 1   MEGVPHPIPRTVEEVFTDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGFPNETWEV 60

Query: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTER 120
           NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGK ER
Sbjct: 61  NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNER 120

The following BLAST results are available for this feature:

BLAST of Cla004563 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ALFL7_ARATH	1.2e-61	90.00	PHD finger protein ALFIN-LIKE 7 OS=Arabidopsis thaliana GN=AL7 PE=1 SV=1	[more]
ALFL6_ARATH	9.8e-61	90.00	PHD finger protein ALFIN-LIKE 6 OS=Arabidopsis thaliana GN=AL6 PE=2 SV=1	[more]
ALFIN_MEDSA	4.9e-60	90.91	PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1	[more]
ALFL8_ORYSJ	6.8e-54	88.29	PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. japonica GN=Os11g0244800 ...	[more]
ALFL8_ORYSI	6.8e-54	88.29	PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. indica GN=OsI_35671 PE=3 ...	[more]

BLAST of Cla004563 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6S9_CUCSA	2.7e-65	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G113340 PE=4 SV=1	[more]
A0A0D2UNM4_GOSRA	9.6e-63	95.83	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G168100 PE=4 SV=1	[more]
A0A0D2TLA9_GOSRA	9.6e-63	95.83	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G168100 PE=4 SV=1	[more]
A0A0B0PSJ0_GOSAR	9.6e-63	95.83	PHD finger Alfin1 OS=Gossypium arboreum GN=F383_03915 PE=4 SV=1	[more]
A0A0D2VAI6_GOSRA	2.1e-62	95.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G143400 PE=4 SV=1	[more]

BLAST of Cla004563 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431906\|ref\|XP_004133741.1\|	3.9e-65	100.00	PREDICTED: PHD finger protein ALFIN-LIKE 7 [Cucumis sativus]	[more]
gi\|659102546\|ref\|XP_008452190.1\|	3.9e-65	100.00	PREDICTED: PHD finger protein ALFIN-LIKE 7 [Cucumis melo]	[more]
gi\|823225085\|ref\|XP_012445333.1\|	1.4e-62	95.83	PREDICTED: PHD finger protein ALFIN-LIKE 7-like [Gossypium raimondii]	[more]
gi\|728833315\|gb\|KHG12758.1\|	1.4e-62	95.83	PHD finger Alfin1 [Gossypium arboreum]	[more]
gi\|947102777\|gb\|KRH51269.1\|	3.1e-62	95.83	hypothetical protein GLYMA_07G271400 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021998	Alfin

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0042393	histone binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0042393	histone binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU12134	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004563	Cla004563.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU12134	WMU12134	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021998	Alfin	PFAM	PF12165	DUF3594	coord: 11..117 score: 4.2
None	No IPR available	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 1..120 score: 9.6E
None	No IPR available	PANTHER	PTHR12321:SF60	PHD FINGER PROTEIN ALFIN-LIKE 6-RELATED	coord: 1..120 score: 9.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004563	Cp4.1LG14g00710	Cucurbita pepo (Zucchini)	cpewmB213

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004563	Cucurbita pepo (Zucchini)	cpewmB387
Cla004563	Bottle gourd (USVL1VR-Ls)	lsiwmB349
Cla004563	Bottle gourd (USVL1VR-Ls)	lsiwmB352
Cla004563	Cucumber (Gy14) v2	cgybwmB185
Cla004563	Melon (DHL92) v3.6.1	medwmB436
Cla004563	Melon (DHL92) v3.6.1	medwmB442
Cla004563	Silver-seed gourd	carwmB0011
Cla004563	Silver-seed gourd	carwmB1017
Cla004563	Cucumber (Chinese Long) v3	cucwmB206
Cla004563	Watermelon (97103) v2	wmwmbB054
Cla004563	Wax gourd	wgowmB017
Cla004563	Wax gourd	wgowmB030
Cla004563	Cucumber (Gy14) v1	cgywmB473
Cla004563	Cucumber (Gy14) v1	cgywmB474
Cla004563	Cucurbita maxima (Rimu)	cmawmB302
Cla004563	Cucurbita maxima (Rimu)	cmawmB660
Cla004563	Cucurbita moschata (Rifu)	cmowmB296
Cla004563	Cucurbita moschata (Rifu)	cmowmB655
Cla004563	Wild cucumber (PI 183967)	cpiwmB196
Cla004563	Wild cucumber (PI 183967)	cpiwmB206
Cla004563	Melon (DHL92) v3.5.1	mewmB450
Cla004563	Melon (DHL92) v3.5.1	mewmB451
Cla004563	Melon (DHL92) v3.5.1	mewmB454
Cla004563	Watermelon (Charleston Gray)	wcgwmB054
Cla004563	Cucumber (Chinese Long) v2	cuwmB196
Cla004563	Cucumber (Chinese Long) v2	cuwmB206