Cla004558 (gene) Watermelon (97103) v1

Overview
NameCla004558
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr10 : 10227371 .. 10227952 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGATGCAGTCTGGCTCATGGCCAAGCCAGGTTCCAAATGGGATACTTCACCCATAGGCATCAAGATGTTGCCTTTGAAATGCCTCATGCCTGAGACTAACCTGTGGGTGTATTTCATTAAAAAGCAGCTCATTCCCACCACGCACGACACAACTATCTCAAGAGATCGCATCATGGCAACCTACTACTTTATGCATCGCATCCCCCTGGATGTGGGTCGCATAATTGCCGCACAGATCATAAGTGTTTTCAGCAAACCTTGGGGTCAGTTTTTCTTTCCTTCACTGATCATGGGTTTGTGTGCTAATGCTGCCCTCCAGAGCGACACATTTTCAGTGGACAATGAGCCAGGCGTCTTGATAAATGGGGTAGTAAATAACAAAACACTGCGGCGGTTGATGAAGGGATCCCCGCACCAACCTGGCCTTGCAAAGGCACCCAAAGGAGCCCCTAAGCCCCCCACTTCCCTTTTACCCCCACCTCTTAGGCCAAAGAAAAAGAAAAGTGTGGTCGTGGAACATGTGACAAGTCCTGAATGCTACGTCGATGACTTCAACGCAACCCTCCCCTCACCTTAG

mRNA sequence

ATGCAAGATGCAGTCTGGCTCATGGCCAAGCCAGGTTCCAAATGGGATACTTCACCCATAGGCATCAAGATGTTGCCTTTGAAATGCCTCATGCCTGAGACTAACCTGTGGGTGTATTTCATTAAAAAGCAGCTCATTCCCACCACGCACGACACAACTATCTCAAGAGATCGCATCATGGCAACCTACTACTTTATGCATCGCATCCCCCTGGATGTGGGTCGCATAATTGCCGCACAGATCATAAGTGTTTTCAGCAAACCTTGGGGTCAGTTTTTCTTTCCTTCACTGATCATGGGTTTGTGTGCTAATGCTGCCCTCCAGAGCGACACATTTTCAGTGGACAATGAGCCAGGCGTCTTGATAAATGGGGTAGTAAATAACAAAACACTGCGGCGGTTGATGAAGGGATCCCCGCACCAACCTGGCCTTGCAAAGGCACCCAAAGGAGCCCCTAAGCCCCCCACTTCCCTTTTACCCCCACCTCTTAGGCCAAAGAAAAAGAAAAGTGTGGTCGTGGAACATGTGACAAGTCCTGAATGCTACGTCGATGACTTCAACGCAACCCTCCCCTCACCTTAG

Coding sequence (CDS)

ATGCAAGATGCAGTCTGGCTCATGGCCAAGCCAGGTTCCAAATGGGATACTTCACCCATAGGCATCAAGATGTTGCCTTTGAAATGCCTCATGCCTGAGACTAACCTGTGGGTGTATTTCATTAAAAAGCAGCTCATTCCCACCACGCACGACACAACTATCTCAAGAGATCGCATCATGGCAACCTACTACTTTATGCATCGCATCCCCCTGGATGTGGGTCGCATAATTGCCGCACAGATCATAAGTGTTTTCAGCAAACCTTGGGGTCAGTTTTTCTTTCCTTCACTGATCATGGGTTTGTGTGCTAATGCTGCCCTCCAGAGCGACACATTTTCAGTGGACAATGAGCCAGGCGTCTTGATAAATGGGGTAGTAAATAACAAAACACTGCGGCGGTTGATGAAGGGATCCCCGCACCAACCTGGCCTTGCAAAGGCACCCAAAGGAGCCCCTAAGCCCCCCACTTCCCTTTTACCCCCACCTCTTAGGCCAAAGAAAAAGAAAAGTGTGGTCGTGGAACATGTGACAAGTCCTGAATGCTACGTCGATGACTTCAACGCAACCCTCCCCTCACCTTAG

Protein sequence

MQDAVWLMAKPGSKWDTSPIGIKMLPLKCLMPETNLWVYFIKKQLIPTTHDTTISRDRIMATYYFMHRIPLDVGRIIAAQIISVFSKPWGQFFFPSLIMGLCANAALQSDTFSVDNEPGVLINGVVNNKTLRRLMKGSPHQPGLAKAPKGAPKPPTSLLPPPLRPKKKKSVVVEHVTSPECYVDDFNATLPSP
Homology
[Close]
BLAST of Cla004558 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 41/137 (29.93%), Postives = 69/137 (50.36%), Query Frame = 1 

Query: 1   MQDAVWLMAKPGSKWDTSPIGIKMLPLKCLMPETNLWVYFIKKQLIPTTHDTTISRDRIM 60
           +++ +  +A  G++W  S  G        L P   +W +F+  +L+ +TH  TISR+R +
Sbjct: 157 LKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

Query: 61  ATYYFMHRIPLDVGRIIAAQIISVFSKPWGQFFFPSLIMGLCANAALQSDTFSVDNEPGV 120
             Y  +   P++VGR+I  QI +   K  G  +FPSLI  LC    +QS      +EP +
Sbjct: 217 LLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELC----IQSHVAWEASEPRL 276

Query: 121 LINGVVNNKTLRRLMKG 138
              G ++   + R+  G
Sbjct: 277 RNTGAMDLVAITRISSG 289

[Close]
BLAST of Cla004558 vs. TrEMBL
Match: A0A0A0LAY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G511970 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 13  SKWDTSPIGIKMLPLKCLM---PETN--LWVYFIKKQLIPTTHDTTISRDRIMATYYFMH 72
           +KWD   IG   + +  +    P T+  +W+ F+KK+++ T  D+TIS D+IM  Y  M 
Sbjct: 68  TKWDKMSIGTYQIRMGLIFLHNPNTDASVWLVFVKKKIMSTRPDSTISMDKIMLIYCIME 127

Query: 73  RIPLDVGRIIAAQIISVFSKPWGQFFFPSLIMGLCANAAL 108
            IP++VG II   I++    P     F  LI  LC  A L
Sbjct: 128 EIPVNVGEIICKHILAWIKHPHDGRPFLHLIEKLCLKACL 167

[Close]
BLAST of Cla004558 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-06
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 1 

Query: 36  LWVYFIKKQLIPTTHDTTISRDRIMATYYFMHRIPLDVGRIIAAQIISVFSKPWGQFFFP 95
           +W+  IKK+++PT H +TIS +R+M  Y  M +I +++G+II+  II++   P G   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 96  SLIMGLCANAAL 108
            LI  LC  A L
Sbjct: 88  YLIEQLCLRACL 99

[Close]
BLAST of Cla004558 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 41/137 (29.93%), Postives = 69/137 (50.36%), Query Frame = 1 

Query: 1   MQDAVWLMAKPGSKWDTSPIGIKMLPLKCLMPETNLWVYFIKKQLIPTTHDTTISRDRIM 60
           +++ +  +A  G++W  S  G        L P   +W +F+  +L+ +TH  TISR+R +
Sbjct: 157 LKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

Query: 61  ATYYFMHRIPLDVGRIIAAQIISVFSKPWGQFFFPSLIMGLCANAALQSDTFSVDNEPGV 120
             Y  +   P++VGR+I  QI +   K  G  +FPSLI  LC    +QS      +EP +
Sbjct: 217 LLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELC----IQSHVAWEASEPRL 276

Query: 121 LINGVVNNKTLRRLMKG 138
              G ++   + R+  G
Sbjct: 277 RNTGAMDLVAITRISSG 289

[Close]
BLAST of Cla004558 vs. NCBI nr
Match: gi|700202971|gb|KGN58104.1| (hypothetical protein Csa_3G511970 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 13  SKWDTSPIGIKMLPLKCLM---PETN--LWVYFIKKQLIPTTHDTTISRDRIMATYYFMH 72
           +KWD   IG   + +  +    P T+  +W+ F+KK+++ T  D+TIS D+IM  Y  M 
Sbjct: 68  TKWDKMSIGTYQIRMGLIFLHNPNTDASVWLVFVKKKIMSTRPDSTISMDKIMLIYCIME 127

Query: 73  RIPLDVGRIIAAQIISVFSKPWGQFFFPSLIMGLCANAAL 108
            IP++VG II   I++    P     F  LI  LC  A L
Sbjct: 128 EIPVNVGEIICKHILAWIKHPHDGRPFLHLIEKLCLKACL 167

[Close]
BLAST of Cla004558 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 6.5e-06
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 1 

Query: 36  LWVYFIKKQLIPTTHDTTISRDRIMATYYFMHRIPLDVGRIIAAQIISVFSKPWGQFFFP 95
           +W+  IKK+++PT H +TIS +R+M  Y  M +I +++G+II+  II++   P G   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 96  SLIMGLCANAAL 108
            LI  LC  A L
Sbjct: 88  YLIEQLCLRACL 99

The following BLAST results are available for this feature:
BLAST of Cla004558 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RBS1_9ROSA1.8e-0729.93Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1[more]
A0A0A0LAY9_CUCSA1.2e-0636.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G511970 PE=4 SV=1[more]
A0A0A0LAN0_CUCSA4.5e-0640.28Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1[more]
BLAST of Cla004558 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703082781|ref|XP_010092041.1|2.6e-0729.93hypothetical protein L484_000844 [Morus notabilis][more]
gi|700202971|gb|KGN58104.1|1.7e-0636.00hypothetical protein Csa_3G511970 [Cucumis sativus][more]
gi|700202594|gb|KGN57727.1|6.5e-0640.28hypothetical protein Csa_3G263250 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004558Cla004558.1mRNA