Cla004548 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004548
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Gag/pol protein (Fragment) (AHRD V1 ***- E2GK51_BRYDI)
Location	Chr10 : 10411824 .. 10412147 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGTTCATTTATTCAACTACTCGCTTCCGATAAACTTAACAGAGATAACTATGGTAAATGGAAATCAAACCCTAATACAATACTGGTTATGGATGATCTACGGTTCGTTTTAATGGACGGATGTCCTCCAGTTCCCGACTCAACTGCAAATCGAAATGTTCAGGATGCGTATGACAGATGGATTAGGGCTAACGATAAAGCCCGAGTCTACATCTTGGTAAGCATATCAGATGTGTTGTCCAAGAAGCATGAGAACATGGTGACCGCTAGGGAAATCATGGACTCGCTGCAGACAATGTTTGGACAACCATCCTCATAG

mRNA sequence

ATGGCTAGTTCATTTATTCAACTACTCGCTTCCGATAAACTTAACAGAGATAACTATGGTAAATGGAAATCAAACCCTAATACAATACTGGTTATGGATGATCTACGGTTCGTTTTAATGGACGGATGTCCTCCAGTTCCCGACTCAACTGCAAATCGAAATGTTCAGGATGCGTATGACAGATGGATTAGGGCTAACGATAAAGCCCGAGTCTACATCTTGGTAAGCATATCAGATGTGTTGTCCAAGAAGCATGAGAACATGGTGACCGCTAGGGAAATCATGGACTCGCTGCAGACAATGTTTGGACAACCATCCTCATAG

Coding sequence (CDS)

ATGGCTAGTTCATTTATTCAACTACTCGCTTCCGATAAACTTAACAGAGATAACTATGGTAAATGGAAATCAAACCCTAATACAATACTGGTTATGGATGATCTACGGTTCGTTTTAATGGACGGATGTCCTCCAGTTCCCGACTCAACTGCAAATCGAAATGTTCAGGATGCGTATGACAGATGGATTAGGGCTAACGATAAAGCCCGAGTCTACATCTTGGTAAGCATATCAGATGTGTTGTCCAAGAAGCATGAGAACATGGTGACCGCTAGGGAAATCATGGACTCGCTGCAGACAATGTTTGGACAACCATCCTCATAG

Protein sequence

MASSFIQLLASDKLNRDNYGKWKSNPNTILVMDDLRFVLMDGCPPVPDSTANRNVQDAYDRWIRANDKARVYILVSISDVLSKKHENMVTAREIMDSLQTMFGQPSS

Homology

[Close]

BLAST of Cla004548 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.4e-34
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 1


Query: 1   MASSFIQLLASDKLNRDNYGKWKSNPNTILVMDDLRFVLMDGCPPVPDSTANRNVQDAYD 60
           M +S +QLLAS+KLN DNY  WKSN NTILV+DDLRFVL + CP  P   ANR V++AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWIRANDKARVYILVSISDVLSKKHENMVTAREIMDSLQTMFGQPS 107
           RW++ANDKARVYIL S++DVL+KKH+++ TA+ IMDSL+ MFGQPS
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPS 106

[Close]

BLAST of Cla004548 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.7e-29
Identity = 64/106 (60.38%), Postives = 83/106 (78.30%), Query Frame = 1


Query: 1   MASSFIQLLASDKLNRDNYGKWKSNPNTILVMDDLRFVLMDGCPPVPDSTANRNVQDAYD 60
           M +S +QLLAS+KLN DNY  WKSN NTILV++DLRF+L + C   P   ANR V++AYD
Sbjct: 1   MNTSIVQLLASEKLNSDNYSAWKSNLNTILVVEDLRFILTEECHQAPALNANRTVREAYD 60

Query: 61  RWIRANDKARVYILVSISDVLSKKHENMVTAREIMDSLQTMFGQPS 107
           RW +ANDKA VYIL S++DVL+KK++++ T + IMDS + MFGQPS
Sbjct: 61  RWGKANDKACVYILASMTDVLAKKYDSIATTKGIMDSFREMFGQPS 106

[Close]

BLAST of Cla004548 vs. TrEMBL
Match: W9SH28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.8e-27
Identity = 58/106 (54.72%), Postives = 80/106 (75.47%), Query Frame = 1


Query: 1   MASSFIQLLASDKLNRDNYGKWKSNPNTILVMDDLRFVLMDGCPPVPDSTANRNVQDAYD 60
           M++  I LL ++KL+ DNY KWKSN N +L+ +D +FVL+D CPP P + A +  ++ YD
Sbjct: 1   MSNLIIILLVTEKLDGDNYAKWKSNMNILLICEDYKFVLVDECPPEPAANATKTAREPYD 60

Query: 61  RWIRANDKARVYILVSISDVLSKKHENMVTAREIMDSLQTMFGQPS 107
           RWI+AN+KA+ ++L S+SDVL KKHE M TA EIM+SL+ MFG PS
Sbjct: 61  RWIKANNKAKCFMLASMSDVLCKKHEEMETAYEIMESLEAMFGAPS 106

[Close]

BLAST of Cla004548 vs. TrEMBL
Match: W9RVT2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.4e-25
Identity = 56/106 (52.83%), Postives = 79/106 (74.53%), Query Frame = 1


Query: 1   MASSFIQLLASDKLNRDNYGKWKSNPNTILVMDDLRFVLMDGCPPVPDSTANRNVQDAYD 60
           M++  I LLA++K + DNY KWKSN N +LV +D +FVL++ CP  P   A++  ++ YD
Sbjct: 1   MSNPIITLLATEKPDGDNYAKWKSNMNILLVCEDYKFVLVEECPQEPAVNASKTAREPYD 60

Query: 61  RWIRANDKARVYILVSISDVLSKKHENMVTAREIMDSLQTMFGQPS 107
           RWI+AN+KA+ ++L S+SDVL KKHE M TA EIM+SL+ +FG PS
Sbjct: 61  RWIKANNKAKCFMLASMSDVLHKKHEEMETAYEIMESLEAIFGAPS 106

[Close]

BLAST of Cla004548 vs. TrEMBL
Match: W9RXH5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-24
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 1


Query: 1   MASSFIQLLASDKLNRDNYGKWKSNPNTILVMDDLRFVLMDGCPPVPDSTANRNVQDAYD 60
           M +  I LLA++KL+ DNY KWKSN N +LV +D +F+L + CP  P   A++  ++ YD
Sbjct: 1   MPNPIITLLATEKLDGDNYAKWKSNMNILLVCEDYKFLLAEECPLEPADNASKTAREPYD 60

Query: 61  RWIRANDKARVYILVSISDVLSKKHENMVTAREIMDSLQTMFGQPS 107
           RWI+AN+KA+ ++L S+SDVL KKH  M TA EIM+SL+ MFG PS
Sbjct: 61  RWIKANNKAKCFMLASMSDVLRKKHGEMETAYEIMESLEAMFGAPS 106

[Close]

BLAST of Cla004548 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 4.1e-34
Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = 1


Query: 1   MASSFIQLLASDKLNRDNYGKWKSNPNTILVMDDLRFVLMDGCPPVPDSTANRNVQDAYD 60
           M SS +QLLAS+K+N DNY  WKSN NTILV+DDLRFVL + CP  P S ANR  ++AYD
Sbjct: 1   MNSSIVQLLASEKINDDNYAAWKSNLNTILVVDDLRFVLTEECPQNPASNANRTGREAYD 60

Query: 61  RWIRANDKARVYILVSISDVLSKKHENMVTAREIMDSLQTMFGQP 106
           RWI+AN+KARVYIL S+SDVL+KKHE++ TA+EIMDSL+ MFGQP
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLRGMFGQP 105

[Close]

BLAST of Cla004548 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 151.4 bits (381), Expect = 9.1e-34
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 1


Query: 1   MASSFIQLLASDKLNRDNYGKWKSNPNTILVMDDLRFVLMDGCPPVPDSTANRNVQDAYD 60
           M +S +QLLAS+KLN DNY  WKSN NTILV+DDLRFVL + CP  P   ANR V++AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWIRANDKARVYILVSISDVLSKKHENMVTAREIMDSLQTMFGQPS 107
           RW++ANDKARVYIL S++DVL+KKH+++ TA+ IMDSL+ MFGQPS
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPS 106

[Close]

BLAST of Cla004548 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 2.3e-32
Identity = 70/105 (66.67%), Postives = 86/105 (81.90%), Query Frame = 1


Query: 1   MASSFIQLLASDKLNRDNYGKWKSNPNTILVMDDLRFVLMDGCPPVPDSTANRNVQDAYD 60
           M SS +QLLA +KLN DNY  WKSN NTILV+DDLRFVL + CP  P S A++  + AYD
Sbjct: 1   MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPQTPSSNASQTSRKAYD 60

Query: 61  RWIRANDKARVYILVSISDVLSKKHENMVTAREIMDSLQTMFGQP 106
           RWI+AN+KARVYIL S+SDVL+KKHE++ TA+EIM+SL+ MFGQP
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQP 105

[Close]

BLAST of Cla004548 vs. NCBI nr
Match: gi|299474489|gb|ADJ18450.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 135.2 bits (339), Expect = 6.8e-29
Identity = 64/106 (60.38%), Postives = 83/106 (78.30%), Query Frame = 1


Query: 1   MASSFIQLLASDKLNRDNYGKWKSNPNTILVMDDLRFVLMDGCPPVPDSTANRNVQDAYD 60
           M +S +QLLAS+KLN DNY  WKSN NTILV++DLRF+L + C   P   ANR V++AYD
Sbjct: 1   MNTSIVQLLASEKLNSDNYSAWKSNLNTILVVEDLRFILTEECHQAPALNANRTVREAYD 60

Query: 61  RWIRANDKARVYILVSISDVLSKKHENMVTAREIMDSLQTMFGQPS 107
           RW +ANDKA VYIL S++DVL+KK++++ T + IMDS + MFGQPS
Sbjct: 61  RWGKANDKACVYILASMTDVLAKKYDSIATTKGIMDSFREMFGQPS 106

[Close]

BLAST of Cla004548 vs. NCBI nr
Match: gi|659072276|ref|XP_008464721.1| (PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-28
Identity = 62/104 (59.62%), Postives = 82/104 (78.85%), Query Frame = 1


Query: 3   SSFIQLLASDKLNRDNYGKWKSNPNTILVMDDLRFVLMDGCPPVPDSTANRNVQDAYDRW 62
           S+ + +LA DKLN +NY  WK+  NT+L++DDL FVL++ CP VP + A R V++AY+RW
Sbjct: 2   SATLNMLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERW 61

Query: 63  IRANDKARVYILVSISDVLSKKHENMVTAREIMDSLQTMFGQPS 107
            +AN+KAR YIL S+S VL+KKHE+M+T REIMDSLQ MFGQ S
Sbjct: 62  AKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQAS 105

The following BLAST results are available for this feature:

BLAST of Cla004548 vs. TrEMBL


Match Name	E-value	Identity	Description
E2GK51_BRYDI	6.4e-34	66.98	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]
E2GK52_BRYDI	4.7e-29	60.38	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]
W9SH28_9ROSA	5.8e-27	54.72	Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1	[more]
W9RVT2_9ROSA	5.4e-25	52.83	Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1	[more]
W9RXH5_9ROSA	1.2e-24	52.83	Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1	[more]

BLAST of Cla004548 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697615\|ref\|XP_011654359.1\|	4.1e-34	69.52	PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus]	[more]
gi\|299474487\|gb\|ADJ18449.1\|	9.1e-34	66.98	gag/pol protein [Bryonia dioica]	[more]
gi\|659086056\|ref\|XP_008443743.1\|	2.3e-32	66.67	PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo]	[more]
gi\|299474489\|gb\|ADJ18450.1\|	6.8e-29	60.38	gag/pol protein [Bryonia dioica]	[more]
gi\|659072276\|ref\|XP_008464721.1\|	1.2e-28	59.62	PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004548	Cla004548.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004548	Melon (DHL92) v3.6.1	medwmB436
Cla004548	Silver-seed gourd	carwmB0011
Cla004548	Silver-seed gourd	carwmB1017
Cla004548	Cucumber (Chinese Long) v3	cucwmB206
Cla004548	Watermelon (97103) v2	wmwmbB054
Cla004548	Wax gourd	wgowmB030
Cla004548	Cucumber (Gy14) v1	cgywmB474
Cla004548	Cucurbita maxima (Rimu)	cmawmB302
Cla004548	Cucurbita maxima (Rimu)	cmawmB660
Cla004548	Cucurbita moschata (Rifu)	cmowmB296
Cla004548	Cucurbita moschata (Rifu)	cmowmB655
Cla004548	Wild cucumber (PI 183967)	cpiwmB196
Cla004548	Melon (DHL92) v3.5.1	mewmB454
Cla004548	Watermelon (Charleston Gray)	wcgwmB054
Cla004548	Cucumber (Chinese Long) v2	cuwmB196
Cla004548	Cucurbita pepo (Zucchini)	cpewmB213
Cla004548	Cucurbita pepo (Zucchini)	cpewmB387
Cla004548	Bottle gourd (USVL1VR-Ls)	lsiwmB349
Cla004548	Cucumber (Gy14) v2	cgybwmB185